List of Faculty Publications

Below is a list of Faculty publications imported from PubMed or manually added. By default, publications are sorted by year with titles displayed in ascending alphabetical order.
Shortcuts: Wühr, Martin | Wingreen, Ned | Wieschaus, Eric | Troyanskaya, Olga | Tilghman, Shirley | Storey, John | Singh, Mona | Shvartsman, Stanislav | Shaevitz, Joshua | Rabinowitz, Joshua | Murphy, Coleen | Levine, Michael {Levine, Michael S.} | Gregor, Thomas | Botstein, David | Bialek, William | Ayroles, Julien | Andolfatto, Peter | Akey, Joshua

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
J. Fan, Kamphorst, J. J., Mathew, R., Chung, M. K., White, E., Shlomi, T., and Rabinowitz, J. D., Glutamine-driven oxidative phosphorylation is a major ATP source in transformed mammalian cells in both normoxia and hypoxia., Mol Syst Biol, vol. 9, p. 712, 2013.
S. Zemel, Bartolomei, M. S., and Tilghman, S. M., Physical linkage of two mammalian imprinted genes, H19 and insulin-like growth factor 2., Nat Genet, vol. 2, no. 1, pp. 61-5, 1992.
L. Christiaen, Wagner, E., Shi, W., and Levine, M., X-gal staining of electroporated sea squirt (Ciona) embryos., Cold Spring Harb Protoc, vol. 2009, no. 12, p. pdb.prot5346, 2009.
P. R. Haddrill, Bachtrog, D., and Andolfatto, P., Positive and negative selection on noncoding DNA in Drosophila simulans., Mol Biol Evol, vol. 25, no. 9, pp. 1825-34, 2008.
T. J. Vasicek, Zeng, L., Guan, X. J., Zhang, T., Costantini, F., and Tilghman, S. M., Two dominant mutations in the mouse fused gene are the result of transposon insertions., Genetics, vol. 147, no. 2, pp. 777-86, 1997.
J. H. Thomas and Wieschaus, E., src64 and tec29 are required for microfilament contraction during Drosophila cellularization., Development, vol. 131, no. 4, pp. 863-71, 2004.
L. C. Osborne, Hohl, S. S., Bialek, W., and Lisberger, S. G., Time course of precision in smooth-pursuit eye movements of monkeys., J Neurosci, vol. 27, no. 11, pp. 2987-98, 2007.
P. A. Leighton, Saam, J. R., Ingram, R. S., Stewart, C. L., and Tilghman, S. M., An enhancer deletion affects both H19 and Igf2 expression., Genes Dev, vol. 9, no. 17, pp. 2079-89, 1995.
J. J. Zartman, Kanodia, J. S., Yakoby, N., Schafer, X., Watson, C., Schlichting, K., Dahmann, C., and Shvartsman, S. Y., Expression patterns of cadherin genes in Drosophila oogenesis., Gene Expr Patterns, vol. 9, no. 1, pp. 31-6, 2009.
V. Lakhina, Arey, R. N., Kaletsky, R., Kauffman, A., Stein, G., Keyes, W., Xu, D., and Murphy, C. T., Genome-wide functional analysis of CREB/long-term memory-dependent transcription reveals distinct basal and memory gene expression programs., Neuron, vol. 85, no. 2, pp. 330-45, 2015.
S. M. Tilghman, Bartolomei, M. S., Webber, A. L., Brunkow, M. E., Saam, J., Leighton, P. A., Pfeifer, K., and Zemel, S., Parental imprinting of the H19 and Igf2 genes in the mouse., Cold Spring Harb Symp Quant Biol, vol. 58, pp. 287-95, 1993.
I. - P. Tu, Schaner, M., Diehn, M., Sikic, B. I., Brown, P. O., Botstein, D., and Fero, M. J., A method for detecting and correcting feature misidentification on expression microarrays., BMC Genomics, vol. 5, p. 64, 2004.
L. S. Cheung, Simakov, D. S. A., Fuchs, A., Pyrowolakis, G., and Shvartsman, S. Y., Dynamic model for the coordination of two enhancers of broad by EGFR signaling., Proc Natl Acad Sci U S A, vol. 110, no. 44, pp. 17939-44, 2013.
R. DiLoreto and Murphy, C. T., The cell biology of aging., Mol Biol Cell, vol. 26, no. 25, pp. 4524-31, 2015.
L. Peña-Castillo, Tasan, M., Myers, C. L., Lee, H., Joshi, T., Zhang, C., Guan, Y., Leone, M., Pagnani, A., Kim, W. Kyu, Krumpelman, C., Tian, W., Obozinski, G., Qi, Y., Mostafavi, S., Lin, G. Ning, Berriz, G. F., Gibbons, F. D., Lanckriet, G., Qiu, J., Grant, C., Barutcuoglu, Z., Hill, D. P., Warde-Farley, D., Grouios, C., Ray, D., Blake, J. A., Deng, M., Jordan, M. I., Noble, W. S., Morris, Q., Klein-Seetharaman, J., Bar-Joseph, iv, Z., Chen, T., Sun, F., Troyanskaya, O. G., Marcotte, E. M., Xu, D., Hughes, T. R., and Roth, F. P., A critical assessment of Mus musculus gene function prediction using integrated genomic evidence., Genome Biol, vol. 9 Suppl 1, p. S2, 2008.
N. S. Tolwinski, Wehrli, M., Rives, A., Erdeniz, N., DiNardo, S., and Wieschaus, E., Wg/Wnt signal can be transmitted through arrow/LRP5,6 and Axin independently of Zw3/Gsk3beta activity., Dev Cell, vol. 4, no. 3, pp. 407-18, 2003.
K. M. Kapheim, Pan, H., Li, C., Salzberg, S. L., Puiu, D., Magoc, T., Robertson, H. M., Hudson, M. E., Venkat, A., Fischman, B. J., Hernandez, A., Yandell, M., Ence, D., Holt, C., Yocum, G. D., Kemp, W. P., Bosch, J., Waterhouse, R. M., Zdobnov, E. M., Stolle, E., F Kraus, B., Helbing, S., Moritz, R. F. A., Glastad, K. M., Hunt, B. G., Goodisman, M. A. D., Hauser, F., Grimmelikhuijzen, C. J. P., Pinheiro, D. Guariz, Nunes, F. Morais Fra, Soares, M. Prioli Mir, Tanaka, É. Donato, Simões, Z. Luz Paulin, Hartfelder, K., Evans, J. D., Barribeau, S. M., Johnson, R. M., Massey, J. H., Southey, B. R., Hasselmann, M., Hamacher, D., Biewer, M., Kent, C. F., Zayed, A., Blatti, C., Sinha, S., J Johnston, S., Hanrahan, S. J., Kocher, S. D., Wang, J., Robinson, G. E., and Zhang, G., Social evolution. Genomic signatures of evolutionary transitions from solitary to group living., Science, vol. 348, no. 6239, pp. 1139-43, 2015.
