List of Faculty Publications

Below is a list of Faculty publications imported from PubMed or manually added. By default, publications are sorted by year with titles displayed in ascending alphabetical order.
Shortcuts: Wühr, Martin | Wingreen, Ned | Wieschaus, Eric | Troyanskaya, Olga | Tilghman, Shirley | Storey, John | Singh, Mona | Shvartsman, Stanislav | Shaevitz, Joshua | Rabinowitz, Joshua | Murphy, Coleen | Levine, Michael {Levine, Michael S.} | Gregor, Thomas | Botstein, David | Bialek, William | Ayroles, Julien | Andolfatto, Peter | Akey, Joshua

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2008
Y. Kyung Kwon, Lu, W., Melamud, E., Khanam, N., Bognar, A., and Rabinowitz, J. D., A domino effect in antifolate drug action in Escherichia coli., Nat Chem Biol, vol. 4, no. 10, pp. 602-8, 2008.
Y. Kyung Kwon, Lu, W., Melamud, E., Khanam, N., Bognar, A., and Rabinowitz, J. D., A domino effect in antifolate drug action in Escherichia coli., Nat Chem Biol, vol. 4, no. 10, pp. 602-8, 2008.
D. Papatsenko and Levine, M. S., Dual regulation by the Hunchback gradient in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 105, no. 8, pp. 2901-6, 2008.
J. - W. Hong, Hendrix, D. A., Papatsenko, D., and Levine, M. S., How the Dorsal gradient works: insights from postgenome technologies., Proc Natl Acad Sci U S A, vol. 105, no. 51, pp. 20072-6, 2008.
C. L. Vizcarra, Zhang, N., Marshall, S. A., Wingreen, N. S., Zeng, C., and Mayo, S. L., An improved pairwise decomposable finite-difference Poisson-Boltzmann method for computational protein design., J Comput Chem, vol. 29, no. 7, pp. 1153-62, 2008.
G. Tkačik, Callan, C. G., and Bialek, W., Information capacity of genetic regulatory elements., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 78, no. 1 Pt 1, p. 011910, 2008.
G. Tkačik, Callan, C. G., and Bialek, W., Information capacity of genetic regulatory elements., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 78, no. 1 Pt 1, p. 011910, 2008.
G. Tkačik, Callan, C. G., and Bialek, W., Information flow and optimization in transcriptional regulation., Proc Natl Acad Sci U S A, vol. 105, no. 34, pp. 12265-70, 2008.
G. Tkačik, Callan, C. G., and Bialek, W., Information flow and optimization in transcriptional regulation., Proc Natl Acad Sci U S A, vol. 105, no. 34, pp. 12265-70, 2008.
J. Yuan, Bennett, B. D., and Rabinowitz, J. D., Kinetic flux profiling for quantitation of cellular metabolic fluxes., Nat Protoc, vol. 3, no. 8, pp. 1328-40, 2008.
D. A. Hendrix, Hong, J. - W., Zeitlinger, J., Rokhsar, D. S., and Levine, M. S., Promoter elements associated with RNA Pol II stalling in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 105, no. 22, pp. 7762-7, 2008.
D. A. Hendrix, Hong, J. - W., Zeitlinger, J., Rokhsar, D. S., and Levine, M. S., Promoter elements associated with RNA Pol II stalling in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 105, no. 22, pp. 7762-7, 2008.
P. Mehta, Goyal, S., and Wingreen, N. S., A quantitative comparison of sRNA-based and protein-based gene regulation., Mol Syst Biol, vol. 4, p. 221, 2008.
C. M. Waters, Lu, W., Rabinowitz, J. D., and Bassler, B. L., Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT., J Bacteriol, vol. 190, no. 7, pp. 2527-36, 2008.
G. Tkačik, Gregor, T., and Bialek, W., The role of input noise in transcriptional regulation., PLoS One, vol. 3, no. 7, p. e2774, 2008.
G. Tkačik, Gregor, T., and Bialek, W., The role of input noise in transcriptional regulation., PLoS One, vol. 3, no. 7, p. e2774, 2008.
H. Wang, Wingreen, N. S., and Mukhopadhyay, R., Self-organized periodicity of protein clusters in growing bacteria., Phys Rev Lett, vol. 101, no. 21, p. 218101, 2008.
J. - W. Hong, Hendrix, D. A., and Levine, M. S., Shadow enhancers as a source of evolutionary novelty., Science, vol. 321, no. 5894, p. 1314, 2008.
T. Gregor, McGregor, A. P., and Wieschaus, E. F., Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos., Dev Biol, vol. 316, no. 2, pp. 350-8, 2008.
B. Haley, Hendrix, D., Trang, V., and Levine, M., A simplified miRNA-based gene silencing method for Drosophila melanogaster., Dev Biol, vol. 321, no. 2, pp. 482-90, 2008.
M. J. Rosenbluth, Crow, A., Shaevitz, J. W., and Fletcher, D. A., Slow stress propagation in adherent cells., Biophys J, vol. 95, no. 12, pp. 6052-9, 2008.
J. Lembong, Yakoby, N., and Shvartsman, S. Y., Spatial regulation of BMP signaling by patterned receptor expression., Tissue Eng Part A, vol. 14, no. 9, pp. 1469-77, 2008.
L. Christiaen, Davidson, B., Kawashima, T., Powell, W., Nolla, H., Vranizan, K., and Levine, M., The transcription/migration interface in heart precursors of Ciona intestinalis., Science, vol. 320, no. 5881, pp. 1349-52, 2008.
A. J. Pompeani, Irgon, J. J., Berger, M. F., Bulyk, M. L., Wingreen, N. S., and Bassler, B. L., The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters., Mol Microbiol, vol. 70, no. 1, pp. 76-88, 2008.
2007
A. Chi, Huttenhower, C., Geer, L. Y., Coon, J. J., Syka, J. E. P., Bai, D. L., Shabanowitz, J., Burke, D. J., Troyanskaya, O. G., and Hunt, D. F., Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry., Proc Natl Acad Sci U S A, vol. 104, no. 7, pp. 2193-8, 2007.
