List of Faculty Publications

Below is a list of Faculty publications imported from PubMed or manually added. By default, publications are sorted by year with titles displayed in ascending alphabetical order.
Shortcuts: Wühr, Martin | Wingreen, Ned | Wieschaus, Eric | Troyanskaya, Olga | Tilghman, Shirley | Storey, John | Singh, Mona | Shvartsman, Stanislav | Shaevitz, Joshua | Rabinowitz, Joshua | Murphy, Coleen | Levine, Michael {Levine, Michael S.} | Gregor, Thomas | Botstein, David | Bialek, William | Ayroles, Julien | Andolfatto, Peter | Akey, Joshua

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T. Sørlie, Perou, C. M., Fan, C., Geisler, S., Aas, T., Nobel, A., Anker, G., Akslen, L. A., Botstein, D., Børresen-Dale, A. - L., and Lønning, P. Eystein, Gene expression profiles do not consistently predict the clinical treatment response in locally advanced breast cancer., Mol Cancer Ther, vol. 5, no. 11, pp. 2914-8, 2006.
J. Szabad, Schupbach, T., and Wieschaus, E., Cell lineage and development in the larval epidermis of Drosophila melanogaster., Dev Biol, vol. 73, no. 2, pp. 256-71, 1979.
L. R. Swem, Swem, D. L., Wingreen, N. S., and Bassler, B. L., Deducing receptor signaling parameters from in vivo analysis: LuxN/AI-1 quorum sensing in Vibrio harveyi., Cell, vol. 134, no. 3, pp. 461-73, 2008.
D. Sweeton, Parks, S., Costa, M., and Wieschaus, E., Gastrulation in Drosophila: the formation of the ventral furrow and posterior midgut invaginations., Development, vol. 112, no. 3, pp. 775-89, 1991.
D. Swanson and Wingreen, N. S., Active biopolymers confer fast reorganization kinetics., Phys Rev Lett, vol. 107, no. 21, p. 218103, 2011.
M. Sun, Wartel, M., Cascales, E., Shaevitz, J. W., and Mignot, T., Motor-driven intracellular transport powers bacterial gliding motility., Proc Natl Acad Sci U S A, vol. 108, no. 18, pp. 7559-64, 2011.
X. Su, Wellen, K. E., and Rabinowitz, J. D., Metabolic control of methylation and acetylation., Curr Opin Chem Biol, vol. 30, pp. 52-60, 2016.
X. Su, Lu, W., and Rabinowitz, J. D., Metabolite Spectral Accuracy on Orbitraps., Anal Chem, vol. 89, no. 11, pp. 5940-5948, 2017.
D. Straile, Eckmann, R., Jüngling, T., Thomas, G., and Löffler, H., Influence of climate variability on whitefish (Coregonus lavaretus) year-class strength in a deep, warm monomictic lake., Oecologia, vol. 151, no. 3, pp. 521-9, 2007.
E. A. Stone and Ayroles, J. F., Modulated modularity clustering as an exploratory tool for functional genomic inference., PLoS Genet, vol. 5, no. 5, p. e1000479, 2009.
A. Stolfi, T Gainous, B., Young, J. J., Mori, A., Levine, M., and Christiaen, L., Early chordate origins of the vertebrate second heart field., Science, vol. 329, no. 5991, pp. 565-8, 2010.
A. Stolfi and Levine, M., Neuronal subtype specification in the spinal cord of a protovertebrate., Development, vol. 138, no. 5, pp. 995-1004, 2011.
A. Stolfi, Wagner, E., J Taliaferro, M., Chou, S., and Levine, M., Neural tube patterning by Ephrin, FGF and Notch signaling relays., Development, vol. 138, no. 24, pp. 5429-39, 2011.
R. R. Stine, Sakers, A. P., TeSlaa, T., Kissig, M., Stine, Z. E., Kwon, C. Wook, Cheng, L., Lim, H. - W., Kaestner, K. H., Rabinowitz, J. D., and Seale, P., PRDM16 Maintains Homeostasis of the Intestinal Epithelium by Controlling Region-Specific Metabolism., Cell Stem Cell, 2019.