V. Hilgers, Lemke, S. B., and Levine, M., ELAV mediates 3' UTR extension in the Drosophila nervous system., Genes Dev, vol. 26, no. 20, pp. 2259-64, 2012.
A. Di Gregorio, Harland, R. M., Levine, M., and Casey, E. Silva, Tail morphogenesis in the ascidian, Ciona intestinalis, requires cooperation between notochord and muscle., Dev Biol, vol. 244, no. 2, pp. 385-95, 2002.
J. V. Schmidt, Levorse, J. M., and Tilghman, S. M., Enhancer competition between H19 and Igf2 does not mediate their imprinting., Proc Natl Acad Sci U S A, vol. 96, no. 17, pp. 9733-8, 1999.
B. Lim, Samper, N., Lu, H., Rushlow, C., Jiménez, G., and Shvartsman, S. Y., Kinetics of gene derepression by ERK signaling., Proc Natl Acad Sci U S A, vol. 110, no. 25, pp. 10330-5, 2013.
M. Coppey, Boettiger, A. N., Berezhkovskii, A. M., and Shvartsman, S. Y., Nuclear trapping shapes the terminal gradient in the Drosophila embryo., Curr Biol, vol. 18, no. 12, pp. 915-9, 2008.
A. Di Gregorio and Levine, M., Analyzing gene regulation in ascidian embryos: new tools for new perspectives., Differentiation, vol. 70, no. 4-5, pp. 132-9, 2002.
O. G. Troyanskaya, Putting microarrays in a context: integrated analysis of diverse biological data., Brief Bioinform, vol. 6, no. 1, pp. 34-43, 2005.
E. Schneidman, Berry, M. J., Segev, R., and Bialek, W., Weak pairwise correlations imply strongly correlated network states in a neural population., Nature, vol. 440, no. 7087, pp. 1007-12, 2006.
N. S. Tolwinski and Wieschaus, E., Rethinking WNT signaling., Trends Genet, vol. 20, no. 4, pp. 177-81, 2004.
M. Markstein, Markstein, P., Markstein, V., and Levine, M. S., Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 99, no. 2, pp. 763-8, 2002.
N. Haupaix, Abitua, P. B., Sirour, C., Yasuo, H., Levine, M., and Hudson, C., Ephrin-mediated restriction of ERK1/2 activity delimits the number of pigment cells in the Ciona CNS., Dev Biol, vol. 394, no. 1, pp. 170-80, 2014.
P. A. Gibney, Hickman, M. J., Bradley, P. H., Matese, J. C., and Botstein, D., Phylogenetic portrait of the Saccharomyces cerevisiae functional genome., G3 (Bethesda), vol. 3, no. 8, pp. 1335-40, 2013.
T. Gregor, McGregor, A. P., and Wieschaus, E. F., Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos., Dev Biol, vol. 316, no. 2, pp. 350-8, 2008.
A. Erives and Levine, M., Coordinate enhancers share common organizational features in the Drosophila genome., Proc Natl Acad Sci U S A, vol. 101, no. 11, pp. 3851-6, 2004.
A. Pane, Jiang, P., Zhao, D. Yanling, Singh, M., and Schüpbach, T., The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline., EMBO J, vol. 30, no. 22, pp. 4601-15, 2011.
J. P. Bothma, Garcia, H. G., Ng, S., Perry, M. W., Gregor, T., and Levine, M., Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo., Elife, vol. 4, 2015.
R. M. Cooper, Wingreen, N. S., and Cox, E. C., An excitable cortex and memory model successfully predicts new pseudopod dynamics., PLoS One, vol. 7, no. 3, p. e33528, 2012.
Y. Kim, Iagovitina, A., Ishihara, K., Fitzgerald, K. M., Deplancke, B., Papatsenko, D., and Shvartsman, S. Y., Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo., Chaos, vol. 23, no. 2, p. 025105, 2013.
A. S. Futran, A Link, J., Seger, R., and Shvartsman, S. Y., ERK as a model for systems biology of enzyme kinetics in cells., Curr Biol, vol. 23, no. 21, pp. R972-9, 2013.
M. Levine, Cattoglio, C., and Tjian, R., Looping back to leap forward: transcription enters a new era., Cell, vol. 157, no. 1, pp. 13-25, 2014.
J. Parsch, Novozhilov, S., Saminadin-Peter, S. S., Wong, K. M., and Andolfatto, P., On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila., Mol Biol Evol, vol. 27, no. 6, pp. 1226-34, 2010.
A. Stathopoulos and Levine, M., Linear signaling in the Toll-Dorsal pathway of Drosophila: activated Pelle kinase specifies all threshold outputs of gene expression while the bHLH protein Twist specifies a subset., Development, vol. 129, no. 14, pp. 3411-9, 2002.
T. F. C. Mackay, Richards, S., Stone, E. A., Barbadilla, A., Ayroles, J. F., Zhu, D., Casillas, S., Han, Y., Magwire, M. M., Cridland, J. M., Richardson, M. F., Anholt, R. R. H., Barrón, M., Bess, C., Blankenburg, K. Petra, Carbone, M. Anna, Castellano, D., Chaboub, L., Duncan, L., Harris, Z., Javaid, M., Jayaseelan, J. Christina, Jhangiani, S. N., Jordan, K. W., Lara, F., Lawrence, F., Lee, S. L., Librado, P., Linheiro, R. S., Lyman, R. F., Mackey, A. J., Munidasa, M., Muzny, D. Marie, Nazareth, L., Newsham, I., Perales, L., Pu, L. - L., Qu, C., Ràmia, M., Reid, J. G., Rollmann, S. M., Rozas, J., Saada, N., Turlapati, L., Worley, K. C., Wu, Y. - Q., Yamamoto, A., Zhu, Y., Bergman, C. M., Thornton, K. R., Mittelman, D., and Gibbs, R. A., The Drosophila melanogaster Genetic Reference Panel., Nature, vol. 482, no. 7384, pp. 173-8, 2012.
