List of Faculty Publications

Below is a list of Faculty publications imported from PubMed or manually added. By default, publications are sorted by year with titles displayed in ascending alphabetical order.
Shortcuts: Wühr, Martin | Wingreen, Ned | Wieschaus, Eric | Troyanskaya, Olga | Tilghman, Shirley | Storey, John | Singh, Mona | Shvartsman, Stanislav | Shaevitz, Joshua | Rabinowitz, Joshua | Murphy, Coleen | Levine, Michael {Levine, Michael S.} | Gregor, Thomas | Botstein, David | Bialek, William | Ayroles, Julien | Andolfatto, Peter | Akey, Joshua

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History, 20th Century
M. Levine, Retrospective. Walter Gehring (1939-2014)., Science, vol. 345, no. 6194, p. 277, 2014.
History, 21st Century
M. Levine, Retrospective. Walter Gehring (1939-2014)., Science, vol. 345, no. 6194, p. 277, 2014.
Insulin-Like Growth Factor I
R. Kaletsky and Murphy, C. T., The role of insulin/IGF-like signaling in C. elegans longevity and aging., Dis Model Mech, vol. 3, no. 7-8, pp. 415-9, 2010.
Intracellular Signaling Peptides and Proteins
A. Helman, Lim, B., Andreu, M. José, Kim, Y., Shestkin, T., Lu, H., Jiménez, G., Shvartsman, S. Y., and Paroush, Z. 'ev, RTK signaling modulates the Dorsal gradient., Development, vol. 139, no. 16, pp. 3032-9, 2012.
Mitogen-Activated Protein Kinase Kinases
D. L. Nikolić, Boettiger, A. N., Bar-Sagi, D., Carbeck, J. D., and Shvartsman, S. Y., Role of boundary conditions in an experimental model of epithelial wound healing., Am J Physiol Cell Physiol, vol. 291, no. 1, pp. C68-75, 2006.
Models, Biological
T. S. Ursell, Nguyen, J., Monds, R. D., Colavin, A., Billings, G., Ouzounov, N., Gitai, Z., Shaevitz, J. W., and Huang, K. Casey, Rod-like bacterial shape is maintained by feedback between cell curvature and cytoskeletal localization., Proc Natl Acad Sci U S A, vol. 111, no. 11, pp. E1025-34, 2014.
M. L. Skoge, Endres, R. G., and Wingreen, N. S., Receptor-receptor coupling in bacterial chemotaxis: evidence for strongly coupled clusters., Biophys J, vol. 90, no. 12, pp. 4317-26, 2006.
A. Helman, Lim, B., Andreu, M. José, Kim, Y., Shestkin, T., Lu, H., Jiménez, G., Shvartsman, S. Y., and Paroush, Z. 'ev, RTK signaling modulates the Dorsal gradient., Development, vol. 139, no. 16, pp. 3032-9, 2012.
N. S. Tolwinski and Wieschaus, E., Rethinking WNT signaling., Trends Genet, vol. 20, no. 4, pp. 177-81, 2004.
V. Sourjik and Wingreen, N. S., Responding to chemical gradients: bacterial chemotaxis., Curr Opin Cell Biol, vol. 24, no. 2, pp. 262-8, 2012.
L. Vastag, Jorgensen, P., Peshkin, L., Wei, R., Rabinowitz, J. D., and Kirschner, M. W., Remodeling of the metabolome during early frog development., PLoS One, vol. 6, no. 2, p. e16881, 2011.
E. M. Leffler, Bullaughey, K., Matute, D. R., Meyer, W. K., Ségurel, L., Venkat, A., Andolfatto, P., and Przeworski, M., Revisiting an old riddle: what determines genetic diversity levels within species?, PLoS Biol, vol. 10, no. 9, p. e1001388, 2012.
D. L. Nikolić, Boettiger, A. N., Bar-Sagi, D., Carbeck, J. D., and Shvartsman, S. Y., Role of boundary conditions in an experimental model of epithelial wound healing., Am J Physiol Cell Physiol, vol. 291, no. 1, pp. C68-75, 2006.
G. Tkačik, Gregor, T., and Bialek, W., The role of input noise in transcriptional regulation., PLoS One, vol. 3, no. 7, p. e2774, 2008.
E. Wieschaus and Sweeton, D., Requirements for X-linked zygotic gene activity during cellularization of early Drosophila embryos., Development, vol. 104, no. 3, pp. 483-93, 1988.
Models, Statistical
G. Tkačik, Gregor, T., and Bialek, W., The role of input noise in transcriptional regulation., PLoS One, vol. 3, no. 7, p. e2774, 2008.
Mutation
A. Helman, Lim, B., Andreu, M. José, Kim, Y., Shestkin, T., Lu, H., Jiménez, G., Shvartsman, S. Y., and Paroush, Z. 'ev, RTK signaling modulates the Dorsal gradient., Development, vol. 139, no. 16, pp. 3032-9, 2012.
E. Wieschaus and Nöthiger, R., The role of the transformer genes in the development of genitalia and analia of Drosophila melanogaster., Dev Biol, vol. 90, no. 2, pp. 320-34, 1982.