S. Still and Bialek, W., How many clusters? An information-theoretic perspective., Neural Comput, vol. 16, no. 12, pp. 2483-506, 2004.
G. J. Stephens, Johnson-Kerner, B., Bialek, W., and Ryu, W. S., From modes to movement in the behavior of Caenorhabditis elegans., PLoS One, vol. 5, no. 11, p. e13914, 2010.
G. J. Stephens, de Mesquita, M. Bueno, Ryu, W. S., and Bialek, W., Emergence of long timescales and stereotyped behaviors in Caenorhabditis elegans., Proc Natl Acad Sci U S A, vol. 108, no. 18, pp. 7286-9, 2011.
G. J. Stephens, Mora, T., Tkačik, G., and Bialek, W., Statistical thermodynamics of natural images., Phys Rev Lett, vol. 110, no. 1, p. 018701, 2013.
G. J. Stephens and Bialek, W., Statistical mechanics of letters in words., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 81, no. 6 Pt 2, p. 066119, 2010.
G. J. Stephens, Osborne, L. C., and Bialek, W., Searching for simplicity in the analysis of neurons and behavior., Proc Natl Acad Sci U S A, vol. 108 Suppl 3, pp. 15565-71, 2011.
G. J. Stephens, Johnson-Kerner, B., Bialek, W., and Ryu, W. S., Dimensionality and dynamics in the behavior of C. elegans., PLoS Comput Biol, vol. 4, no. 4, p. e1000028, 2008.
G. M. Stein and Murphy, C. T., The Intersection of Aging, Longevity Pathways, and Learning and Memory in C. elegans., Front Genet, vol. 3, p. 259, 2012.
G. M. Stein and Murphy, C. T., C. elegans positive olfactory associative memory is a molecularly conserved behavioral paradigm., Neurobiol Learn Mem, vol. 115, pp. 86-94, 2014.
A. Stathopoulos and Levine, M., Whole-genome expression profiles identify gene batteries in Drosophila., Dev Cell, vol. 3, no. 4, pp. 464-5, 2002.
A. Stathopoulos and Levine, M., Whole-genome analysis of Drosophila gastrulation., Curr Opin Genet Dev, vol. 14, no. 5, pp. 477-84, 2004.
A. Stathopoulos, Van Drenth, M., Erives, A., Markstein, M., and Levine, M., Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo., Cell, vol. 111, no. 5, pp. 687-701, 2002.
A. Stathopoulos and Levine, M., Localized repressors delineate the neurogenic ectoderm in the early Drosophila embryo., Dev Biol, vol. 280, no. 2, pp. 482-93, 2005.
A. Stathopoulos and Levine, M., Dorsal gradient networks in the Drosophila embryo., Dev Biol, vol. 246, no. 1, pp. 57-67, 2002.
A. Stathopoulos and Levine, M., Linear signaling in the Toll-Dorsal pathway of Drosophila: activated Pelle kinase specifies all threshold outputs of gene expression while the bHLH protein Twist specifies a subset., Development, vol. 129, no. 14, pp. 3411-9, 2002.
A. Stathopoulos, Tam, B., Ronshaugen, M., Frasch, M., and Levine, M., pyramus and thisbe: FGF genes that pattern the mesoderm of Drosophila embryos., Genes Dev, vol. 18, no. 6, pp. 687-99, 2004.
M. Stadlmeier, Runtsch, L. Simon, Streshnev, F., Wühr, M., and Carell, T., A Click-chemistry based enrichable cross-linker for structural and protein interaction analysis by mass spectrometry., Chembiochem, 2019.
B. T. Spear and Tilghman, S. M., Role of alpha-fetoprotein regulatory elements in transcriptional activation in transient heterokaryons., Mol Cell Biol, vol. 10, no. 10, pp. 5047-54, 1990.