W. M. Shaw, Luo, S., Landis, J., Ashraf, J., and Murphy, C. T., The C. elegans TGF-beta Dauer pathway regulates longevity via insulin signaling., Curr Biol, vol. 17, no. 19, pp. 1635-45, 2007.
J. M. Goodliffe, Cole, M. D., and Wieschaus, E., Coordinated regulation of Myc trans-activation targets by Polycomb and the Trithorax group protein Ash1., BMC Mol Biol, vol. 8, p. 40, 2007.
J. M. Goodliffe, Cole, M. D., and Wieschaus, E., Coordinated regulation of Myc trans-activation targets by Polycomb and the Trithorax group protein Ash1., BMC Mol Biol, vol. 8, p. 40, 2007.
J. Yuan and Rabinowitz, J. D., Differentiating metabolites formed from de novo synthesis versus macromolecule decomposition., J Am Chem Soc, vol. 129, no. 30, pp. 9294-5, 2007.
A. S. Putnam, J Scriber, M., and Andolfatto, P., Discordant divergence times among Z-chromosome regions between two ecologically distinct swallowtail butterfly species., Evolution, vol. 61, no. 4, pp. 912-27, 2007.
J. J. Zartman and Shvartsman, S. Y., Enhancer organization: transistor with a twist or something in a different vein?, Curr Biol, vol. 17, no. 24, pp. R1048-50, 2007.
J. J. Zartman and Shvartsman, S. Y., Enhancer organization: transistor with a twist or something in a different vein?, Curr Biol, vol. 17, no. 24, pp. R1048-50, 2007.
D. Straile, Eckmann, R., Jüngling, T., Thomas, G., and Löffler, H., Influence of climate variability on whitefish (Coregonus lavaretus) year-class strength in a deep, warm monomictic lake., Oecologia, vol. 151, no. 3, pp. 521-9, 2007.
W. Lu, Kwon, Y. Kyung, and Rabinowitz, J. D., Isotope ratio-based profiling of microbial folates., J Am Soc Mass Spectrom, vol. 18, no. 5, pp. 898-909, 2007.
M. Coppey, Berezhkovskii, A. M., Kim, Y., Boettiger, A. N., and Shvartsman, S. Y., Modeling the bicoid gradient: diffusion and reversible nuclear trapping of a stable protein., Dev Biol, vol. 312, no. 2, pp. 623-30, 2007.
S. Heinicke, Livstone, M. S., Lu, C., Oughtred, R., Kang, F., Angiuoli, S. V., White, O., Botstein, D., and Dolinski, K., The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists., PLoS One, vol. 2, no. 8, p. e766, 2007.
T. Gregor, Tank, D. W., Wieschaus, E. F., and Bialek, W., Probing the limits to positional information., Cell, vol. 130, no. 1, pp. 153-64, 2007.
T. Gregor, Tank, D. W., Wieschaus, E. F., and Bialek, W., Probing the limits to positional information., Cell, vol. 130, no. 1, pp. 153-64, 2007.
T. Gregor, Wieschaus, E. F., McGregor, A. P., Bialek, W., and Tank, D. W., Stability and nuclear dynamics of the bicoid morphogen gradient., Cell, vol. 130, no. 1, pp. 141-52, 2007.
C. T. Murphy, Lee, S. - J., and Kenyon, C., Tissue entrainment by feedback regulation of insulin gene expression in the endoderm of Caenorhabditis elegans., Proc Natl Acad Sci U S A, vol. 104, no. 48, pp. 19046-50, 2007.
V. Sourjik and Wingreen, N. S., Turning to the cold., Nat Cell Biol, vol. 9, no. 9, pp. 1029-31, 2007.
S. De Renzis, Elemento, O., Tavazoie, S., and Wieschaus, E. F., Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo., PLoS Biol, vol. 5, no. 5, p. e117, 2007.
2006
N. Wingreen and Botstein, D., Back to the future: education for systems-level biologists., Nat Rev Mol Cell Biol, vol. 7, no. 11, pp. 829-32, 2006.
J. E. Keymer, Endres, R. G., Skoge, M., Meir, Y., and Wingreen, N. S., Chemosensing in Escherichia coli: two regimes of two-state receptors., Proc Natl Acad Sci U S A, vol. 103, no. 6, pp. 1786-91, 2006.
S. De Renzis, Yu, J., Zinzen, R., and Wieschaus, E., Dorsal-ventral pattern of Delta trafficking is established by a Snail-Tom-Neuralized pathway., Dev Cell, vol. 10, no. 2, pp. 257-64, 2006.
J. Munger, Bajad, S. U., Coller, H. A., Shenk, T., and Rabinowitz, J. D., Dynamics of the cellular metabolome during human cytomegalovirus infection., PLoS Pathog, vol. 2, no. 12, p. e132, 2006.
D. Mancini-Dinardo, Steele, S. J. S., Levorse, J. M., Ingram, R. S., and Tilghman, S. M., Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes., Genes Dev, vol. 20, no. 10, pp. 1268-82, 2006.
D. Mancini-Dinardo, Steele, S. J. S., Levorse, J. M., Ingram, R. S., and Tilghman, S. M., Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes., Genes Dev, vol. 20, no. 10, pp. 1268-82, 2006.
C. Kenyon and Murphy, C. T., Enrichment of regulatory motifs upstream of predicted DAF-16 targets., Nat Genet, vol. 38, no. 4, pp. 397-8; author reply 398, 2006.
T. Sørlie, Perou, C. M., Fan, C., Geisler, S., Aas, T., Nobel, A., Anker, G., Akslen, L. A., Botstein, D., Børresen-Dale, A. - L., and Lønning, P. Eystein, Gene expression profiles do not consistently predict the clinical treatment response in locally advanced breast cancer., Mol Cancer Ther, vol. 5, no. 11, pp. 2914-8, 2006.
T. Sørlie, Perou, C. M., Fan, C., Geisler, S., Aas, T., Nobel, A., Anker, G., Akslen, L. A., Botstein, D., Børresen-Dale, A. - L., and Lønning, P. Eystein, Gene expression profiles do not consistently predict the clinical treatment response in locally advanced breast cancer., Mol Cancer Ther, vol. 5, no. 11, pp. 2914-8, 2006.