P. Barron Abitua, T Gainous, B., Kaczmarczyk, A. N., Winchell, C. J., Hudson, C., Kamata, K., Nakagawa, M., Tsuda, M., Kusakabe, T. G., and Levine, M., The pre-vertebrate origins of neurogenic placodes., Nature, vol. 524, no. 7566, pp. 462-5, 2015.
A. Stathopoulos and Levine, M., Localized repressors delineate the neurogenic ectoderm in the early Drosophila embryo., Dev Biol, vol. 280, no. 2, pp. 482-93, 2005.
N. Novoradovskaya, Whitfield, M. L., Basehore, L. S., Novoradovsky, A., Pesich, R., Usary, J., Karaca, M., Wong, W. K., Aprelikova, O., Fero, M., Perou, C. M., Botstein, D., and Braman, J., Universal Reference RNA as a standard for microarray experiments., BMC Genomics, vol. 5, no. 1, p. 20, 2004.
D. N. Keys, Levine, M., Harland, R. M., and Wallingford, J. B., Control of intercalation is cell-autonomous in the notochord of Ciona intestinalis., Dev Biol, vol. 246, no. 2, pp. 329-40, 2002.
W. Shi, Peyrot, S. M., Munro, E., and Levine, M., FGF3 in the floor plate directs notochord convergent extension in the Ciona tadpole., Development, vol. 136, no. 1, pp. 23-8, 2009.
Y. Zhang, Kurupati, R., Liu, L., Zhou, X. Yang, Zhang, G., Hudaihed, A., Filisio, F., Giles-Davis, W., Xu, X., Karakousis, G. C., Schuchter, L. M., Xu, W., Amaravadi, R., Xiao, M., Sadek, N., Krepler, C., Herlyn, M., Freeman, G. J., Rabinowitz, J. D., and Ertl, H. C. J., Enhancing CD8(+) T Cell Fatty Acid Catabolism within a Metabolically Challenging Tumor Microenvironment Increases the Efficacy of Melanoma Immunotherapy., Cancer Cell, vol. 32, no. 3, pp. 377-391.e9, 2017.
V. S. Chopra, Hendrix, D. A., Core, L. J., Tsui, C., Lis, J. T., and Levine, M., The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo., Mol Cell, vol. 42, no. 6, pp. 837-44, 2011.
C. T. Murphy, The search for DAF-16/FOXO transcriptional targets: approaches and discoveries., Exp Gerontol, vol. 41, no. 10, pp. 910-21, 2006.
H. Yoo-Warren, Pachnis, V., Ingram, R. S., and Tilghman, S. M., Two regulatory domains flank the mouse H19 gene., Mol Cell Biol, vol. 8, no. 11, pp. 4707-15, 1988.
S. Y. Shvartsman, Muratov, C. B., and Lauffenburger, D. A., Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis., Development, vol. 129, no. 11, pp. 2577-89, 2002.
N. S. Tolwinski and Wieschaus, E., A nuclear escort for beta-catenin., Nat Cell Biol, vol. 6, no. 7, pp. 579-80, 2004.
B. K. Jones, Levorse, J., and Tilghman, S. M., A human H19 transgene exhibits impaired paternal-specific imprint acquisition and maintenance in mice., Hum Mol Genet, vol. 11, no. 4, pp. 411-8, 2002.
J. Lembong, Yakoby, N., and Shvartsman, S. Y., Pattern formation by dynamically interacting network motifs., Proc Natl Acad Sci U S A, vol. 106, no. 9, pp. 3213-8, 2009.
D. T. Burke, Rossi, J. M., Leung, J., Koos, D. S., and Tilghman, S. M., A mouse genomic library of yeast artificial chromosome clones., Mamm Genome, vol. 1, no. 1, p. 65, 1991.
E. Wieschaus and Nöthiger, R., The role of the transformer genes in the development of genitalia and analia of Drosophila melanogaster., Dev Biol, vol. 90, no. 2, pp. 320-34, 1982.
S. C. Little, Tikhonov, M., and Gregor, T., Precise developmental gene expression arises from globally stochastic transcriptional activity., Cell, vol. 154, no. 4, pp. 789-800, 2013.
C. Nusslein-Volhard and Wieschaus, E., Mutations affecting segment number and polarity in Drosophila., Nature, vol. 287, no. 5785, pp. 795-801, 1980.
E. Wieschaus, Cell lineage relationships in the Drosophila embryo., Results Probl Cell Differ, vol. 9, pp. 97-118, 1978.
P. Morize, Christiansen, A. E., Costa, M., Parks, S., and Wieschaus, E., Hyperactivation of the folded gastrulation pathway induces specific cell shape changes., Development, vol. 125, no. 4, pp. 589-97, 1998.
M. Markstein and Levine, M., Decoding cis-regulatory DNAs in the Drosophila genome., Curr Opin Genet Dev, vol. 12, no. 5, pp. 601-6, 2002.
B. K. Jones, Levorse, J. M., and Tilghman, S. M., Igf2 imprinting does not require its own DNA methylation or H19 RNA., Genes Dev, vol. 12, no. 14, pp. 2200-7, 1998.
J. M. Goodliffe, Cole, M. D., and Wieschaus, E., Coordinated regulation of Myc trans-activation targets by Polycomb and the Trithorax group protein Ash1., BMC Mol Biol, vol. 8, p. 40, 2007.
B. Riggleman, Schedl, P., and Wieschaus, E., Spatial expression of the Drosophila segment polarity gene armadillo is posttranscriptionally regulated by wingless., Cell, vol. 63, no. 3, pp. 549-60, 1990.
A. Stolfi and Levine, M., Neuronal subtype specification in the spinal cord of a protovertebrate., Development, vol. 138, no. 5, pp. 995-1004, 2011.
P. B. Vrana, Matteson, P. G., Schmidt, J. V., Ingram, R. S., Joyce, A., Prince, K. L., Dewey, M. J., and Tilghman, S. M., Genomic imprinting of a placental lactogen gene in Peromyscus., Dev Genes Evol, vol. 211, no. 11, pp. 523-32, 2001.
W. M. Shaw, Luo, S., Landis, J., Ashraf, J., and Murphy, C. T., The C. elegans TGF-beta Dauer pathway regulates longevity via insulin signaling., Curr Biol, vol. 17, no. 19, pp. 1635-45, 2007.
M. J. O'Neill, Ingram, R. S., Vrana, P. B., and Tilghman, S. M., Allelic expression of IGF2 in marsupials and birds., Dev Genes Evol, vol. 210, no. 1, pp. 18-20, 2000.