V. Sourjik and Wingreen, N. S., Turning to the cold., Nat Cell Biol, vol. 9, no. 9, pp. 1029-31, 2007.
V. Sourjik and Wingreen, N. S., Responding to chemical gradients: bacterial chemotaxis., Curr Opin Cell Biol, vol. 24, no. 2, pp. 262-8, 2012.
T. Sorlie, Tibshirani, R., Parker, J., Hastie, T., Marron, J. S., Nobel, A., Deng, S., Johnsen, H., Pesich, R., Geisler, S., Demeter, J., Perou, C. M., Lønning, P. E., Brown, P. O., Børresen-Dale, A. - L., and Botstein, D., Repeated observation of breast tumor subtypes in independent gene expression data sets., Proc Natl Acad Sci U S A, vol. 100, no. 14, pp. 8418-23, 2003.
J. Song and Singh, M., From hub proteins to hub modules: the relationship between essentiality and centrality in the yeast interactome at different scales of organization., PLoS Comput Biol, vol. 9, no. 2, p. e1002910, 2013.
Y. Song, Marmion, R. A., Park, J. O., Biswas, D., Rabinowitz, J. D., and Shvartsman, S. Y., Dynamic Control of dNTP Synthesis in Early Embryos., Dev Cell, vol. 42, no. 3, pp. 301-308.e3, 2017.
Y. Song, Park, J. O., Tanner, L., Nagano, Y., Rabinowitz, J. D., and Shvartsman, S. Y., Energy budget of Drosophila embryogenesis., Curr Biol, vol. 29, no. 12, pp. R566-R567, 2019.
J. Song and Singh, M., How and when should interactome-derived clusters be used to predict functional modules and protein function?, Bioinformatics, vol. 25, no. 23, pp. 3143-50, 2009.
H. G. Son, Seo, M., Ham, S., Hwang, W., Lee, D., An, S. Woo A., Artan, M., Seo, K., Kaletsky, R., Arey, R. N., Ryu, Y., Ha, C. Man, Kim, Y. Ki, Murphy, C. T., Roh, T. - Y., Nam, H. Gil, and Lee, S. - J. V., RNA surveillance via nonsense-mediated mRNA decay is crucial for longevity in daf-2/insulin/IGF-1 mutant C. elegans., Nat Commun, vol. 8, p. 14749, 2017.
A. Marie Sokac and Wieschaus, E., Local actin-dependent endocytosis is zygotically controlled to initiate Drosophila cellularization., Dev Cell, vol. 14, no. 5, pp. 775-86, 2008.
A. Marie Sokac and Wieschaus, E., Zygotically controlled F-actin establishes cortical compartments to stabilize furrows during Drosophila cellularization., J Cell Sci, vol. 121, no. Pt 11, pp. 1815-24, 2008.
K. S. Smith, Chanda, S. K., Lingbeek, M., Ross, D. T., Botstein, D., van Lohuizen, M., and Cleary, M. L., Bmi-1 regulation of INK4A-ARF is a downstream requirement for transformation of hematopoietic progenitors by E2a-Pbx1., Mol Cell, vol. 12, no. 2, pp. 393-400, 2003.
T. Slotte, Hazzouri, K. M., Stern, D., Andolfatto, P., and Wright, S. I., Genetic architecture and adaptive significance of the selfing syndrome in Capsella., Evolution, vol. 66, no. 5, pp. 1360-74, 2012.
T. Slotte, Hazzouri, K. M., J Ågren, A., Koenig, D., Maumus, F., Guo, Y. - L., Steige, K., Platts, A. E., Escobar, J. S., L Newman, K., Wang, W., Mandáková, T., Vello, E., Smith, L. M., Henz, S. R., Steffen, J., Takuno, S., Brandvain, iv, Y., Coop, G., Andolfatto, P., Hu, T. T., Blanchette, M., Clark, R. M., Quesneville, H., Nordborg, M., Gaut, B. S., Lysak, M. A., Jenkins, J., Grimwood, J., Chapman, J., Prochnik, S., Shu, S., Rokhsar, D., Schmutz, J., Weigel, D., and Wright, S. I., The Capsella rubella genome and the genomic consequences of rapid mating system evolution., Nat Genet, vol. 45, no. 7, pp. 831-5, 2013.