M. Diehn, Bhattacharya, R., Botstein, D., and Brown, P. O., Genome-scale identification of membrane-associated human mRNAs., PLoS Genet, vol. 2, no. 1, p. e11, 2006.
M. Diehn, Bhattacharya, R., Botstein, D., and Brown, P. O., Genome-scale identification of membrane-associated human mRNAs., PLoS Genet, vol. 2, no. 1, p. e11, 2006.
J. Yuan, Fowler, W. U., Kimball, E., Lu, W., and Rabinowitz, J. D., Kinetic flux profiling of nitrogen assimilation in Escherichia coli., Nat Chem Biol, vol. 2, no. 10, pp. 529-30, 2006.
R. G. Endres and Wingreen, N. S., Precise adaptation in bacterial chemotaxis through "assistance neighborhoods"., Proc Natl Acad Sci U S A, vol. 103, no. 35, pp. 13040-4, 2006.
L. A. Goentoro, Reeves, G. T., Kowal, C. P., Martinelli, L., Schüpbach, T., and Shvartsman, S. Y., Quantifying the Gurken morphogen gradient in Drosophila oogenesis., Dev Cell, vol. 11, no. 2, pp. 263-72, 2006.
L. A. Goentoro, Yakoby, N., Goodhouse, J., Schüpbach, T., and Shvartsman, S. Y., Quantitative analysis of the GAL4/UAS system in Drosophila oogenesis., Genesis, vol. 44, no. 2, pp. 66-74, 2006.
C. T. Murphy, The search for DAF-16/FOXO transcriptional targets: approaches and discoveries., Exp Gerontol, vol. 41, no. 10, pp. 910-21, 2006.
C. T. Murphy, The search for DAF-16/FOXO transcriptional targets: approaches and discoveries., Exp Gerontol, vol. 41, no. 10, pp. 910-21, 2006.
M. Ronen and Botstein, D., Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source., Proc Natl Acad Sci U S A, vol. 103, no. 2, pp. 389-94, 2006.
M. Ronen and Botstein, D., Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source., Proc Natl Acad Sci U S A, vol. 103, no. 2, pp. 389-94, 2006.
M. Ronen and Botstein, D., Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source., Proc Natl Acad Sci U S A, vol. 103, no. 2, pp. 389-94, 2006.
2005
E. A. Abbondanzieri, Greenleaf, W. J., Shaevitz, J. W., Landick, R., and Block, S. M., Direct observation of base-pair stepping by RNA polymerase., Nature, vol. 438, no. 7067, pp. 460-5, 2005.
E. A. Abbondanzieri, Greenleaf, W. J., Shaevitz, J. W., Landick, R., and Block, S. M., Direct observation of base-pair stepping by RNA polymerase., Nature, vol. 438, no. 7067, pp. 460-5, 2005.
R. Shyamsundar, Kim, Y. H., Higgins, J. P., Montgomery, K., Jorden, M., Sethuraman, A., van de Rijn, M., Botstein, D., Brown, P. O., and Pollack, J. R., A DNA microarray survey of gene expression in normal human tissues., Genome Biol, vol. 6, no. 3, p. R22, 2005.
R. E. Dawes-Hoang, Parmar, K. M., Christiansen, A. E., Phelps, C. B., Brand, A. H., and Wieschaus, E. F., folded gastrulation, cell shape change and the control of myosin localization., Development, vol. 132, no. 18, pp. 4165-78, 2005.
Y. Liang, Diehn, M., Watson, N., Bollen, A. W., Aldape, K. D., M Nicholas, K., Lamborn, K. R., Berger, M. S., Botstein, D., Brown, P. O., and Israel, M. A., Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme., Proc Natl Acad Sci U S A, vol. 102, no. 16, pp. 5814-9, 2005.
W. Wang, J Cherry, M., Nochomovitz, Y., Jolly, E., Botstein, D., and Li, H., Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation., Proc Natl Acad Sci U S A, vol. 102, no. 6, pp. 1998-2003, 2005.
W. Wang, J Cherry, M., Nochomovitz, Y., Jolly, E., Botstein, D., and Li, H., Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation., Proc Natl Acad Sci U S A, vol. 102, no. 6, pp. 1998-2003, 2005.
M. I. Monine, Berezhkovskii, A. M., Joslin, E. J., H Wiley, S., Lauffenburger, D. A., and Shvartsman, S. Y., Ligand accumulation in autocrine cell cultures., Biophys J, vol. 88, no. 4, pp. 2384-90, 2005.
E. A. Abbondanzieri, Shaevitz, J. W., and Block, S. M., Picocalorimetry of transcription by RNA polymerase., Biophys J, vol. 89, no. 6, pp. L61-3, 2005.
E. A. Abbondanzieri, Shaevitz, J. W., and Block, S. M., Picocalorimetry of transcription by RNA polymerase., Biophys J, vol. 89, no. 6, pp. L61-3, 2005.
J. M. Goodliffe, Wieschaus, E., and Cole, M. D., Polycomb mediates Myc autorepression and its transcriptional control of many loci in Drosophila., Genes Dev, vol. 19, no. 24, pp. 2941-6, 2005.
B. Houchmandzadeh, Wieschaus, E., and Leibler, S., Precise domain specification in the developing Drosophila embryo., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 72, no. 6 Pt 1, p. 061920, 2005.
B. Houchmandzadeh, Wieschaus, E., and Leibler, S., Precise domain specification in the developing Drosophila embryo., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 72, no. 6 Pt 1, p. 061920, 2005.
D. Papatsenko and Levine, M., Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 14, pp. 4966-71, 2005.
D. Papatsenko and Levine, M., Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 14, pp. 4966-71, 2005.
L. C. Osborne, Lisberger, S. G., and Bialek, W., A sensory source for motor variation., Nature, vol. 437, no. 7057, pp. 412-6, 2005.
