Publications

45 Publications
Applied Filters: First Letter Of Title: R Reset

R

1.
Vacher J, Camper SA, Krumlauf R, Compton RS, Tilghman SM. raf regulates the postnatal repression of the mouse alpha-fetoprotein gene at the posttranscriptional level. Mol Cell Biol. 1992;12(2):856–64.
1.
Fukaya T, Lim B, Levine M. Rapid Rates of Pol II Elongation in the Drosophila Embryo. Curr Biol. 2017;27(9):1387–1391. PMCID: PMC5665007
1.
McIsaac S, Oakes BL, Botstein D, Noyes MB. Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters. J Vis Exp. 2013;(81):e51153.
1.
Jindal G, Goyal Y, Burdine R, Rauen K, Shvartsman S. RASopathies: unraveling mechanisms with animal models. Disease models & mechanisms. 2015;8(8):769–82. PMCID: PMC4527292
1.
Skoge ML, Endres RG, Wingreen NS. Receptor-receptor coupling in bacterial chemotaxis: evidence for strongly coupled clusters. Biophys J. 2006;90(12):4317–26.
1.
Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, Ceol A, Aryamontri AC, Oughtred R, Livstone M, Boucher L, Botstein D, Dolinski K, Berardini T, Huala E, Tyers M, Eisenberg D, Cesareni G, Hermjakob H. Recurated protein interaction datasets. Nat Methods. 2009;6(12):860–1.
1.
Hsu A-L, Murphy CT, Kenyon C. Regulation of aging and age-related disease by DAF-16 and heat-shock factor. Science. 2003;300(5622):1142–5.
1.
Ahmed Y, Hayashi S, Levine A, Wieschaus E. Regulation of armadillo by a Drosophila APC inhibits neuronal apoptosis during retinal development. Cell. 1998;93(7):1171–82.
1.
Wang Y, Kocher S, Linksvayer T, Grozinger C, Page R, Amdam G V. Regulation of behaviorally associated gene networks in worker honey bee ovaries. The Journal of experimental biology. 2012;215(Pt 1):124–34. PMCID: PMC3233392
1.
Chopra VS, Hong J-W, Levine M. Regulation of Hox gene activity by transcriptional elongation in Drosophila. Curr Biol. 2009;19(8):688–93.
1.
Xu Y-F, Zhao X, Glass DS, Absalan F, Perlman DH, Broach JR, Rabinowitz JD. Regulation of yeast pyruvate kinase by ultrasensitive allostery independent of phosphorylation. Mol Cell. 2012;48(1):52–62.
1.
Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, Tavazoie S. Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli. Mol Syst Biol. 2010;6:378.
1.
Markstein M, Zinzen R, Markstein P, Yee K-P, Erives A, Stathopoulos A, Levine M. A regulatory code for neurogenic gene expression in the Drosophila embryo. Development. 2004;131(10):2387–94.
1.
Vastag L, Jorgensen P, Peshkin L, Wei R, Rabinowitz JD, Kirschner MW. Remodeling of the metabolome during early frog development. PLoS One. 2011;6(2):e16881.
1.
Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lønning PE, Brown PO, Børresen-Dale A-L, Botstein D. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A. 2003;100(14):8418–23.
1.
Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, Dunham M. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet. 2008;4(12):e1000303.
1.
Merrill PT, Sweeton D, Wieschaus E. Requirements for autosomal gene activity during precellular stages of Drosophila melanogaster. Development. 1988;104(3):495–509.
1.
1.
Sourjik V, Wingreen NS. Responding to chemical gradients: bacterial chemotaxis. Curr Opin Cell Biol. 2012;24(2):262–8.
1.
Tolwinski NS, Wieschaus E. Rethinking WNT signaling. Trends Genet. 2004;20(4):177–81.
1.
Levine M. Retrospective. Walter Gehring (1939-2014). Science. 2014;345(6194):277.
1.
Ducker GS, Chen L, Morscher RJ, Ghergurovich JM, Esposito M, Teng X, Kang Y, Rabinowitz JD. Reversal of Cytosolic One-Carbon Flux Compensates for Loss of the Mitochondrial Folate Pathway. Cell Metab. 2016;.
1.
Rogers RL, Shao L, Sanjak JS, Andolfatto P, Thornton KR. Revised Annotations, Sex-Biased Expression, and Lineage-Specific Genes in the Drosophila melanogaster Group. G3 (Bethesda). 2014;4(12):2345–51.
