Publications Search Advanced Filters Type - Any -Journal Article Year - Any -2022202120202019201820172016201520142013201220112010200920082007200620052004200320022001200019991998199719961995199419931992199119901989198819871986198519841982198119801979197819771976 AuthorTitleTypeYear #ABCDEFGHIJKLMNOPQRSTUVWXYZ 128 Publications Applied Filters: First Letter Of Title: S Reset S 1.Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Cherry M, Project SGD. Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast. 2006;23(12):857–65. 1.Weng S, Dong Q, Balakrishnan R, Christie KR, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hong E, Issel-Tarver L, Sethuraman A, Theesfeld C, Andrada R, Binkley G, Lane C, Schroeder M, Botstein D, Cherry M. Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Res. 2003;31(1):216–8. 1.Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry M. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 2002;30(1):69–72. 1.Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry M. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 2004;32(Database issue):D311–4. 1.Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry M. Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res. 2010;38(Database issue):D433–6. 1.Issel-Tarver L, Christie KR, Dolinski K, Andrada R, Balakrishnan R, Ball CA, Binkley G, Dong S, Dwight SS, Fisk DG, Harris M, Schroeder M, Sethuraman A, Tse K, Weng S, Botstein D, Cherry M. Saccharomyces Genome Database. Methods Enzymol. 2002;350:329–46. 1.Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry M. Saccharomyces genome database: underlying principles and organisation. Brief Bioinform. 2004;5(1):9–22. 1.Koyuncu E, Purdy JG, Rabinowitz JD, Shenk T. Saturated very long chain fatty acids are required for the production of infectious human cytomegalovirus progeny. PLoS Pathog. 2013;9(5):e1003333. 1.Huttenhower C, Hibbs M, Myers C, Troyanskaya OG. A scalable method for integration and functional analysis of multiple microarray datasets. Bioinformatics. 2006;22(23):2890–7. 1.Wingreen NS, Miller J, Cox EC. Scaling of mutational effects in models for pleiotropy. Genetics. 2003;164(3):1221–8. 1.Zallen JA, Cohen Y, Hudson AM, Cooley L, Wieschaus E, Schejter ED. SCAR is a primary regulator of Arp2/3-dependent morphological events in Drosophila. J Cell Biol. 2002;156(4):689–701. 1.Christiaen L, Wagner E, Shi W, Levine M. The sea squirt Ciona intestinalis. Cold Spring Harb Protoc. 2009;2009(12):pdb.emo138. 1.Murphy CT. The search for DAF-16/FOXO transcriptional targets: approaches and discoveries. Exp Gerontol. 2006;41(10):910–21. 1.Kocher SD, Tsuruda JM, Gibson JD, Emore CM, Arechavaleta-Velasco ME, Queller DC, Strassmann JE, Grozinger CM, Gribskov MR, San Miguel P, Westerman R, Hunt GJ. A Search for Parent-of-Origin Effects on Honey Bee Gene Expression. G3 (Bethesda). 2015;5(8):1657–62. PMCID: PMC4528322 1.Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ. Searching for collective behavior in a large network of sensory neurons. PLoS Comput Biol. 2014;10(1):e1003408. 1.Stephens GJ, Osborne LC, Bialek W. Searching for simplicity in the analysis of neurons and behavior. Proc Natl Acad Sci U S A. 2011;108 Suppl 3:15565–71. 1.Hu TT, Eisen MB, Thornton KR, Andolfatto P. A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res. 2013;23(1):89–98. 1.Peifer M, Wieschaus E. The segment polarity gene armadillo encodes a functionally modular protein that is the Drosophila homolog of human plakoglobin. Cell. 1990;63(6):1167–76. 1.Peifer M, Rauskolb C, Williams M, Riggleman B, Wieschaus E. The segment polarity gene armadillo interacts with the wingless signaling pathway in both embryonic and adult pattern formation. Development. 1991;111(4):1029–43. 1.Bejsovec A, Wieschaus E. Segment polarity gene interactions modulate epidermal patterning in Drosophila embryos. Development. 1993;119(2):501–17. 1.Hughes KA, Ayroles J, Reedy MM, Drnevich JM, Rowe KC, Ruedi EA, Cáceres CE, Paige KN. Segregating variation in the transcriptome: cis regulation and additivity of effects. Genetics. 2006;173(3):1347–55. 1.Butte AJ, Sarkar IN, Ramoni M, Lussier Y, Troyanskaya O. Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinformatics. 2009;10 Suppl 2:I1. 1.Bachtrog D, Andolfatto P. Selection, recombination and demographic history in Drosophila miranda. Genetics. 2006;174(4):2045–59. 1.Chen KM, Cofer EM, Zhou J, Troyanskaya OG. Selene: a PyTorch-based deep learning library for sequence data. Nat Methods. 