F. Biemar, Zinzen, R., Ronshaugen, M., Sementchenko, V., J Manak, R., and Levine, M. S., Spatial regulation of microRNA gene expression in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 44, pp. 15907-11, 2005.
F. Biemar, Zinzen, R., Ronshaugen, M., Sementchenko, V., J Manak, R., and Levine, M. S., Spatial regulation of microRNA gene expression in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 44, pp. 15907-11, 2005.
F. Biemar, Zinzen, R., Ronshaugen, M., Sementchenko, V., J Manak, R., and Levine, M. S., Spatial regulation of microRNA gene expression in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 44, pp. 15907-11, 2005.
F. Biemar, Zinzen, R., Ronshaugen, M., Sementchenko, V., J Manak, R., and Levine, M. S., Spatial regulation of microRNA gene expression in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 102, no. 44, pp. 15907-11, 2005.
J. W. Shaevitz, Lee, J. Y., and Fletcher, D. A., Spiroplasma swim by a processive change in body helicity., Cell, vol. 122, no. 6, pp. 941-5, 2005.
G. Wallace, Anshus, O. J., Bi, P., Chen, H., Chen, Y., Clark, D., Cook, P., Finkelstein, A., Funkhouser, T., Gupta, A., Hibbs, M., Li, K., Liu, Z., Samanta, R., Sukthankar, R., and Troyanskaya, O., Tools and applications for large-scale display walls., IEEE Comput Graph Appl, vol. 25, no. 4, pp. 24-33, 2005.
B. Davidson, Shi, W., and Levine, M., Uncoupling heart cell specification and migration in the simple chordate Ciona intestinalis., Development, vol. 132, no. 21, pp. 4811-8, 2005.
2004
R. Osada, Zaslavsky, E., and Singh, M., Comparative analysis of methods for representing and searching for transcription factor binding sites., Bioinformatics, vol. 20, no. 18, pp. 3516-25, 2004.
S. A. McCarroll, Murphy, C. T., Zou, S., Pletcher, S. D., Chin, C. - S., Jan, Y. Nung, Kenyon, C., Bargmann, C. I., and Li, H., Comparing genomic expression patterns across species identifies shared transcriptional profile in aging., Nat Genet, vol. 36, no. 2, pp. 197-204, 2004.
A. Erives and Levine, M., Coordinate enhancers share common organizational features in the Drosophila genome., Proc Natl Acad Sci U S A, vol. 101, no. 11, pp. 3851-6, 2004.
K. Jim, Parmar, K., Singh, M., and Tavazoie, S., A cross-genomic approach for systematic mapping of phenotypic traits to genes., Genome Res, vol. 14, no. 1, pp. 109-15, 2004.
M. Shapira, Segal, E., and Botstein, D., Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress., Mol Biol Cell, vol. 15, no. 12, pp. 5659-69, 2004.
M. Shapira, Segal, E., and Botstein, D., Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress., Mol Biol Cell, vol. 15, no. 12, pp. 5659-69, 2004.
J. Isaac Murray, Whitfield, M. L., Trinklein, N. D., Myers, R. M., Brown, P. O., and Botstein, D., Diverse and specific gene expression responses to stresses in cultured human cells., Mol Biol Cell, vol. 15, no. 5, pp. 2361-74, 2004.
H. Zhao, Whitfield, M. L., Xu, T., Botstein, D., and Brooks, J. D., Diverse effects of methylseleninic acid on the transcriptional program of human prostate cancer cells., Mol Biol Cell, vol. 15, no. 2, pp. 506-19, 2004.
N. Zhang, Zeng, C., and Wingreen, N. S., Fast accurate evaluation of protein solvent exposure., Proteins, vol. 57, no. 3, pp. 565-76, 2004.
N. Zhang, Zeng, C., and Wingreen, N. S., Fast accurate evaluation of protein solvent exposure., Proteins, vol. 57, no. 3, pp. 565-76, 2004.
J. Lapointe, Li, C., Higgins, J. P., van de Rijn, M., Bair, E., Montgomery, K., Ferrari, M., Egevad, L., Rayford, W., Bergerheim, U., Ekman, P., DeMarzo, A. M., Tibshirani, R., Botstein, D., Brown, P. O., Brooks, J. D., and Pollack, J. R., Gene expression profiling identifies clinically relevant subtypes of prostate cancer., Proc Natl Acad Sci U S A, vol. 101, no. 3, pp. 811-6, 2004.
K. Senger, Armstrong, G. W., Rowell, W. J., Kwan, J. M., Markstein, M., and Levine, M., Immunity regulatory DNAs share common organizational features in Drosophila., Mol Cell, vol. 13, no. 1, pp. 19-32, 2004.
K. Senger, Armstrong, G. W., Rowell, W. J., Kwan, J. M., Markstein, M., and Levine, M., Immunity regulatory DNAs share common organizational features in Drosophila., Mol Cell, vol. 13, no. 1, pp. 19-32, 2004.
N. S. Tolwinski and Wieschaus, E., A nuclear escort for beta-catenin., Nat Cell Biol, vol. 6, no. 7, pp. 579-80, 2004.
N. S. Tolwinski and Wieschaus, E., A nuclear escort for beta-catenin., Nat Cell Biol, vol. 6, no. 7, pp. 579-80, 2004.
N. S. Tolwinski and Wieschaus, E., A nuclear function for armadillo/beta-catenin., PLoS Biol, vol. 2, no. 4, p. E95, 2004.
N. S. Tolwinski and Wieschaus, E., A nuclear function for armadillo/beta-catenin., PLoS Biol, vol. 2, no. 4, p. E95, 2004.
J. A. Zallen and Wieschaus, E., Patterned gene expression directs bipolar planar polarity in Drosophila., Dev Cell, vol. 6, no. 3, pp. 343-55, 2004.
J. A. Zallen and Wieschaus, E., Patterned gene expression directs bipolar planar polarity in Drosophila., Dev Cell, vol. 6, no. 3, pp. 343-55, 2004.
J. H. Fong, Keating, A. E., and Singh, M., Predicting specificity in bZIP coiled-coil protein interactions., Genome Biol, vol. 5, no. 2, p. R11, 2004.
