List of Faculty Publications

Below is a list of Faculty publications imported from PubMed or manually added. By default, publications are sorted by year with titles displayed in ascending alphabetical order.
Shortcuts: Wühr, Martin | Wingreen, Ned | Wieschaus, Eric | Troyanskaya, Olga | Tilghman, Shirley | Storey, John | Singh, Mona | Shvartsman, Stanislav | Shaevitz, Joshua | Rabinowitz, Joshua | Murphy, Coleen | Levine, Michael {Levine, Michael S.} | Gregor, Thomas | Botstein, David | Bialek, William | Ayroles, Julien | Andolfatto, Peter | Akey, Joshua

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2017
G. S. Ducker, Ghergurovich, J. M., Mainolfi, N., Suri, V., Jeong, S. K., Li, S. Hsin- Jung, Friedman, A., Manfredi, M. G., Gitai, Z., Kim, H., and Rabinowitz, J. D., “Human SHMT inhibitors reveal defective glycine import as a targetable metabolic vulnerability of diffuse large B-cell lymphoma.”, Proc Natl Acad Sci U S A, vol. 114, no. 43, pp. 11404-11409, 2017.
2015
J. J. Kamphorst, Nofal, M., Commisso, C., Hackett, S. R., Lu, W., Grabocka, E., Heiden, M. G. Vander, Miller, G., Drebin, J. A., Bar-Sagi, D., Thompson, C. B., and Rabinowitz, J. D., “Human pancreatic cancer tumors are nutrient poor and tumor cells actively scavenge extracellular protein.”, Cancer Res, vol. 75, no. 3, pp. 544-53, 2015.
2014
L. Aristilde, Lewis, I. A., Park, J. O., and Rabinowitz, J. D., “Hierarchy in Pentose Sugar Metabolism in Clostridium Acetobutylicum.”, Appl Environ Microbiol, 2014.
M. Schumer, Cui, R., Powell, D. L., Dresner, R., Rosenthal, G. G., and Andolfatto, P., “High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species.”, Elife, vol. 3, 2014.
M. Schumer, Rosenthal, G. G., and Andolfatto, P., “How common is homoploid hybrid speciation?”, Evolution, vol. 68, no. 6, pp. 1553-60, 2014.
J. Fan, Teng, X., Liu, L., Mattaini, K. R., Looper, R. E., Heiden, M. G. Vander, and Rabinowitz, J. D., “Human Phosphoglycerate Dehydrogenase Produces the Oncometabolite d-2-Hydroxyglutarate.”, ACS Chem Biol, 2014.
2013
J. J. Kamphorst, Cross, J. R., Fan, J., de Stanchina, E., Mathew, R., White, E. P., Thompson, C. B., and Rabinowitz, J. D., “Hypoxic and Ras-transformed cells support growth by scavenging unsaturated fatty acids from lysophospholipids.”, Proc Natl Acad Sci U S A, vol. 110, no. 22, pp. 8882-7, 2013.
2012
S. Wang, Furchtgott, L., Huang, K. Casey, and Shaevitz, J. W., “Helical insertion of peptidoglycan produces chiral ordering of the bacterial cell wall.”, Proc Natl Acad Sci U S A, vol. 109, no. 10, pp. E595-604, 2012.
S. L. Grady, Hwang, J., Vastag, L., Rabinowitz, J. D., and Shenk, T., “Herpes simplex virus 1 infection activates poly(ADP-ribose) polymerase and triggers the degradation of poly(ADP-ribose) glycohydrolase.”, J Virol, vol. 86, no. 15, pp. 8259-68, 2012.
E. Farley and Levine, M., “HOT DNAs: a novel class of developmental enhancers.”, Genes Dev, vol. 26, no. 9, pp. 873-6, 2012.
L. J. Terry, Vastag, L., Rabinowitz, J. D., and Shenk, T., “Human kinome profiling identifies a requirement for AMP-activated protein kinase during human cytomegalovirus infection.”, Proc Natl Acad Sci U S A, vol. 109, no. 8, pp. 3071-6, 2012.
2010
P. L. Nara, Tobin, G. J., A Chaudhuri, R., Trujillo, J. D., Lin, G., Cho, M. W., Levin, S. A., Ndifon, W., and Wingreen, N. S., “How can vaccines against influenza and other viral diseases be made more effective?”, PLoS Biol, vol. 8, no. 12, p. e1000571, 2010.
A. M. Berezhkovskii, Sample, C., and Shvartsman, S. Y., “How long does it take to establish a morphogen gradient?”, Biophys J, vol. 99, no. 8, pp. L59-61, 2010.
2009
K. L. Olszewski, Morrisey, J. M., Wilinski, D., Burns, J. M., Vaidya, A. B., Rabinowitz, J. D., and Llinás, M., “Host-parasite interactions revealed by Plasmodium falciparum metabolomics.”, Cell Host Microbe, vol. 5, no. 2, pp. 191-9, 2009.
J. Song and Singh, M., “How and when should interactome-derived clusters be used to predict functional modules and protein function?”, Bioinformatics, vol. 25, no. 23, pp. 3143-50, 2009.
2008
J. - W. Hong, Hendrix, D. A., Papatsenko, D., and Levine, M. S., “How the Dorsal gradient works: insights from postgenome technologies.”, Proc Natl Acad Sci U S A, vol. 105, no. 51, pp. 20072-6, 2008.
2007
P. Andolfatto, “Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome.”, Genome Res, vol. 17, no. 12, pp. 1755-62, 2007.
J. - L. Li, Car, R., Tang, C., and Wingreen, N. S., “Hydrophobic interaction and hydrogen-bond network for a methane pair in liquid water.”, Proc Natl Acad Sci U S A, vol. 104, no. 8, pp. 2626-30, 2007.
2006
Z. Barutcuoglu, Schapire, R. E., and Troyanskaya, O. G., “Hierarchical multi-label prediction of gene function.”, Bioinformatics, vol. 22, no. 7, pp. 830-6, 2006.
W. Lu, Kimball, E., and Rabinowitz, J. D., “A high-performance liquid chromatography-tandem mass spectrometry method for quantitation of nitrogen-containing intracellular metabolites.”, J Am Soc Mass Spectrom, vol. 17, no. 1, pp. 37-50, 2006.
A. M. Berezhkovskii, Monine, M. I., Muratov, C. B., and Shvartsman, S. Y., “Homogenization of boundary conditions for surfaces with regular arrays of traps.”, J Chem Phys, vol. 124, no. 3, p. 036103, 2006.
E. Emberly and Wingreen, N. S., “Hourglass model for a protein-based circadian oscillator.”, Phys Rev Lett, vol. 96, no. 3, p. 038303, 2006.
2005
M. J. Brauer, Saldanha, A. J., Dolinski, K., and Botstein, D., “Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures.”, Mol Biol Cell, vol. 16, no. 5, pp. 2503-17, 2005.
2004
S. Still and Bialek, W., “How many clusters? An information-theoretic perspective.”, Neural Comput, vol. 16, no. 12, pp. 2483-506, 2004.
2002
B. K. Jones, Levorse, J., and Tilghman, S. M., “A human H19 transgene exhibits impaired paternal-specific imprint acquisition and maintenance in mice.”, Hum Mol Genet, vol. 11, no. 4, pp. 411-8, 2002.
1998
P. Morize, Christiansen, A. E., Costa, M., Parks, S., and Wieschaus, E., “Hyperactivation of the folded gastrulation pathway induces specific cell shape changes.”, Development, vol. 125, no. 4, pp. 589-97, 1998.