1.
Leffler EM, Bullaughey K, Matute DR, Meyer WK, Ségurel L, Venkat A, Andolfatto P, Przeworski M. Revisiting an old riddle: what determines genetic diversity levels within species?. PLoS Biol. 2012;10(9):e1001388.
1.
Clasquin MF, Melamud E, Singer A, Gooding JR, Xu X, Dong A, Cui H, Campagna S, Savchenko A, Yakunin AF, Rabinowitz JD, Caudy AA. Riboneogenesis in yeast. Cell. 2011;145(6):969–80.
1.
Nofal M, Rabinowitz JD. Ribosomes on the night shift. Science. 2018;360(6390):710–711. PMID: 29773733
1.
Fu F, Kocher S, Nowak M. The risk-return trade-off between solitary and eusocial reproduction. Ecology letters. 2015;18(1):74–84. PMCID: PMC5492949
1.
Mok WWK, Park JO, Rabinowitz JD, Brynildsen MP. RNA Futile Cycling in Model Persisters Derived from MazF Accumulation. MBio. 2015;6(6):e01588–15.
1.
Son HG, Seo M, Ham S, Hwang W, Lee D, An SWA, Artan M, Seo K, Kaletsky R, Arey R, Ryu Y, Ha CM, Kim YK, Murphy CT, Roh T-Y, Nam HG, Lee S-J V. RNA surveillance via nonsense-mediated mRNA decay is crucial for longevity in daf-2/insulin/IGF-1 mutant C. elegans. Nat Commun. 2017;8:14749. PMCID: PMC5347137
1.
Buescher JM, Antoniewicz MR, Boros LG, Burgess SC, Brunengraber H, Clish CB, DeBerardinis RJ, Feron O, Frezza C, Ghesquiere B, Gottlieb E, Hiller K, Jones RG, Kamphorst JJ, Kibbey RG, Kimmelman AC, Locasale JW, Lunt SY, Maddocks OD, Malloy C, Metallo CM, Meuillet EJ, Munger J, Nöh K, Rabinowitz JD, Ralser M, Sauer U, Stephanopoulos G, St-Pierre J, Tennant DA, Wittmann C, Heiden MGV, Vazquez A, Vousden K, Young JD, Zamboni N, Fendt S-M. A roadmap for interpreting (13)C metabolite labeling patterns from cells. Curr Opin Biotechnol. 2015;34:189–201.
1.
Ursell TS, Nguyen J, Monds RD, Colavin A, Billings G, Ouzounov N, Gitai Z, Shaevitz JW, Huang KC. Rod-like bacterial shape is maintained by feedback between cell curvature and cytoskeletal localization. Proc Natl Acad Sci U S A. 2014;111(11):E1025–34.
1.
Morgenstein RM, Bratton BP, Nguyen JP, Ouzounov N, Shaevitz JW, Gitai Z. RodZ links MreB to cell wall synthesis to mediate MreB rotation and robust morphogenesis. Proc Natl Acad Sci U S A. 2015;112(40):12510–5. PMCID: PMC4603514
1.
Peifer M, Orsulic S, Sweeton D, Wieschaus E. A role for the Drosophila segment polarity gene armadillo in cell adhesion and cytoskeletal integrity during oogenesis. Development. 1993;118(4):1191–207.
1.
Nikolić DL, Boettiger AN, Bar-Sagi D, Carbeck JD, Shvartsman SY. Role of boundary conditions in an experimental model of epithelial wound healing. Am J Physiol Cell Physiol. 2006;291(1):C68–75.
1.
Trinklein ND, Murray JI, Hartman SJ, Botstein D, Myers RM. The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response. Mol Biol Cell. 2004;15(3):1254–61.
1.
Tkačik G, Gregor T, Bialek W. The role of input noise in transcriptional regulation. PLoS One. 2008;3(7):e2774.
1.
Kaletsky R, Murphy CT. The role of insulin/IGF-like signaling in C. elegans longevity and aging. Dis Model Mech. 2010;3(7-8):415–9.
1.
Haselwandter CA, Wingreen NS. The role of membrane-mediated interactions in the assembly and architecture of chemoreceptor lattices. PLoS Comput Biol. 2014;10(12):e1003932.
1.
Schejter ED, Rose LS, Postner MA, Wieschaus E. Role of the zygotic genome in the restructuring of the actin cytoskeleton at the cycle-14 transition during Drosophila embryogenesis. Cold Spring Harb Symp Quant Biol. 1992;57:653–9.
1.
Peterson CN, Levchenko I, Rabinowitz JD, Baker TA, Silhavy TJ. RpoS proteolysis is controlled directly by ATP levels in Escherichia coli. Genes Dev. 2012;26(6):548–53.
1.
Helman A, Lim B, Andreu MJ, Kim Y, Shestkin T, Lu H, Jiménez G, Shvartsman SY, Paroush Z. RTK signaling modulates the Dorsal gradient. Development. 2012;139(16):3032–9.