M. Markstein, Zinzen, R., Markstein, P., Yee, K. - P., Erives, A., Stathopoulos, A., and Levine, M., A regulatory code for neurogenic gene expression in the Drosophila embryo., Development, vol. 131, no. 10, pp. 2387-94, 2004.
N. D. Trinklein, Murray, J. I., Hartman, S. J., Botstein, D., and Myers, R. M., The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response., Mol Biol Cell, vol. 15, no. 3, pp. 1254-61, 2004.
N. D. Trinklein, Murray, J. I., Hartman, S. J., Botstein, D., and Myers, R. M., The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response., Mol Biol Cell, vol. 15, no. 3, pp. 1254-61, 2004.
L. C. Osborne, Bialek, W., and Lisberger, S. G., Time course of information about motion direction in visual area MT of macaque monkeys., J Neurosci, vol. 24, no. 13, pp. 3210-22, 2004.
R. G. Endres, Schulthess, T. C., and Wingreen, N. S., Toward an atomistic model for predicting transcription-factor binding sites., Proteins, vol. 57, no. 2, pp. 262-8, 2004.
M. Shakoury-Elizeh, Tiedeman, J., Rashford, J., Ferea, T., Demeter, J., Garcia, E., Rolfes, R., Brown, P. O., Botstein, D., and Philpott, C. C., Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae., Mol Biol Cell, vol. 15, no. 3, pp. 1233-43, 2004.
2003
J. W. Shaevitz, Abbondanzieri, E. A., Landick, R., and Block, S. M., Backtracking by single RNA polymerase molecules observed at near-base-pair resolution., Nature, vol. 426, no. 6967, pp. 684-7, 2003.
J. W. Shaevitz, Abbondanzieri, E. A., Landick, R., and Block, S. M., Backtracking by single RNA polymerase molecules observed at near-base-pair resolution., Nature, vol. 426, no. 6967, pp. 684-7, 2003.
J. W. Shaevitz, Abbondanzieri, E. A., Landick, R., and Block, S. M., Backtracking by single RNA polymerase molecules observed at near-base-pair resolution., Nature, vol. 426, no. 6967, pp. 684-7, 2003.
J. W. Shaevitz, Abbondanzieri, E. A., Landick, R., and Block, S. M., Backtracking by single RNA polymerase molecules observed at near-base-pair resolution., Nature, vol. 426, no. 6967, pp. 684-7, 2003.
O. G. Troyanskaya, Dolinski, K., Owen, A. B., Altman, R. B., and Botstein, D., A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)., Proc Natl Acad Sci U S A, vol. 100, no. 14, pp. 8348-53, 2003.
K. S. Smith, Chanda, S. K., Lingbeek, M., Ross, D. T., Botstein, D., van Lohuizen, M., and Cleary, M. L., Bmi-1 regulation of INK4A-ARF is a downstream requirement for transformation of hematopoietic progenitors by E2a-Pbx1., Mol Cell, vol. 12, no. 2, pp. 393-400, 2003.
K. S. Smith, Chanda, S. K., Lingbeek, M., Ross, D. T., Botstein, D., van Lohuizen, M., and Cleary, M. L., Bmi-1 regulation of INK4A-ARF is a downstream requirement for transformation of hematopoietic progenitors by E2a-Pbx1., Mol Cell, vol. 12, no. 2, pp. 393-400, 2003.
Y. Nibu, Senger, K., and Levine, M., CtBP-independent repression in the Drosophila embryo., Mol Cell Biol, vol. 23, no. 11, pp. 3990-9, 2003.
D. Mancini-Dinardo, Steele, S. J. S., Ingram, R. S., and Tilghman, S. M., A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer., Hum Mol Genet, vol. 12, no. 3, pp. 283-94, 2003.
J. - T. Chi, Chang, H. Y., Haraldsen, G., Jahnsen, F. L., Troyanskaya, O. G., Chang, D. S., Wang, Z., Rockson, S. G., van de Rijn, M., Botstein, D., and Brown, P. O., Endothelial cell diversity revealed by global expression profiling., Proc Natl Acad Sci U S A, vol. 100, no. 19, pp. 10623-8, 2003.
E. Semenova, Wang, X. F., Jablonski, M. M., Levorse, J., and Tilghman, S. M., An engineered 800 kilobase deletion of Uchl3 and Lmo7 on mouse chromosome 14 causes defects in viability, postnatal growth and degeneration of muscle and retina., Hum Mol Genet, vol. 12, no. 11, pp. 1301-12, 2003.
A. B. Bowman, Levorse, J. M., Ingram, R. S., and Tilghman, S. M., Functional characterization of a testis-specific DNA binding activity at the H19/Igf2 imprinting control region., Mol Cell Biol, vol. 23, no. 22, pp. 8345-51, 2003.
S. C. Linn, West, R. B., Pollack, J. R., Zhu, S., Hernandez-Boussard, T., Nielsen, T. O., Rubin, B. P., Patel, iv, R., Goldblum, J. R., Siegmund, D., Botstein, D., Brown, P. O., C Gilks, B., and van de Rijn, M., Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans., Am J Pathol, vol. 163, no. 6, pp. 2383-95, 2003.
M. E. Schaner, Ross, D. T., Ciaravino, G., Sorlie, T., Troyanskaya, O., Diehn, M., Wang, Y. C., Duran, G. E., Sikic, T. L., Caldeira, S., Skomedal, H., Tu, I. - P., Hernandez-Boussard, T., Johnson, S. W., O'Dwyer, P. J., Fero, M. J., Kristensen, G. B., Borresen-Dale, A. - L., Hastie, T., Tibshirani, R., van de Rijn, M., Teng, N. N., Longacre, T. A., Botstein, D., Brown, P. O., and Sikic, B. I., Gene expression patterns in ovarian carcinomas., Mol Biol Cell, vol. 14, no. 11, pp. 4376-86, 2003.