N. Slonim, Atwal, G. Singh, Tkačik, G., and Bialek, W., Information-based clustering., Proc Natl Acad Sci U S A, vol. 102, no. 51, pp. 18297-302, 2005.
N. Slavov, Macinskas, J., Caudy, A., and Botstein, D., Metabolic cycling without cell division cycling in respiring yeast., Proc Natl Acad Sci U S A, vol. 108, no. 47, pp. 19090-5, 2011.
N. Slavov and Botstein, D., Decoupling nutrient signaling from growth rate causes aerobic glycolysis and deregulation of cell size and gene expression., Mol Biol Cell, vol. 24, no. 2, pp. 157-68, 2013.
N. Slavov and Botstein, D., Coupling among growth rate response, metabolic cycle, and cell division cycle in yeast., Mol Biol Cell, vol. 22, no. 12, pp. 1997-2009, 2011.
N. Slavov, Airoldi, E. M., van Oudenaarden, A., and Botstein, D., A conserved cell growth cycle can account for the environmental stress responses of divergent eukaryotes., Mol Biol Cell, vol. 23, no. 10, pp. 1986-97, 2012.
M. Skoge, Meir, Y., and Wingreen, N. S., Dynamics of cooperativity in chemical sensing among cell-surface receptors., Phys Rev Lett, vol. 107, no. 17, p. 178101, 2011.
M. L. Skoge, Endres, R. G., and Wingreen, N. S., Receptor-receptor coupling in bacterial chemotaxis: evidence for strongly coupled clusters., Biophys J, vol. 90, no. 12, pp. 4317-26, 2006.
M. Skoge, Naqvi, S., Meir, Y., and Wingreen, N. S., Chemical sensing by nonequilibrium cooperative receptors., Phys Rev Lett, vol. 110, no. 24, p. 248102, 2013.
M. Skoge, Naqvi, S., Meir, Y., and Wingreen, N. S., Chemical Sensing by Nonequilibrium Cooperative Receptors., Phys Rev Lett, vol. 110, no. 24, 2013.
L. Simpson and Wieschaus, E., Zygotic activity of the nullo locus is required to stabilize the actin-myosin network during cellularization in Drosophila., Development, vol. 110, no. 3, pp. 851-63, 1990.
D. S. A. Simakov, Cheung, L. S., Pismen, L. M., and Shvartsman, S. Y., EGFR-dependent network interactions that pattern Drosophila eggshell appendages., Development, vol. 139, no. 15, pp. 2814-20, 2012.
S. J. Silverman, Petti, A. A., Slavov, N., Parsons, L., Briehof, R., Thiberge, S. Y., Zenklusen, D., Gandhi, S. J., Larson, D. R., Singer, R. H., and Botstein, D., Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate., Proc Natl Acad Sci U S A, vol. 107, no. 15, pp. 6946-51, 2010.
R. Shyamsundar, Kim, Y. H., Higgins, J. P., Montgomery, K., Jorden, M., Sethuraman, A., van de Rijn, M., Botstein, D., Brown, P. O., and Pollack, J. R., A DNA microarray survey of gene expression in normal human tissues., Genome Biol, vol. 6, no. 3, p. R22, 2005.
S. Y. Shvartsman, Muratov, C. B., and Lauffenburger, D. A., Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis., Development, vol. 129, no. 11, pp. 2577-89, 2002.
S. Y. Shvartsman and Baker, R. E., Mathematical models of morphogen gradients and their effects on gene expression., Wiley Interdiscip Rev Dev Biol, vol. 1, no. 5, pp. 715-30, 2012.
S. Y. Shvartsman, Coppey, M., and Berezhkovskii, A. M., MAPK signaling in equations and embryos., Fly (Austin), vol. 3, no. 1, pp. 62-7, 2009.
S. Y. Shvartsman, Coppey, M., and Berezhkovskii, A. M., Dynamics of maternal morphogen gradients in Drosophila., Curr Opin Genet Dev, vol. 18, no. 4, pp. 342-7, 2008.