H. A. Müller, Samanta, R., and Wieschaus, E., Wingless signaling in the Drosophila embryo: zygotic requirements and the role of the frizzled genes., Development, vol. 126, no. 3, pp. 577-86, 1999.
T. Gregor, Bialek, W., van Steveninck, R. R. de Ruyte, Tank, D. W., and Wieschaus, E. F., Diffusion and scaling during early embryonic pattern formation., Proc Natl Acad Sci U S A, vol. 102, no. 51, pp. 18403-7, 2005.
J. D. Jensen, Thornton, K. R., and Andolfatto, P., An approximate bayesian estimator suggests strong, recurrent selective sweeps in Drosophila., PLoS Genet, vol. 4, no. 9, p. e1000198, 2008.
L. C. Osborne, Palmer, S. E., Lisberger, S. G., and Bialek, W., The neural basis for combinatorial coding in a cortical population response., J Neurosci, vol. 28, no. 50, pp. 13522-31, 2008.
J. O. Dubuis, Samanta, R., and Gregor, T., Accurate measurements of dynamics and reproducibility in small genetic networks., Mol Syst Biol, vol. 9, p. 639, 2013.
T. T. Hu, Eisen, M. B., Thornton, K. R., and Andolfatto, P., A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence., Genome Res, vol. 23, no. 1, pp. 89-98, 2013.
T. J. Levario, Zhan, M., Lim, B., Shvartsman, S. Y., and Lu, H., Microfluidic trap array for massively parallel imaging of Drosophila embryos., Nat Protoc, vol. 8, no. 4, pp. 721-36, 2013.
L. Christiaen, Wagner, E., Shi, W., and Levine, M., Isolation of individual cells and tissues from electroporated sea squirt (Ciona) embryos by fluorescence-activated cell sorting (FACS)., Cold Spring Harb Protoc, vol. 2009, no. 12, p. pdb.prot5349, 2009.
M. Lagha, Bothma, J. P., Esposito, E., Ng, S., Stefanik, L., Tsui, C., Johnston, J., Chen, K., Gilmour, D. S., Zeitlinger, J., and Levine, M. S., Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo., Cell, vol. 153, no. 5, pp. 976-87, 2013.
A. Stathopoulos and Levine, M., Whole-genome expression profiles identify gene batteries in Drosophila., Dev Cell, vol. 3, no. 4, pp. 464-5, 2002.
K. R. Christie, Weng, S., Balakrishnan, R., Costanzo, M. C., Dolinski, K., Dwight, S. S., Engel, S. R., Feierbach, B., Fisk, D. G., Hirschman, J. E., Hong, E. L., Issel-Tarver, L., Nash, R., Sethuraman, A., Starr, B., Theesfeld, C. L., Andrada, R., Binkley, G., Dong, Q., Lane, C., Schroeder, M., Botstein, D., and J Cherry, M., Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms., Nucleic Acids Res, vol. 32, no. Database issue, pp. D311-4, 2004.
L. J. Kurihara, Semenova, E., Levorse, J. M., and Tilghman, S. M., Expression and functional analysis of Uch-L3 during mouse development., Mol Cell Biol, vol. 20, no. 7, pp. 2498-504, 2000.
C. Rauskolb and Wieschaus, E., Coordinate regulation of downstream genes by extradenticle and the homeotic selector proteins., EMBO J, vol. 13, no. 15, pp. 3561-9, 1994.
M. Peifer, McCrea, P. D., Green, K. J., Wieschaus, E., and Gumbiner, B. M., The vertebrate adhesive junction proteins beta-catenin and plakoglobin and the Drosophila segment polarity gene armadillo form a multigene family with similar properties., J Cell Biol, vol. 118, no. 3, pp. 681-91, 1992.
A. Vincent, Blankenship, J. T., and Wieschaus, E., Integration of the head and trunk segmentation systems controls cephalic furrow formation in Drosophila., Development, vol. 124, no. 19, pp. 3747-54, 1997.
S. M. Tilghman, The sins of the fathers and mothers: genomic imprinting in mammalian development., Cell, vol. 96, no. 2, pp. 185-93, 1999.
B. Callahan, Neher, R. A., Bachtrog, D., Andolfatto, P., and Shraiman, B. I., Correlated evolution of nearby residues in Drosophilid proteins., PLoS Genet, vol. 7, no. 2, p. e1001315, 2011.
S. D. Kocher, Ayroles, J. F., Stone, E. A., and Grozinger, C. M., Individual variation in pheromone response correlates with reproductive traits and brain gene expression in worker honey bees., PLoS One, vol. 5, no. 2, p. e9116, 2010.
Y. - C. Wang, Khan, Z., Kaschube, M., and Wieschaus, E. F., Differential positioning of adherens junctions is associated with initiation of epithelial folding., Nature, vol. 484, no. 7394, pp. 390-3, 2012.
N. D. Trinklein, Murray, J. I., Hartman, S. J., Botstein, D., and Myers, R. M., The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response., Mol Biol Cell, vol. 15, no. 3, pp. 1254-61, 2004.
X. Lu, Li, J. M., Elemento, O., Tavazoie, S., and Wieschaus, E. F., Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition., Development, vol. 136, no. 12, pp. 2101-10, 2009.
J. A. Zallen and Wieschaus, E., Patterned gene expression directs bipolar planar polarity in Drosophila., Dev Cell, vol. 6, no. 3, pp. 343-55, 2004.
P. Andolfatto, Davison, D., Erezyilmaz, D., Hu, T. T., Mast, J., Sunayama-Morita, T., and Stern, D. L., Multiplexed shotgun genotyping for rapid and efficient genetic mapping., Genome Res, vol. 21, no. 4, pp. 610-7, 2011.
J. Bothma and Levine, M., Development: lights, camera, action--the Drosophila embryo goes live!, Curr Biol, vol. 23, no. 21, pp. R965-7, 2013.
P. Jiang, Singh, M., and Coller, H. A., Computational assessment of the cooperativity between RNA binding proteins and MicroRNAs in Transcript Decay., PLoS Comput Biol, vol. 9, no. 5, p. e1003075, 2013.
X. Lu, Drocco, J., and Wieschaus, E. F., Cell cycle regulation via inter-nuclear communication during the early embryonic development of Drosophila melanogaster., Cell Cycle, vol. 9, no. 14, pp. 2908-10, 2010.
Y. Pritykin and Singh, M., Simple topological features reflect dynamics and modularity in protein interaction networks., PLoS Comput Biol, vol. 9, no. 10, p. e1003243, 2013.