M. E. Schaner, Ross, D. T., Ciaravino, G., Sorlie, T., Troyanskaya, O., Diehn, M., Wang, Y. C., Duran, G. E., Sikic, T. L., Caldeira, S., Skomedal, H., Tu, I. - P., Hernandez-Boussard, T., Johnson, S. W., O'Dwyer, P. J., Fero, M. J., Kristensen, G. B., Borresen-Dale, A. - L., Hastie, T., Tibshirani, R., van de Rijn, M., Teng, N. N., Longacre, T. A., Botstein, D., Brown, P. O., and Sikic, B. I., Gene expression patterns in ovarian carcinomas., Mol Biol Cell, vol. 14, no. 11, pp. 4376-86, 2003.
M. E. Schaner, Ross, D. T., Ciaravino, G., Sorlie, T., Troyanskaya, O., Diehn, M., Wang, Y. C., Duran, G. E., Sikic, T. L., Caldeira, S., Skomedal, H., Tu, I. - P., Hernandez-Boussard, T., Johnson, S. W., O'Dwyer, P. J., Fero, M. J., Kristensen, G. B., Borresen-Dale, A. - L., Hastie, T., Tibshirani, R., van de Rijn, M., Teng, N. N., Longacre, T. A., Botstein, D., Brown, P. O., and Sikic, B. I., Gene expression patterns in ovarian carcinomas., Mol Biol Cell, vol. 14, no. 11, pp. 4376-86, 2003.
C. T. Murphy, McCarroll, S. A., Bargmann, C. I., Fraser, A., Kamath, R. S., Ahringer, J., Li, H., and Kenyon, C., Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans., Nature, vol. 424, no. 6946, pp. 277-83, 2003.
C. T. Murphy, McCarroll, S. A., Bargmann, C. I., Fraser, A., Kamath, R. S., Ahringer, J., Li, H., and Kenyon, C., Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans., Nature, vol. 424, no. 6946, pp. 277-83, 2003.
C. T. Murphy, McCarroll, S. A., Bargmann, C. I., Fraser, A., Kamath, R. S., Ahringer, J., Li, H., and Kenyon, C., Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans., Nature, vol. 424, no. 6946, pp. 277-83, 2003.
V. C. Calhoun and Levine, M., Long-range enhancer-promoter interactions in the Scr-Antp interval of the Drosophila Antennapedia complex., Proc Natl Acad Sci U S A, vol. 100, no. 17, pp. 9878-83, 2003.
A. - L. Hsu, Murphy, C. T., and Kenyon, C., Regulation of aging and age-related disease by DAF-16 and heat-shock factor., Science, vol. 300, no. 5622, pp. 1142-5, 2003.
L. Batsilas, Berezhkovskii, A. M., and Shvartsman, S. Y., Stochastic model of autocrine and paracrine signals in cell culture assays., Biophys J, vol. 85, no. 6, pp. 3659-65, 2003.
J. P. Roose, Diehn, M., Tomlinson, M. G., Lin, J., Alizadeh, A. A., Botstein, D., Brown, P. O., and Weiss, A., T cell receptor-independent basal signaling via Erk and Abl kinases suppresses RAG gene expression., PLoS Biol, vol. 1, no. 2, p. E53, 2003.
J. P. Roose, Diehn, M., Tomlinson, M. G., Lin, J., Alizadeh, A. A., Botstein, D., Brown, P. O., and Weiss, A., T cell receptor-independent basal signaling via Erk and Abl kinases suppresses RAG gene expression., PLoS Biol, vol. 1, no. 2, p. E53, 2003.
J. P. Roose, Diehn, M., Tomlinson, M. G., Lin, J., Alizadeh, A. A., Botstein, D., Brown, P. O., and Weiss, A., T cell receptor-independent basal signaling via Erk and Abl kinases suppresses RAG gene expression., PLoS Biol, vol. 1, no. 2, p. E53, 2003.
T. O. Nielsen, Hsu, F. D., O'Connell, J. X., C Gilks, B., Sorensen, P. H. B., Linn, S., West, R. B., Liu, C. Long, Botstein, D., Brown, P. O., and van de Rijn, M., Tissue microarray validation of epidermal growth factor receptor and SALL2 in synovial sarcoma with comparison to tumors of similar histology., Am J Pathol, vol. 163, no. 4, pp. 1449-56, 2003.
M. Levine and Tjian, R., Transcription regulation and animal diversity., Nature, vol. 424, no. 6945, pp. 147-51, 2003.
M. Levine and Tjian, R., Transcription regulation and animal diversity., Nature, vol. 424, no. 6945, pp. 147-51, 2003.
M. Pribyl, Muratov, C. B., and Shvartsman, S. Y., Transitions in the model of epithelial patterning., Dev Dyn, vol. 226, no. 1, pp. 155-9, 2003.
S. P. Bohen, Troyanskaya, O. G., Alter, O., Warnke, R., Botstein, D., Brown, P. O., and Levy, R., Variation in gene expression patterns in follicular lymphoma and the response to rituximab., Proc Natl Acad Sci U S A, vol. 100, no. 4, pp. 1926-30, 2003.
J. Cowden and Levine, M., Ventral dominance governs sequential patterns of gene expression across the dorsal-ventral axis of the neuroectoderm in the Drosophila embryo., Dev Biol, vol. 262, no. 2, pp. 335-49, 2003.
N. S. Tolwinski, Wehrli, M., Rives, A., Erdeniz, N., DiNardo, S., and Wieschaus, E., Wg/Wnt signal can be transmitted through arrow/LRP5,6 and Axin independently of Zw3/Gsk3beta activity., Dev Cell, vol. 4, no. 3, pp. 407-18, 2003.
N. S. Tolwinski, Wehrli, M., Rives, A., Erdeniz, N., DiNardo, S., and Wieschaus, E., Wg/Wnt signal can be transmitted through arrow/LRP5,6 and Axin independently of Zw3/Gsk3beta activity., Dev Cell, vol. 4, no. 3, pp. 407-18, 2003.
2002
E. Bae, Calhoun, V. C., Levine, M., Lewis, E. B., and Drewell, R. A., Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex., Proc Natl Acad Sci U S A, vol. 99, no. 26, pp. 16847-52, 2002.