S. Y. Shvartsman, Shooting from the hip: spatial control of signal release by intracellular waves., Proc Natl Acad Sci U S A, vol. 99, no. 14, pp. 9087-9, 2002.
M. K. Shin, Russell, L. B., and Tilghman, S. M., Molecular characterization of four induced alleles at the Ednrb locus., Proc Natl Acad Sci U S A, vol. 94, no. 24, pp. 13105-10, 1997.
M. K. Shin, Levorse, J. M., Ingram, R. S., and Tilghman, S. M., The temporal requirement for endothelin receptor-B signalling during neural crest development., Nature, vol. 402, no. 6761, pp. 496-501, 1999.
W. Shi, Peyrot, S. M., Munro, E., and Levine, M., FGF3 in the floor plate directs notochord convergent extension in the Ciona tadpole., Development, vol. 136, no. 1, pp. 23-8, 2009.
W. Shi, Levine, M., and Davidson, B., Unraveling genomic regulatory networks in the simple chordate, Ciona intestinalis., Genome Res, vol. 15, no. 12, pp. 1668-74, 2005.
C. Shi and Murphy, C. T., Feeding the germline., Genes Dev, vol. 30, no. 3, pp. 249-50, 2016.
C. Shi and Murphy, C. T., Mating induces shrinking and death in Caenorhabditis mothers., Science, vol. 343, no. 6170, pp. 536-40, 2014.
C. Shi, Runnels, A. M., and Murphy, C. T., Mating and male pheromone kill Caenorhabditis males through distinct mechanisms., Elife, vol. 6, 2017.
W. M. Shaw, Luo, S., Landis, J., Ashraf, J., and Murphy, C. T., The C. elegans TGF-beta Dauer pathway regulates longevity via insulin signaling., Curr Biol, vol. 17, no. 19, pp. 1635-45, 2007.
T. Sharpee, Rust, N. C., and Bialek, W., Analyzing neural responses to natural signals: maximally informative dimensions., Neural Comput, vol. 16, no. 2, pp. 223-50, 2004.
T. Sharpee and Bialek, W., Neural decision boundaries for maximal information transmission., PLoS One, vol. 2, no. 7, p. e646, 2007.
M. Shapira, Segal, E., and Botstein, D., Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress., Mol Biol Cell, vol. 15, no. 12, pp. 5659-69, 2004.
M. Shakoury-Elizeh, Tiedeman, J., Rashford, J., Ferea, T., Demeter, J., Garcia, E., Rolfes, R., Brown, P. O., Botstein, D., and Philpott, C. C., Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae., Mol Biol Cell, vol. 15, no. 3, pp. 1233-43, 2004.
J. W. Shaevitz, Abbondanzieri, E. A., Landick, R., and Block, S. M., Backtracking by single RNA polymerase molecules observed at near-base-pair resolution., Nature, vol. 426, no. 6967, pp. 684-7, 2003.
J. W. Shaevitz and Fletcher, D. A., Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function., J Opt Soc Am A Opt Image Sci Vis, vol. 24, no. 9, pp. 2622-7, 2007.
J. W. Shaevitz, Super-resolution for a 3D world., Nat Methods, vol. 5, no. 6, pp. 471-2, 2008.
J. W. Shaevitz and Gitai, Z., The structure and function of bacterial actin homologs., Cold Spring Harb Perspect Biol, vol. 2, no. 9, p. a000364, 2010.
J. W. Shaevitz and Fletcher, D. A., Load fluctuations drive actin network growth., Proc Natl Acad Sci U S A, vol. 104, no. 40, pp. 15688-92, 2007.
J. W. Shaevitz, Block, S. M., and Schnitzer, M. J., Statistical kinetics of macromolecular dynamics., Biophys J, vol. 89, no. 4, pp. 2277-85, 2005.
J. W. Shaevitz, Lee, J. Y., and Fletcher, D. A., Spiroplasma swim by a processive change in body helicity., Cell, vol. 122, no. 6, pp. 941-5, 2005.