J. A. Emerson, Vacher, J., Cirillo, L. A., Tilghman, S. M., and Tyner, A. L., The zonal expression of alpha-fetoprotein transgenes in the livers of adult mice., Dev Dyn, vol. 195, no. 1, pp. 55-66, 1992.
F. Biemar, Zinzen, R., Ronshaugen, M., Sementchenko, V., J Manak, R., and Levine, M. S., Spatial regulation of microRNA gene expression in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 44, pp. 15907-11, 2005.
J. F. Ayroles, Laflamme, B. A., Stone, E. A., Wolfner, M. F., and Mackay, T. F. C., Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks., Genet Res (Camb), vol. 93, no. 6, pp. 387-95, 2011.
L. C. Osborne, Lisberger, S. G., and Bialek, W., A sensory source for motor variation., Nature, vol. 437, no. 7057, pp. 412-6, 2005.
P. T. Merrill, Sweeton, D., and Wieschaus, E., Requirements for autosomal gene activity during precellular stages of Drosophila melanogaster., Development, vol. 104, no. 3, pp. 495-509, 1988.
J. Mohler and Wieschaus, E. F., Bicaudal mutations of Drosophila melanogaster: alteration of blastoderm cell fate., Cold Spring Harb Symp Quant Biol, vol. 50, pp. 105-11, 1985.
J. S. Kanodia, Rikhy, R., Kim, Y., Lund, V. K., DeLotto, R., Lippincott-Schwartz, J., and Shvartsman, S. Y., Dynamics of the Dorsal morphogen gradient., Proc Natl Acad Sci U S A, vol. 106, no. 51, pp. 21707-12, 2009.
C. Y. Ewald, Landis, J. N., Abate, J. Porter, Murphy, C. T., and T Blackwell, K., Dauer-independent insulin/IGF-1-signalling implicates collagen remodelling in longevity., Nature, vol. 519, no. 7541, pp. 97-101, 2015.
J. Zhou, Schor, I. E., Yao, V., Theesfeld, C. L., Marco-Ferreres, R., Tadych, A., Furlong, E. E. M., and Troyanskaya, O. G., Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development., PLoS Genet, vol. 15, no. 9, p. e1008382, 2019.
G. Jiménez, Shvartsman, S. Y., and Paroush, Z. 'ev, The Capicua repressor--a general sensor of RTK signaling in development and disease., J Cell Sci, vol. 125, no. Pt 6, pp. 1383-91, 2012.
C. D. van Raamsdonk and Tilghman, S. M., Optimizing the detection of nascent transcripts by RNA fluorescence in situ hybridization., Nucleic Acids Res, vol. 29, no. 8, pp. E42-2, 2001.
A. T. Hark, Schoenherr, C. J., Katz, D. J., Ingram, R. S., Levorse, J. M., and Tilghman, S. M., CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus., Nature, vol. 405, no. 6785, pp. 486-9, 2000.
J. P. Bothma, Levine, M., and Boettiger, A., Morphogen gradients: limits to signaling or limits to measurement?, Curr Biol, vol. 20, no. 5, pp. R232-4, 2010.
C. Shi and Murphy, C. T., Mating induces shrinking and death in Caenorhabditis mothers., Science, vol. 343, no. 6170, pp. 536-40, 2014.
S. M. Tilghman, DNA methylation: a phoenix rises., Proc Natl Acad Sci U S A, vol. 90, no. 19, pp. 8761-2, 1993.
S. Li, Stone, H. A., and Murphy, C. T., A microfluidic device and automatic counting system for the study of C. elegans reproductive aging., Lab Chip, vol. 15, no. 2, pp. 524-31, 2015.
The Gene Ontology in 2010: extensions and refinements., Nucleic Acids Res, vol. 38, no. Database issue, pp. D331-5, 2010.
P. Jumbo-Lucioni, Ayroles, J. F., Chambers, M. Moses, Jordan, K. W., Leips, J., Mackay, T. Fc, and De Luca, M., Systems genetics analysis of body weight and energy metabolism traits in Drosophila melanogaster., BMC Genomics, vol. 11, p. 297, 2010.
A. L. Webber, Ingram, R. S., Levorse, J. M., and Tilghman, S. M., Location of enhancers is essential for the imprinting of H19 and Igf2 genes., Nature, vol. 391, no. 6668, pp. 711-5, 1998.
D. Sweeton, Parks, S., Costa, M., and Wieschaus, E., Gastrulation in Drosophila: the formation of the ventral furrow and posterior midgut invaginations., Development, vol. 112, no. 3, pp. 775-89, 1991.
W. J. Gehring, Wieschaus, E., and Holliger, M., The use of 'normal' and 'transformed' gynandromorphs in mapping the primordial germ cells and the gonadal mesoderm in Drosophila., J Embryol Exp Morphol, vol. 35, no. 3, pp. 607-16, 1976.
E. Wieschaus, Perrimon, N., and Finkelstein, R., orthodenticle activity is required for the development of medial structures in the larval and adult epidermis of Drosophila., Development, vol. 115, no. 3, pp. 801-11, 1992.
M. Levine and Tjian, R., Transcription regulation and animal diversity., Nature, vol. 424, no. 6945, pp. 147-51, 2003.
J. P. Huelsenbeck and Andolfatto, P., Inference of population structure under a Dirichlet process model., Genetics, vol. 175, no. 4, pp. 1787-802, 2007.
R. Menon, Otto, E. A., Kokoruda, A., Zhou, J., Zhang, Z., Yoon, E., Chen, Y. - C., Troyanskaya, O., Spence, J. R., Kretzler, M., and Cebrián, C., Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney., Development, vol. 145, no. 16, 2018.
J. Cowden and Levine, M., The Snail repressor positions Notch signaling in the Drosophila embryo., Development, vol. 129, no. 7, pp. 1785-93, 2002.
N. Harafuji, Keys, D. N., and Levine, M., Genome-wide identification of tissue-specific enhancers in the Ciona tadpole., Proc Natl Acad Sci U S A, vol. 99, no. 10, pp. 6802-5, 2002.
L. Christiaen, Davidson, B., Kawashima, T., Powell, W., Nolla, H., Vranizan, K., and Levine, M., The transcription/migration interface in heart precursors of Ciona intestinalis., Science, vol. 320, no. 5881, pp. 1349-52, 2008.
