List of Faculty Publications

Below is a list of Faculty publications imported from PubMed or manually added. By default, publications are sorted by year with titles displayed in ascending alphabetical order.
Shortcuts: Wühr, Martin | Wingreen, Ned | Wieschaus, Eric | Troyanskaya, Olga | Tilghman, Shirley | Storey, John | Singh, Mona | Shvartsman, Stanislav | Shaevitz, Joshua | Rabinowitz, Joshua | Murphy, Coleen | Levine, Michael {Levine, Michael S.} | Gregor, Thomas | Botstein, David | Bialek, William | Ayroles, Julien | Andolfatto, Peter | Akey, Joshua

Filters: Author is Chazelle, Bernard  [Clear All Filters]
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Structure-Activity Relationship
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Software
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Sequence Homology, Amino Acid
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Sequence Analysis, Protein
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Sequence Alignment
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Saccharomyces cerevisiae Proteins
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Saccharomyces cerevisiae
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Proteomics
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Proteins
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
Protein Structure, Secondary
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Protein Interaction Mapping
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Protein Interaction Domains and Motifs
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Protein Folding
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Programming, Linear
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Pattern Recognition, Automated
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Numerical Analysis, Computer-Assisted
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Neural Networks (Computer)
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Molecular Sequence Data
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Models, Theoretical
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
Models, Statistical
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
Models, Chemical
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Models, Biological
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Intracellular Signaling Peptides and Proteins
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Humans
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Genomics
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
Fungal Proteins
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
Evolution, Molecular
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
Databases, Protein
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Computer Simulation
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Computational Biology
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.
Carrier Proteins
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Animals
E. Banks, Nabieva, E., Chazelle, B., and Singh, M., “Organization of physical interactomes as uncovered by network schemas.”, PLoS Comput Biol, vol. 4, no. 10, p. e1000203, 2008.
Amino Acid Sequence
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
Algorithms
C. L. Kingsford, Chazelle, B., and Singh, M., “Solving and analyzing side-chain positioning problems using linear and integer programming.”, Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
E. Nabieva, Jim, K., Agarwal, A., Chazelle, B., and Singh, M., “Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.”, Bioinformatics, vol. 21 Suppl 1, pp. i302-10, 2005.