J. W. Shaevitz and Fletcher, D. A., Curvature and torsion in growing actin networks., Phys Biol, vol. 5, no. 2, p. 026006, 2008.
J. W. Shaevitz, Combining modeling and experiment to understand bacterial growth., Biophys J, vol. 104, no. 12, p. 2573, 2013.
K. Senger, Armstrong, G. W., Rowell, W. J., Kwan, J. M., Markstein, M., and Levine, M., Immunity regulatory DNAs share common organizational features in Drosophila., Mol Cell, vol. 13, no. 1, pp. 19-32, 2004.
E. Semenova, Wang, X. F., Jablonski, M. M., Levorse, J., and Tilghman, S. M., An engineered 800 kilobase deletion of Uchl3 and Lmo7 on mouse chromosome 14 causes defects in viability, postnatal growth and degeneration of muscle and retina., Hum Mol Genet, vol. 12, no. 11, pp. 1301-12, 2003.
G. Sella, Petrov, D. A., Przeworski, M., and Andolfatto, P., Pervasive natural selection in the Drosophila genome?, PLoS Genet, vol. 5, no. 6, p. e1000495, 2009.
E. Segal, Shapira, M., Regev, iv, A., Pe'er, D., Botstein, D., Koller, D., and Friedman, N., Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data., Nat Genet, vol. 34, no. 2, pp. 166-76, 2003.
R. S. G. Sealfon, Hibbs, M. A., Huttenhower, C., Myers, C. L., and Troyanskaya, O. G., GOLEM: an interactive graph-based gene-ontology navigation and analysis tool., BMC Bioinformatics, vol. 7, p. 443, 2006.
T. Schupbach and Wieschaus, E., Female sterile mutations on the second chromosome of Drosophila melanogaster. I. Maternal effect mutations., Genetics, vol. 121, no. 1, pp. 101-17, 1989.
T. Schupbach and Wieschaus, E., Female sterile mutations on the second chromosome of Drosophila melanogaster. II. Mutations blocking oogenesis or altering egg morphology., Genetics, vol. 129, no. 4, pp. 1119-36, 1991.
T. Schupbach and Wieschaus, E., Germline autonomy of maternal-effect mutations altering the embryonic body pattern of Drosophila., Dev Biol, vol. 113, no. 2, pp. 443-8, 1986.
T. Schupbach and Wieschaus, E., Probing for gene specificity in epithelial development., Int J Dev Biol, vol. 42, no. 3, pp. 249-55, 1998.
M. Schumer, Cui, R., Boussau, B., Walter, R., Rosenthal, G., and Andolfatto, P., An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences., Evolution, vol. 67, no. 4, pp. 1155-68, 2013.
M. Schumer, Rosenthal, G. G., and Andolfatto, P., How common is homoploid hybrid speciation?, Evolution, vol. 68, no. 6, pp. 1553-60, 2014.
M. Schumer, Cui, R., Powell, D. L., Dresner, R., Rosenthal, G. G., and Andolfatto, P., High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species., Elife, vol. 3, 2014.
A. F. Schober, Mathis, A. D., Ingle, C., Park, J. O., Chen, L., Rabinowitz, J. D., Junier, I., Rivoire, O., and Reynolds, K. A., A Two-Enzyme Adaptive Unit within Bacterial Folate Metabolism., Cell Rep, vol. 27, no. 11, pp. 3359-3370.e7, 2019.
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E. Schneidman, Bialek, W., and Berry, M. J., Synergy, redundancy, and independence in population codes., J Neurosci, vol. 23, no. 37, pp. 11539-53, 2003.
E. Schneidman, Puchalla, J. L., Segev, R., Harris, R. A., Bialek, W., and Berry, M. J., Synergy from silence in a combinatorial neural code., J Neurosci, vol. 31, no. 44, pp. 15732-41, 2011.
J. V. Schmidt, Levorse, J. M., and Tilghman, S. M., Enhancer competition between H19 and Igf2 does not mediate their imprinting., Proc Natl Acad Sci U S A, vol. 96, no. 17, pp. 9733-8, 1999.
