List of Faculty Publications

Below is a list of Faculty publications imported from PubMed or manually added. By default, publications are sorted by year with titles displayed in ascending alphabetical order.
Shortcuts: Wühr, Martin | Wingreen, Ned | Wieschaus, Eric | Troyanskaya, Olga | Tilghman, Shirley | Storey, John | Singh, Mona | Shvartsman, Stanislav | Shaevitz, Joshua | Rabinowitz, Joshua | Murphy, Coleen | Levine, Michael {Levine, Michael S.} | Gregor, Thomas | Botstein, David | Bialek, William | Ayroles, Julien | Andolfatto, Peter | Akey, Joshua

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P. Jiang and Singh, M., CCAT: Combinatorial Code Analysis Tool for transcriptional regulation., Nucleic Acids Res, vol. 42, no. 5, pp. 2833-47, 2014.
J. A. Capra and Singh, M., Characterization and prediction of residues determining protein functional specificity., Bioinformatics, vol. 24, no. 13, pp. 1473-80, 2008.
J. A. Capra and Singh, M., Characterization and prediction of residues determining protein functional specificity., Bioinformatics, vol. 24, no. 13, pp. 1473-80, 2008.
R. Osada, Zaslavsky, E., and Singh, M., Comparative analysis of methods for representing and searching for transcription factor binding sites., Bioinformatics, vol. 20, no. 18, pp. 3516-25, 2004.
R. Osada, Zaslavsky, E., and Singh, M., Comparative analysis of methods for representing and searching for transcription factor binding sites., Bioinformatics, vol. 20, no. 18, pp. 3516-25, 2004.
R. Osada, Zaslavsky, E., and Singh, M., Comparative analysis of methods for representing and searching for transcription factor binding sites., Bioinformatics, vol. 20, no. 18, pp. 3516-25, 2004.
K. Jim, Parmar, K., Singh, M., and Tavazoie, S., A cross-genomic approach for systematic mapping of phenotypic traits to genes., Genome Res, vol. 14, no. 1, pp. 109-15, 2004.
A. Pane, Jiang, P., Zhao, D. Yanling, Singh, M., and Schüpbach, T., The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline., EMBO J, vol. 30, no. 22, pp. 4601-15, 2011.
A. Pane, Jiang, P., Zhao, D. Yanling, Singh, M., and Schüpbach, T., The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline., EMBO J, vol. 30, no. 22, pp. 4601-15, 2011.
A. Pane, Jiang, P., Zhao, D. Yanling, Singh, M., and Schüpbach, T., The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline., EMBO J, vol. 30, no. 22, pp. 4601-15, 2011.
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J. L. Wetzel and Singh, M., Sharing DNA-binding information across structurally similar proteins enables accurate specificity determination., Nucleic Acids Res, vol. 48, no. 2, p. e9, 2020.
Y. Pritykin and Singh, M., Simple topological features reflect dynamics and modularity in protein interaction networks., PLoS Comput Biol, vol. 9, no. 10, p. e1003243, 2013.
Y. Pritykin and Singh, M., Simple topological features reflect dynamics and modularity in protein interaction networks., PLoS Comput Biol, vol. 9, no. 10, p. e1003243, 2013.
C. L. Kingsford, Chazelle, B., and Singh, M., Solving and analyzing side-chain positioning problems using linear and integer programming., Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
C. L. Kingsford, Chazelle, B., and Singh, M., Solving and analyzing side-chain positioning problems using linear and integer programming., Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
C. L. Kingsford, Chazelle, B., and Singh, M., Solving and analyzing side-chain positioning problems using linear and integer programming., Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
C. L. Kingsford, Chazelle, B., and Singh, M., Solving and analyzing side-chain positioning problems using linear and integer programming., Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
C. L. Kingsford, Chazelle, B., and Singh, M., Solving and analyzing side-chain positioning problems using linear and integer programming., Bioinformatics, vol. 21, no. 7, pp. 1028-36, 2005.
P. Jiang and Singh, M., SPICi: a fast clustering algorithm for large biological networks., Bioinformatics, vol. 26, no. 8, pp. 1105-11, 2010.