J. Wang, Kaletsky, R., Silva, M., Williams, A., Haas, L. A., Androwski, R. J., Landis, J. N., Patrick, C., Rashid, A., Santiago-Martinez, D., Gravato-Nobre, M., Hodgkin, J., Hall, D. H., Murphy, C. T., and Barr, M. M., Cell-Specific Transcriptional Profiling of Ciliated Sensory Neurons Reveals Regulators of Behavior and Extracellular Vesicle Biogenesis., Curr Biol, vol. 25, no. 24, pp. 3232-8, 2015.
J. A. Drocco, Grimm, O., Tank, D. W., and Wieschaus, E., Measurement and perturbation of morphogen lifetime: effects on gradient shape., Biophys J, vol. 101, no. 8, pp. 1807-15, 2011.
T. Schupbach and Wieschaus, E., Germline autonomy of maternal-effect mutations altering the embryonic body pattern of Drosophila., Dev Biol, vol. 113, no. 2, pp. 443-8, 1986.
J. S. Kanodia, Kim, Y., Tomer, R., Khan, Z., Chung, K., Storey, J. D., Lu, H., Keller, P. J., and Shvartsman, S. Y., A computational statistics approach for estimating the spatial range of morphogen gradients., Development, vol. 138, no. 22, pp. 4867-74, 2011.
R. Godbout, Ingram, R. S., and Tilghman, S. M., Fine-structure mapping of the three mouse alpha-fetoprotein gene enhancers., Mol Cell Biol, vol. 8, no. 3, pp. 1169-78, 1988.
M. Peifer, Rauskolb, C., Williams, M., Riggleman, B., and Wieschaus, E., The segment polarity gene armadillo interacts with the wingless signaling pathway in both embryonic and adult pattern formation., Development, vol. 111, no. 4, pp. 1029-43, 1991.
A. Stathopoulos and Levine, M., Dorsal gradient networks in the Drosophila embryo., Dev Biol, vol. 246, no. 1, pp. 57-67, 2002.
W. J. Pavan, Mac, S., Cheng, M., and Tilghman, S. M., Quantitative trait loci that modify the severity of spotting in piebald mice., Genome Res, vol. 5, no. 1, pp. 29-41, 1995.
V. C. Calhoun, Stathopoulos, A., and Levine, M., Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex., Proc Natl Acad Sci U S A, vol. 99, no. 14, pp. 9243-7, 2002.
D. Botstein, Lasker∼Koshland to genetics pioneer., Cell, vol. 158, no. 6, pp. 1230-2, 2014.
E. Wieschaus and Gehring, W., Clonal analysis of primordial disc cells in the early embryo of Drosophila melanogaster., Dev Biol, vol. 50, no. 2, pp. 249-63, 1976.
W. J. Pavan and Tilghman, S. M., Piebald lethal (sl) acts early to disrupt the development of neural crest-derived melanocytes., Proc Natl Acad Sci U S A, vol. 91, no. 15, pp. 7159-63, 1994.
O. Grimm and Wieschaus, E., The Bicoid gradient is shaped independently of nuclei., Development, vol. 137, no. 17, pp. 2857-62, 2010.
J. W. Shaevitz, Super-resolution for a 3D world., Nat Methods, vol. 5, no. 6, pp. 471-2, 2008.
D. Gresham, Dunham, M. J., and Botstein, D., Comparing whole genomes using DNA microarrays., Nat Rev Genet, vol. 9, no. 4, pp. 291-302, 2008.
S. Di Talia, She, R., Blythe, S. A., Lu, X., Zhang, Q. Fan, and Wieschaus, E. F., Posttranslational control of Cdc25 degradation terminates Drosophila's early cell-cycle program., Curr Biol, vol. 23, no. 2, pp. 127-32, 2013.
V. S. Chopra, Hong, J. - W., and Levine, M., Regulation of Hox gene activity by transcriptional elongation in Drosophila., Curr Biol, vol. 19, no. 8, pp. 688-93, 2009.
R. Godbout and Tilghman, S. M., Configuration of the alpha-fetoprotein regulatory domain during development., Genes Dev, vol. 2, no. 8, pp. 949-56, 1988.
L. Zwarts, Broeck, L. Vanden, Cappuyns, E., Ayroles, J. F., Magwire, M. M., Vulsteke, V., Clements, J., Mackay, T. F. C., and Callaerts, P., The genetic basis of natural variation in mushroom body size in Drosophila melanogaster., Nat Commun, vol. 6, p. 10115, 2015.
D. E. Coulter and Wieschaus, E., Gene activities and segmental patterning in Drosophila: analysis of odd-skipped and pair-rule double mutants., Genes Dev, vol. 2, no. 12B, pp. 1812-23, 1988.
S. Jeong, Rebeiz, M., Andolfatto, P., Werner, T., True, J., and Carroll, S. B., The evolution of gene regulation underlies a morphological difference between two Drosophila sister species., Cell, vol. 132, no. 5, pp. 783-93, 2008.
C. J. Nirschl, Suárez-Fariñas, M., Izar, B., Prakadan, S., Dannenfelser, R., Tirosh, I., Liu, Y., Zhu, Q., K Devi, S. P., Carroll, S. L., Chau, D., Rezaee, M., Kim, T. - G., Huang, R., Fuentes-Duculan, J., Song-Zhao, G. X., Gulati, N., Lowes, M. A., King, S. L., Quintana, F. J., Lee, Y. -suk, Krueger, J. G., Sarin, K. Y., Yoon, C. H., Garraway, L., Regev, iv, A., Shalek, A. K., Troyanskaya, O. G., and Anandasabapathy, N., IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment., Cell, vol. 170, no. 1, pp. 127-141.e15, 2017.
M. D. Chikina and Troyanskaya, O. G., Accurate quantification of functional analogy among close homologs., PLoS Comput Biol, vol. 7, no. 2, p. e1001074, 2011.
B. P. Berman, Nibu, Y., Pfeiffer, B. D., Tomancak, P., Celniker, S. E., Levine, M., Rubin, G. M., and Eisen, M. B., Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome., Proc Natl Acad Sci U S A, vol. 99, no. 2, pp. 757-62, 2002.
L. S. Rose and Wieschaus, E., The Drosophila cellularization gene nullo produces a blastoderm-specific transcript whose levels respond to the nucleocytoplasmic ratio., Genes Dev, vol. 6, no. 7, pp. 1255-68, 1992.
G. Tkačik, Callan, C. G., and Bialek, W., Information flow and optimization in transcriptional regulation., Proc Natl Acad Sci U S A, vol. 105, no. 34, pp. 12265-70, 2008.
A. S. Putnam, J Scriber, M., and Andolfatto, P., Discordant divergence times among Z-chromosome regions between two ecologically distinct swallowtail butterfly species., Evolution, vol. 61, no. 4, pp. 912-27, 2007.