V. S. Chopra, Hong, J. - W., and Levine, M., Regulation of Hox gene activity by transcriptional elongation in Drosophila., Curr Biol, vol. 19, no. 8, pp. 688-93, 2009.
R. M. Morgenstein, Bratton, B. P., Nguyen, J. P., Ouzounov, N., Shaevitz, J. W., and Gitai, Z., RodZ links MreB to cell wall synthesis to mediate MreB rotation and robust morphogenesis., Proc Natl Acad Sci U S A, vol. 112, no. 40, pp. 12510-5, 2015.
A. - L. Hsu, Murphy, C. T., and Kenyon, C., Regulation of aging and age-related disease by DAF-16 and heat-shock factor., Science, vol. 300, no. 5622, pp. 1142-5, 2003.
D. Gresham, Desai, M. M., Tucker, C. M., Jenq, H. T., Pai, D. A., Ward, A., DeSevo, C. G., Botstein, D., and Dunham, M. J., The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast., PLoS Genet, vol. 4, no. 12, p. e1000303, 2008.
S. B. Zusman and Wieschaus, E. F., Requirements for zygotic gene activity during gastrulation in Drosophila melanogaster., Dev Biol, vol. 111, no. 2, pp. 359-71, 1985.
Y. Ahmed, Hayashi, S., Levine, A., and Wieschaus, E., Regulation of armadillo by a Drosophila APC inhibits neuronal apoptosis during retinal development., Cell, vol. 93, no. 7, pp. 1171-82, 1998.
Poisson Distribution
G. Tkačik, Gregor, T., and Bialek, W., The role of input noise in transcriptional regulation., PLoS One, vol. 3, no. 7, p. e2774, 2008.
Regulatory Elements, Transcriptional
G. Tkačik, Gregor, T., and Bialek, W., The role of input noise in transcriptional regulation., PLoS One, vol. 3, no. 7, p. e2774, 2008.
Ribosomes
M. Nofal and Rabinowitz, J. D., Ribosomes on the night shift., Science, vol. 360, no. 6390, pp. 710-711, 2018.
Risk Factors
M. Nofal and Rabinowitz, J. D., Ribosomes on the night shift., Science, vol. 360, no. 6390, pp. 710-711, 2018.
Starvation
M. Nofal and Rabinowitz, J. D., Ribosomes on the night shift., Science, vol. 360, no. 6390, pp. 710-711, 2018.
Switzerland
M. Levine, Retrospective. Walter Gehring (1939-2014)., Science, vol. 345, no. 6194, p. 277, 2014.
Transcription Factors
M. Markstein, Zinzen, R., Markstein, P., Yee, K. - P., Erives, A., Stathopoulos, A., and Levine, M., A regulatory code for neurogenic gene expression in the Drosophila embryo., Development, vol. 131, no. 10, pp. 2387-94, 2004.
A. Helman, Lim, B., Andreu, M. José, Kim, Y., Shestkin, T., Lu, H., Jiménez, G., Shvartsman, S. Y., and Paroush, Z. 'ev, RTK signaling modulates the Dorsal gradient., Development, vol. 139, no. 16, pp. 3032-9, 2012.
V. S. Chopra, Hong, J. - W., and Levine, M., Regulation of Hox gene activity by transcriptional elongation in Drosophila., Curr Biol, vol. 19, no. 8, pp. 688-93, 2009.
A. - L. Hsu, Murphy, C. T., and Kenyon, C., Regulation of aging and age-related disease by DAF-16 and heat-shock factor., Science, vol. 300, no. 5622, pp. 1142-5, 2003.
N. D. Trinklein, Murray, J. I., Hartman, S. J., Botstein, D., and Myers, R. M., The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response., Mol Biol Cell, vol. 15, no. 3, pp. 1254-61, 2004.
S. R McIsaac, Oakes, B. L., Botstein, D., and Noyes, M. B., Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters., J Vis Exp, no. 81, p. e51153, 2013.
M. Peifer, Orsulic, S., Sweeton, D., and Wieschaus, E., A role for the Drosophila segment polarity gene armadillo in cell adhesion and cytoskeletal integrity during oogenesis., Development, vol. 118, no. 4, pp. 1191-207, 1993.
Y. Ahmed, Hayashi, S., Levine, A., and Wieschaus, E., Regulation of armadillo by a Drosophila APC inhibits neuronal apoptosis during retinal development., Cell, vol. 93, no. 7, pp. 1171-82, 1998.
G. Tkačik, Gregor, T., and Bialek, W., The role of input noise in transcriptional regulation., PLoS One, vol. 3, no. 7, p. e2774, 2008.
Transcriptional Elongation Factors
V. S. Chopra, Hong, J. - W., and Levine, M., Regulation of Hox gene activity by transcriptional elongation in Drosophila., Curr Biol, vol. 19, no. 8, pp. 688-93, 2009.
Wnt Proteins
N. S. Tolwinski and Wieschaus, E., Rethinking WNT signaling., Trends Genet, vol. 20, no. 4, pp. 177-81, 2004.

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