E. Bae, Calhoun, V. C., Levine, M., Lewis, E. B., and Drewell, R. A., Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex., Proc Natl Acad Sci U S A, vol. 99, no. 26, pp. 16847-52, 2002.
S. E. Cole, Levorse, J. M., Tilghman, S. M., and Vogt, T. F., Clock regulatory elements control cyclic expression of Lunatic fringe during somitogenesis., Dev Cell, vol. 3, no. 1, pp. 75-84, 2002.
S. E. Cole, Levorse, J. M., Tilghman, S. M., and Vogt, T. F., Clock regulatory elements control cyclic expression of Lunatic fringe during somitogenesis., Dev Cell, vol. 3, no. 1, pp. 75-84, 2002.
C. Hunter, Sung, P., Schejter, E. D., and Wieschaus, E., Conserved domains of the Nullo protein required for cell-surface localization and formation of adherens junctions., Mol Biol Cell, vol. 13, no. 1, pp. 146-57, 2002.
M. Markstein and Levine, M., Decoding cis-regulatory DNAs in the Drosophila genome., Curr Opin Genet Dev, vol. 12, no. 5, pp. 601-6, 2002.
M. Markstein and Levine, M., Decoding cis-regulatory DNAs in the Drosophila genome., Curr Opin Genet Dev, vol. 12, no. 5, pp. 601-6, 2002.
H. Li, Tang, C., and Wingreen, N. S., Designability of protein structures: a lattice-model study using the Miyazawa-Jernigan matrix., Proteins, vol. 49, no. 3, pp. 403-12, 2002.
A. Stathopoulos and Levine, M., Dorsal gradient networks in the Drosophila embryo., Dev Biol, vol. 246, no. 1, pp. 57-67, 2002.
Y. Ahmed, Nouri, A., and Wieschaus, E., Drosophila Apc1 and Apc2 regulate Wingless transduction throughout development., Development, vol. 129, no. 7, pp. 1751-62, 2002.
Y. Ahmed, Nouri, A., and Wieschaus, E., Drosophila Apc1 and Apc2 regulate Wingless transduction throughout development., Development, vol. 129, no. 7, pp. 1751-62, 2002.
Y. Ahmed, Nouri, A., and Wieschaus, E., Drosophila Apc1 and Apc2 regulate Wingless transduction throughout development., Development, vol. 129, no. 7, pp. 1751-62, 2002.
B. Houchmandzadeh, Wieschaus, E., and Leibler, S., Establishment of developmental precision and proportions in the early Drosophila embryo., Nature, vol. 415, no. 6873, pp. 798-802, 2002.
B. Houchmandzadeh, Wieschaus, E., and Leibler, S., Establishment of developmental precision and proportions in the early Drosophila embryo., Nature, vol. 415, no. 6873, pp. 798-802, 2002.
B. Houchmandzadeh, Wieschaus, E., and Leibler, S., Establishment of developmental precision and proportions in the early Drosophila embryo., Nature, vol. 415, no. 6873, pp. 798-802, 2002.
D. J. Brooks, Fresco, J. R., Lesk, A. M., and Singh, M., Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code., Mol Biol Evol, vol. 19, no. 10, pp. 1645-55, 2002.
B. P. Berman, Nibu, Y., Pfeiffer, B. D., Tomancak, P., Celniker, S. E., Levine, M., Rubin, G. M., and Eisen, M. B., Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome., Proc Natl Acad Sci U S A, vol. 99, no. 2, pp. 757-62, 2002.
B. P. Berman, Nibu, Y., Pfeiffer, B. D., Tomancak, P., Celniker, S. E., Levine, M., Rubin, G. M., and Eisen, M. B., Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome., Proc Natl Acad Sci U S A, vol. 99, no. 2, pp. 757-62, 2002.
M. van de Rijn, Perou, C. M., Tibshirani, R., Haas, P., Kallioniemi, O., Kononen, J., Torhorst, J., Sauter, G., Zuber, M., Köchli, O. R., Mross, F., Dieterich, H., Seitz, R., Ross, D., Botstein, D., and Brown, P., Expression of cytokeratins 17 and 5 identifies a group of breast carcinomas with poor clinical outcome., Am J Pathol, vol. 161, no. 6, pp. 1991-6, 2002.
M. van de Rijn, Perou, C. M., Tibshirani, R., Haas, P., Kallioniemi, O., Kononen, J., Torhorst, J., Sauter, G., Zuber, M., Köchli, O. R., Mross, F., Dieterich, H., Seitz, R., Ross, D., Botstein, D., and Brown, P., Expression of cytokeratins 17 and 5 identifies a group of breast carcinomas with poor clinical outcome., Am J Pathol, vol. 161, no. 6, pp. 1991-6, 2002.
M. Markstein, Markstein, P., Markstein, V., and Levine, M. S., Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo., Proc Natl Acad Sci U S A, vol. 99, no. 2, pp. 763-8, 2002.
H. Yoshimoto, Saltsman, K., Gasch, A. P., Li, H. Xia, Ogawa, N., Botstein, D., Brown, P. O., and Cyert, M. S., Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae., J Biol Chem, vol. 277, no. 34, pp. 31079-88, 2002.
H. Yoshimoto, Saltsman, K., Gasch, A. P., Li, H. Xia, Ogawa, N., Botstein, D., Brown, P. O., and Cyert, M. S., Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae., J Biol Chem, vol. 277, no. 34, pp. 31079-88, 2002.
N. Harafuji, Keys, D. N., and Levine, M., Genome-wide identification of tissue-specific enhancers in the Ciona tadpole., Proc Natl Acad Sci U S A, vol. 99, no. 10, pp. 6802-5, 2002.
M. Diehn, Alizadeh, A. A., Rando, O. J., Liu, C. Long, Stankunas, K., Botstein, D., Crabtree, G. R., and Brown, P. O., Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation., Proc Natl Acad Sci U S A, vol. 99, no. 18, pp. 11796-801, 2002.