D. Bachtrog and Andolfatto, P., Selection, recombination and demographic history in Drosophila miranda., Genetics, vol. 174, no. 4, pp. 2045-59, 2006.
N. N. Pavlova, Hui, S., Ghergurovich, J. M., Fan, J., Intlekofer, A. M., White, R. M., Rabinowitz, J. D., Thompson, C. B., and Zhang, J., As Extracellular Glutamine Levels Decline, Asparagine Becomes an Essential Amino Acid., Cell Metab, vol. 27, no. 2, pp. 428-438.e5, 2018.
C. I. Brannan, Dees, E. C., Ingram, R. S., and Tilghman, S. M., The product of the H19 gene may function as an RNA., Mol Cell Biol, vol. 10, no. 1, pp. 28-36, 1990.
M. H. Feuerman, Godbout, R., Ingram, R. S., and Tilghman, S. M., Tissue-specific transcription of the mouse alpha-fetoprotein gene promoter is dependent on HNF-1., Mol Cell Biol, vol. 9, no. 10, pp. 4204-12, 1989.
D. Mancini-Dinardo, Steele, S. J. S., Levorse, J. M., Ingram, R. S., and Tilghman, S. M., Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes., Genes Dev, vol. 20, no. 10, pp. 1268-82, 2006.
G. J. Stephens, Johnson-Kerner, B., Bialek, W., and Ryu, W. S., From modes to movement in the behavior of Caenorhabditis elegans., PLoS One, vol. 5, no. 11, p. e13914, 2010.
L. C. Osborne, Bialek, W., and Lisberger, S. G., Time course of information about motion direction in visual area MT of macaque monkeys., J Neurosci, vol. 24, no. 13, pp. 3210-22, 2004.
J. D. Rabinowitz and White, E., Autophagy and metabolism., Science, vol. 330, no. 6009, pp. 1344-8, 2010.
C. T. Murphy, McCarroll, S. A., Bargmann, C. I., Fraser, A., Kamath, R. S., Ahringer, J., Li, H., and Kenyon, C., Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans., Nature, vol. 424, no. 6946, pp. 277-83, 2003.
H. A. Müller and Wieschaus, E., armadillo, bazooka, and stardust are critical for early stages in formation of the zonula adherens and maintenance of the polarized blastoderm epithelium in Drosophila., J Cell Biol, vol. 134, no. 1, pp. 149-63, 1996.
J. D. Wall, Andolfatto, P., and Przeworski, M., Testing models of selection and demography in Drosophila simulans., Genetics, vol. 162, no. 1, pp. 203-16, 2002.
P. Andolfatto, Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome., Genome Res, vol. 17, no. 12, pp. 1755-62, 2007.
P. S. Minhas, Liu, L., Moon, P. K., Joshi, A. U., Dove, C., Mhatre, S., Contrepois, K., Wang, Q., Lee, B. A., Coronado, M., Bernstein, D., Snyder, M. P., Migaud, M., Majeti, R., Mochly-Rosen, D., Rabinowitz, J. D., and Andreasson, K. I., Macrophage de novo NAD synthesis specifies immune function in aging and inflammation., Nat Immunol, vol. 20, no. 1, pp. 50-63, 2019.
K. Senger, Armstrong, G. W., Rowell, W. J., Kwan, J. M., Markstein, M., and Levine, M., Immunity regulatory DNAs share common organizational features in Drosophila., Mol Cell, vol. 13, no. 1, pp. 19-32, 2004.
V. S. Chopra, Cande, J., Hong, J. - W., and Levine, M., Stalled Hox promoters as chromosomal boundaries., Genes Dev, vol. 23, no. 13, pp. 1505-9, 2009.
J. Doran Cande, Chopra, V. S., and Levine, M., Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum., Development, vol. 136, no. 18, pp. 3153-60, 2009.
T. M. Bartlett, Bratton, B. P., Duvshani, A., Miguel, A., Sheng, Y., Martin, N. R., Nguyen, J. P., Persat, A., Desmarais, S. M., VanNieuwenhze, M. S., Huang, K. Casey, Zhu, J., Shaevitz, J. W., and Gitai, Z., A Periplasmic Polymer Curves Vibrio cholerae and Promotes Pathogenesis., Cell, vol. 168, no. 1-2, pp. 172-185.e15, 2017.
K. C. Rowe, Singhal, S., Macmanes, M. D., Ayroles, J. F., Morelli, T. Lyn, Rubidge, E. M., Bi, K., and Moritz, C. C., Museum genomics: low-cost and high-accuracy genetic data from historical specimens., Mol Ecol Resour, vol. 11, no. 6, pp. 1082-92, 2011.
S. Luo and Murphy, C. T., Caenorhabditis elegans reproductive aging: Regulation and underlying mechanisms., Genesis, vol. 49, no. 2, pp. 53-65, 2011.
J. H. Millonig, Emerson, J. A., Levorse, J. M., and Tilghman, S. M., Molecular analysis of the distal enhancer of the mouse alpha-fetoprotein gene., Mol Cell Biol, vol. 15, no. 7, pp. 3848-56, 1995.
A. C. Edwards, Ayroles, J. F., Stone, E. A., Carbone, M. Anna, Lyman, R. F., and Mackay, T. F. C., A transcriptional network associated with natural variation in Drosophila aggressive behavior., Genome Biol, vol. 10, no. 7, p. R76, 2009.
J. O. Dubuis, Tkačik, G., Wieschaus, E. F., Gregor, T., and Bialek, W., Positional information, in bits., Proc Natl Acad Sci U S A, vol. 110, no. 41, pp. 16301-8, 2013.
T. Sharpee and Bialek, W., Neural decision boundaries for maximal information transmission., PLoS One, vol. 2, no. 7, p. e646, 2007.
A. Marie Sokac and Wieschaus, E., Zygotically controlled F-actin establishes cortical compartments to stabilize furrows during Drosophila cellularization., J Cell Sci, vol. 121, no. Pt 11, pp. 1815-24, 2008.
D. Hendrix, Levine, M., and Shi, W., miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data., Genome Biol, vol. 11, no. 4, p. R39, 2010.
Y. Deng, Coen, P., Sun, M., and Shaevitz, J. W., Efficient multiple object tracking using mutually repulsive active membranes., PLoS One, vol. 8, no. 6, p. e65769, 2013.
J. M. Rossi, Chen, H., and Tilghman, S. M., Genetic map of the fused locus on mouse chromosome 17., Genomics, vol. 23, no. 1, pp. 178-84, 1994.