2019;16(4):315–318. PMID: 30923381 1.Greenfield D, McEvoy AL, Shroff H, Crooks GE, Wingreen NS, Betzig E, Liphardt J. Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy. PLoS Biol. 2009;7(6):e1000137. 1.Wang H, Wingreen NS, Mukhopadhyay R. Self-organized periodicity of protein clusters in growing bacteria. Phys Rev Lett. 2008;101(21):218101. 1.Muratov CB, Gordon P V, Shvartsman SY. Self-similar dynamics of morphogen gradients. Phys Rev E Stat Nonlin Soft Matter Phys. 2011;84(4 Pt 1):041916. 1.Osborne LC, Lisberger SG, Bialek W. A sensory source for motor variation. Nature. 2005;437(7057):412–6. 1.Bajad SU, Lu W, Kimball EH, Yuan J, Peterson C, Rabinowitz JD. Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry. J Chromatogr A. 2006;1125(1):76–88. 1.Troyanskaya OG, Arbell O, Koren Y, Landau GM, Bolshoy A. Sequence complexity profiles of prokaryotic genomic sequences: a fast algorithm for calculating linguistic complexity. Bioinformatics. 2002;18(5):679–88. 1.Yang L, Canaveras JCG, Chen Z, Wang L, Liang L, Jang C, Mayr JA, Zhang Z, Ghergurovich JM, Zhan L, Joshi S, Hu Z, McReynolds MR, Su X, White E, Morscher RJ, Rabinowitz JD. Serine Catabolism Feeds NADH when Respiration Is Impaired. Cell Metab. 2020;31(4):809–821.e6. PMID: 32187526 1.Ye J, Fan J, Venneti S, Wan Y-W, Pawel BR, Zhang J, Finley LWS, Lu C, Lindsten T, Cross JR, Qing G, Liu Z, Simon C, Rabinowitz JD, Thompson CB. Serine Catabolism Regulates Mitochondrial Redox Control during Hypoxia. Cancer Discov. 2014;4(12):1406–17. 1.Rodriguez AE, Ducker GS, Billingham LK, Martinez CA, Mainolfi N, Suri V, Friedman A, Manfredi MG, Weinberg SE, Rabinowitz JD, Chandel NS. Serine Metabolism Supports Macrophage IL-1β Production. Cell Metab. 2019;29(4):1003–1011.e4. PMCID: PMC6447453 1.Jabeen S, Zucknick M, Nome M, Dannenfelser R, Fleischer T, Kumar S, Lüders T, Gythfeldt H von der L, Troyanskaya O, Kyte JA, Børresen-Dale A-L, Naume B, Tekpli X, Engebraaten O, Kristensen V. Serum cytokine levels in breast cancer patients during neoadjuvant treatment with bevacizumab. Oncoimmunology. 2018;7(11):e1457598. PMCID: PMC6205029 1.Hong J-W, Hendrix DA, Levine MS. Shadow enhancers as a source of evolutionary novelty. Science. 2008;321(5894):1314. 1.Perry MW, Boettiger AN, Bothma JP, Levine M. Shadow enhancers foster robustness of Drosophila gastrulation. Curr Biol. 2010;20(17):1562–7. 1.El-Sherif E, Levine M. Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo. Curr Biol. 2016;26(9):1164–9. 1.Gregor T, McGregor AP, Wieschaus EF. Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos. Dev Biol. 2008;316(2):350–8. 1.Wetzel JL, Singh M. Sharing DNA-binding information across structurally similar proteins enables accurate specificity determination. Nucleic Acids Res. 2020;48(2):e9. PMCID: PMC7028011 1.Little SC, Wieschaus EF. Shifting patterns: merging molecules, morphogens, motility, and methodology. Dev Cell. 2011;21(1):2–4. 1.Shvartsman SY. Shooting from the hip: spatial control of signal release by intracellular waves. Proc Natl Acad Sci U S A. 2002;99(14):9087–9. 1.Zusman SB, Sweeton D, Wieschaus EF. short gastrulation, a mutation causing delays in stage-specific cell shape changes during gastrulation in Drosophila melanogaster. Dev Biol. 1988;129(2):417–27. 1.Di Talia S, Wieschaus EF. Short-term integration of Cdc25 dynamics controls mitotic entry during Drosophila gastrulation. Dev Cell. 2012;22(4):763–74. 1.Muratov CB, Shvartsman SY. Signal propagation and failure in discrete autocrine relays. Phys Rev Lett. 2004;93(11):118101. 1.Bejsovec A, Wieschaus E. Signaling activities of the Drosophila wingless gene are separately mutable and appear to be transduced at the cell surface. Genetics. 1995;139(1):309–20. 1.Berezhkovskii AM, Coppey M, Shvartsman SY. Signaling gradients in cascades of two-state reaction-diffusion systems. Proc Natl Acad Sci U S A. 2009;106(4):1087–92. 1.Di Talia S, Wieschaus EF. Simple biochemical pathways far from steady state can provide switchlike and integrated responses. Biophys J. 2014;107(3):L1–4. 1.Bratton BP, Shaevitz JW. Simple Experimental Methods for Determining the Apparent Focal Shift in a Microscope System. PLoS One. 2015;10(8):e0134616. PMCID: PMC4536040 1.Pritykin Y, Singh M. Simple topological features reflect dynamics and modularity in protein interaction networks. PLoS Comput Biol. 2013;9(10):e1003243. 1.Haley B, Hendrix D, Trang V, Levine M. A simplified miRNA-based gene silencing method for Drosophila melanogaster. Dev Biol. 2008;321(2):482–90. Pagination Current page 1 Page 2 Page 3 Next page Next › Last page Last »