M. Diehn, Alizadeh, A. A., Rando, O. J., Liu, C. Long, Stankunas, K., Botstein, D., Crabtree, G. R., and Brown, P. O., Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation., Proc Natl Acad Sci U S A, vol. 99, no. 18, pp. 11796-801, 2002.
B. K. Jones, Levorse, J., and Tilghman, S. M., A human H19 transgene exhibits impaired paternal-specific imprint acquisition and maintenance in mice., Hum Mol Genet, vol. 11, no. 4, pp. 411-8, 2002.
M. L. Whitfield, Sherlock, G., Saldanha, A. J., Murray, J. I., Ball, C. A., Alexander, K. E., Matese, J. C., Perou, C. M., Hurt, M. M., Brown, P. O., and Botstein, D., Identification of genes periodically expressed in the human cell cycle and their expression in tumors., Mol Biol Cell, vol. 13, no. 6, pp. 1977-2000, 2002.
M. L. Whitfield, Sherlock, G., Saldanha, A. J., Murray, J. I., Ball, C. A., Alexander, K. E., Matese, J. C., Perou, C. M., Hurt, M. M., Brown, P. O., and Botstein, D., Identification of genes periodically expressed in the human cell cycle and their expression in tumors., Mol Biol Cell, vol. 13, no. 6, pp. 1977-2000, 2002.
A. Stathopoulos and Levine, M., Linear signaling in the Toll-Dorsal pathway of Drosophila: activated Pelle kinase specifies all threshold outputs of gene expression while the bHLH protein Twist specifies a subset., Development, vol. 129, no. 14, pp. 3411-9, 2002.
A. Stathopoulos and Levine, M., Linear signaling in the Toll-Dorsal pathway of Drosophila: activated Pelle kinase specifies all threshold outputs of gene expression while the bHLH protein Twist specifies a subset., Development, vol. 129, no. 14, pp. 3411-9, 2002.
A. Stathopoulos and Levine, M., Linear signaling in the Toll-Dorsal pathway of Drosophila: activated Pelle kinase specifies all threshold outputs of gene expression while the bHLH protein Twist specifies a subset., Development, vol. 129, no. 14, pp. 3411-9, 2002.
J. R. Pollack, Sørlie, T., Perou, C. M., Rees, C. A., Jeffrey, S. S., Lonning, P. E., Tibshirani, R., Botstein, D., Børresen-Dale, A. - L., and Brown, P. O., Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors., Proc Natl Acad Sci U S A, vol. 99, no. 20, pp. 12963-8, 2002.
J. R. Pollack, Sørlie, T., Perou, C. M., Rees, C. A., Jeffrey, S. S., Lonning, P. E., Tibshirani, R., Botstein, D., Børresen-Dale, A. - L., and Brown, P. O., Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors., Proc Natl Acad Sci U S A, vol. 99, no. 20, pp. 12963-8, 2002.
E. W. Trotter, Kao, C. M. - F., Berenfeld, L., Botstein, D., Petsko, G. A., and Gray, J. V., Misfolded proteins are competent to mediate a subset of the responses to heat shock in Saccharomyces cerevisiae., J Biol Chem, vol. 277, no. 47, pp. 44817-25, 2002.
V. C. Calhoun, Stathopoulos, A., and Levine, M., Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex., Proc Natl Acad Sci U S A, vol. 99, no. 14, pp. 9243-7, 2002.
O. G. Troyanskaya, Arbell, O., Koren, Y., Landau, G. M., and Bolshoy, A., Sequence complexity profiles of prokaryotic genomic sequences: a fast algorithm for calculating linguistic complexity., Bioinformatics, vol. 18, no. 5, pp. 679-88, 2002.
T. Lecuit, Samanta, R., and Wieschaus, E., slam encodes a developmental regulator of polarized membrane growth during cleavage of the Drosophila embryo., Dev Cell, vol. 2, no. 4, pp. 425-36, 2002.
J. Cowden and Levine, M., The Snail repressor positions Notch signaling in the Drosophila embryo., Development, vol. 129, no. 7, pp. 1785-93, 2002.
N. Brenner, Agam, O., Bialek, W., and van Steveninck, Rde Ruyter, Statistical properties of spike trains: universal and stimulus-dependent aspects., Phys Rev E Stat Nonlin Soft Matter Phys, vol. 66, no. 3 Pt 1, p. 031907, 2002.
W. Wang, J Cherry, M., Botstein, D., and Li, H., A systematic approach to reconstructing transcription networks in Saccharomycescerevisiae., Proc Natl Acad Sci U S A, vol. 99, no. 26, pp. 16893-8, 2002.
W. Wang, J Cherry, M., Botstein, D., and Li, H., A systematic approach to reconstructing transcription networks in Saccharomycescerevisiae., Proc Natl Acad Sci U S A, vol. 99, no. 26, pp. 16893-8, 2002.
W. Wang, J Cherry, M., Botstein, D., and Li, H., A systematic approach to reconstructing transcription networks in Saccharomycescerevisiae., Proc Natl Acad Sci U S A, vol. 99, no. 26, pp. 16893-8, 2002.
E. S. Click, Stearns, T., and Botstein, D., Systematic structure-function analysis of the small GTPase Arf1 in yeast., Mol Biol Cell, vol. 13, no. 5, pp. 1652-64, 2002.
A. Di Gregorio, Harland, R. M., Levine, M., and Casey, E. Silva, Tail morphogenesis in the ascidian, Ciona intestinalis, requires cooperation between notochord and muscle., Dev Biol, vol. 244, no. 2, pp. 385-95, 2002.
K. Sayama, Diehn, M., Matsuda, K., Lunderius, C., Tsai, M., Tam, S. - Y., Botstein, D., Brown, P. O., and Galli, S. J., Transcriptional response of human mast cells stimulated via the Fc(epsilon)RI and identification of mast cells as a source of IL-11., BMC Immunol, vol. 3, p. 5, 2002.
A. Stathopoulos, Van Drenth, M., Erives, A., Markstein, M., and Levine, M., Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo., Cell, vol. 111, no. 5, pp. 687-701, 2002.

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