K. Pfeifer and Tilghman, S. M., Allele-specific gene expression in mammals: the curious case of the imprinted RNAs., Genes Dev, vol. 8, no. 16, pp. 1867-74, 1994.
M. W. Perry, Boettiger, A. N., Bothma, J. P., and Levine, M., Shadow enhancers foster robustness of Drosophila gastrulation., Curr Biol, vol. 20, no. 17, pp. 1562-7, 2010.
N. Yakoby, Bristow, C. A., Gong, D., Schafer, X., Lembong, J., Zartman, J. J., Halfon, M. S., Schüpbach, T., and Shvartsman, S. Y., A combinatorial code for pattern formation in Drosophila oogenesis., Dev Cell, vol. 15, no. 5, pp. 725-37, 2008.
G. Tkačik, Walczak, A. M., and Bialek, W., Optimizing information flow in small genetic networks., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 80, no. 3 Pt 1, p. 031920, 2009.
J. Mohler and Wieschaus, E. F., Dominant maternal-effect mutations of Drosophila melanogaster causing the production of double-abdomen embryos., Genetics, vol. 112, no. 4, pp. 803-22, 1986.
J. D. Rabinowitz, Lloyd, P. M., Munzar, P., Myers, D. J., Cross, S., Damani, R., Quintana, R., Spyker, D. A., Soni, P., and Cassella, J. V., Ultra-fast absorption of amorphous pure drug aerosols via deep lung inhalation., J Pharm Sci, vol. 95, no. 11, pp. 2438-51, 2006.
A. Stathopoulos and Levine, M., Whole-genome analysis of Drosophila gastrulation., Curr Opin Genet Dev, vol. 14, no. 5, pp. 477-84, 2004.
W. Huang, Richards, S., Carbone, M. Anna, Zhu, D., Anholt, R. R. H., Ayroles, J. F., Duncan, L., Jordan, K. W., Lawrence, F., Magwire, M. M., Warner, C. B., Blankenburg, K., Han, Y., Javaid, M., Jayaseelan, J., Jhangiani, S. N., Muzny, D., Ongeri, F., Perales, L., Wu, Y. - Q., Zhang, Y., Zou, X., Stone, E. A., Gibbs, R. A., and Mackay, T. F. C., Epistasis dominates the genetic architecture of Drosophila quantitative traits., Proc Natl Acad Sci U S A, vol. 109, no. 39, pp. 15553-9, 2012.
T. Schupbach and Wieschaus, E., Probing for gene specificity in epithelial development., Int J Dev Biol, vol. 42, no. 3, pp. 249-55, 1998.
C. A. Rushlow and Shvartsman, S. Y., Temporal dynamics, spatial range, and transcriptional interpretation of the Dorsal morphogen gradient., Curr Opin Genet Dev, vol. 22, no. 6, pp. 542-6, 2012.
D. Papatsenko and Levine, M., Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 14, pp. 4966-71, 2005.
M. A. Gelbart, He, B., Martin, A. C., Thiberge, S. Y., Wieschaus, E. F., and Kaschube, M., Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis., Proc Natl Acad Sci U S A, vol. 109, no. 47, pp. 19298-303, 2012.
J. Grosshans, H Müller, A. J., and Wieschaus, E., Control of cleavage cycles in Drosophila embryos by frühstart., Dev Cell, vol. 5, no. 2, pp. 285-94, 2003.
Y. - C. Wang, Khan, Z., and Wieschaus, E. F., Distinct Rap1 activity states control the extent of epithelial invagination via α-catenin., Dev Cell, vol. 25, no. 3, pp. 299-309, 2013.
R. Papazyan, Sun, Z., Kim, Y. Hoon, Titchenell, P. M., Hill, D. A., Lu, W., Damle, M., Wan, M., Zhang, Y., Briggs, E. R., Rabinowitz, J. D., and Lazar, M. A., Physiological Suppression of Lipotoxic Liver Damage by Complementary Actions of HDAC3 and SCAP/SREBP., Cell Metab, vol. 24, no. 6, pp. 863-874, 2016.
L. - B. Li, Lei, H., Arey, R. N., Li, P., Liu, J., Murphy, C. T., Xu, X. Z. Shawn, and Shen, K., The Neuronal Kinesin UNC-104/KIF1A Is a Key Regulator of Synaptic Aging and Insulin Signaling-Regulated Memory., Curr Biol, vol. 26, no. 5, pp. 605-15, 2016.
Y. Pritykin, Brito, T., Schüpbach, T., Singh, M., and Pane, A., Integrative analysis unveils new functions for the Drosophila Cutoff protein in noncoding RNA biogenesis and gene regulation., RNA, vol. 23, no. 7, pp. 1097-1109, 2017.
D. J. Katz, Beer, M. A., Levorse, J. M., and Tilghman, S. M., Functional characterization of a novel Ku70/80 pause site at the H19/Igf2 imprinting control region., Mol Cell Biol, vol. 25, no. 10, pp. 3855-63, 2005.
R. E. Dawes-Hoang, Zallen, J. A., and Wieschaus, E. F., Bringing classical embryology to C elegans gastrulation., Dev Cell, vol. 4, no. 1, pp. 6-8, 2003.
P. A. Leighton, Ingram, R. S., Eggenschwiler, J., Efstratiadis, A., and Tilghman, S. M., Disruption of imprinting caused by deletion of the H19 gene region in mice., Nature, vol. 375, no. 6526, pp. 34-9, 1995.
R. E. Dawes-Hoang and Wieschaus, E. F., Cell and developmental biology--a shared past, an intertwined future., Dev Cell, vol. 1, no. 1, pp. 27-36, 2001.
W. Lu, Su, X., Klein, M. S., Lewis, I. A., Fiehn, O., and Rabinowitz, J. D., Metabolite Measurement: Pitfalls to Avoid and Practices to Follow., Annu Rev Biochem, vol. 86, pp. 277-304, 2017.
Y. Kim, Coppey, M., Grossman, R., Ajuria, L., Jiménez, G., Paroush, Z. 'ev, and Shvartsman, S. Y., MAPK substrate competition integrates patterning signals in the Drosophila embryo., Curr Biol, vol. 20, no. 5, pp. 446-51, 2010.
J. J. Zartman, Cheung, L. S., Niepielko, M. G., Bonini, C., Haley, B., Yakoby, N., and Shvartsman, S. Y., Pattern formation by a moving morphogen source., Phys Biol, vol. 8, no. 4, p. 045003, 2011.