J. V. Schmidt, Matteson, P. G., Jones, B. K., Guan, X. J., and Tilghman, S. M., The Dlk1 and Gtl2 genes are linked and reciprocally imprinted., Genes Dev, vol. 14, no. 16, pp. 1997-2002, 2000.
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E. D. Schejter and Wieschaus, E., bottleneck acts as a regulator of the microfilament network governing cellularization of the Drosophila embryo., Cell, vol. 75, no. 2, pp. 373-85, 1993.
E. D. Schejter, Rose, L. S., Postner, M. A., and Wieschaus, E., Role of the zygotic genome in the restructuring of the actin cytoskeleton at the cycle-14 transition during Drosophila embryogenesis., Cold Spring Harb Symp Quant Biol, vol. 57, pp. 653-9, 1992.
M. E. Schaner, Ross, D. T., Ciaravino, G., Sorlie, T., Troyanskaya, O., Diehn, M., Wang, Y. C., Duran, G. E., Sikic, T. L., Caldeira, S., Skomedal, H., Tu, I. - P., Hernandez-Boussard, T., Johnson, S. W., O'Dwyer, P. J., Fero, M. J., Kristensen, G. B., Borresen-Dale, A. - L., Hastie, T., Tibshirani, R., van de Rijn, M., Teng, N. N., Longacre, T. A., Botstein, D., Brown, P. O., and Sikic, B. I., Gene expression patterns in ovarian carcinomas., Mol Biol Cell, vol. 14, no. 11, pp. 4376-86, 2003.
J. Schacherer, Ruderfer, D. M., Gresham, D., Dolinski, K., Botstein, D., and Kruglyak, L., Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains., PLoS One, vol. 2, no. 3, p. e322, 2007.
K. Sayama, Diehn, M., Matsuda, K., Lunderius, C., Tsai, M., Tam, S. - Y., Botstein, D., Brown, P. O., and Galli, S. J., Transcriptional response of human mast cells stimulated via the Fc(epsilon)RI and identification of mast cells as a source of IL-11., BMC Immunol, vol. 3, p. 5, 2002.
D. Sargin, Chottekalapanda, R. U., Perit, K. E., Yao, V., Chu, D., Sparks, D. W., Kalik, S., Power, S. K., Troyanskaya, O. G., Schmidt, E. F., Greengard, P., and Lambe, E. K., Mapping the physiological and molecular markers of stress and SSRI antidepressant treatment in S100a10 corticostriatal neurons., Mol Psychiatry, 2019.
L. L. Sandell, Guan, X. - J., Ingram, R., and Tilghman, S. M., Gatm, a creatine synthesis enzyme, is imprinted in mouse placenta., Proc Natl Acad Sci U S A, vol. 100, no. 8, pp. 4622-7, 2003.
C. Sample and Shvartsman, S. Y., Multiscale modeling of diffusion in the early Drosophila embryo., Proc Natl Acad Sci U S A, vol. 107, no. 22, pp. 10092-6, 2010.
L. Salwinski, Licata, L., Winter, A., Thorneycroft, D., Khadake, J., Ceol, A., Aryamontri, A. Chatr, Oughtred, R., Livstone, M., Boucher, L., Botstein, D., Dolinski, K., Berardini, T., Huala, E., Tyers, M., Eisenberg, D., Cesareni, G., and Hermjakob, H., Recurated protein interaction datasets., Nat Methods, vol. 6, no. 12, pp. 860-1, 2009.
A. J. Saldanha, Brauer, M. J., and Botstein, D., Nutritional homeostasis in batch and steady-state culture of yeast., Mol Biol Cell, vol. 15, no. 9, pp. 4089-104, 2004.
B. Sabass, Koch, M. D., Liu, G., Stone, H. A., and Shaevitz, J. W., Force generation by groups of migrating bacteria., Proc Natl Acad Sci U S A, vol. 114, no. 28, pp. 7266-7271, 2017.