Publications Search Advanced Filters Type - Any -Journal Article Year - Any -2022202120202019201820172016201520142013201220112010200920082007200620052004200320022001200019991998199719961995199419931992199119901989198819871986198519841982198119801979197819771976 AuthorTitleTypeYear #ABCDEFGHIJKLMNOPQRSTUVWXYZ 91 Publications Applied Filters: First Letter Of Title: P Reset P 1.Zhen Y, Aardema ML, Medina EM, Schumer M, Andolfatto P. Parallel molecular evolution in an herbivore community. Science. 2012;337(6102):1634–7. 1.Tilghman SM. Parental imprinting in the mouse. Harvey Lect. 1991;87:69–84. 1.Tilghman SM, Bartolomei MS, Webber AL, Brunkow ME, Saam J, Leighton PA, Pfeifer K, Zemel S. Parental imprinting of the H19 and Igf2 genes in the mouse. Cold Spring Harb Symp Quant Biol. 1993;58:287–95. 1.Bartolomei MS, Zemel S, Tilghman SM. Parental imprinting of the mouse H19 gene. Nature. 1991;351(6322):153–5. 1.Rabinowitz JD, Coller HA. Partners in the Warburg effect. Elife. 2016;5. 1.Polyakov O, He B, Swan M, Shaevitz JW, Kaschube M, Wieschaus E. Passive mechanical forces control cell-shape change during Drosophila ventral furrow formation. Biophys J. 2014;107(4):998–1010. 1.Zartman JJ, Cheung LS, Niepielko MG, Bonini C, Haley B, Yakoby N, Shvartsman SY. Pattern formation by a moving morphogen source. Phys Biol. 2011;8(4):045003. 1.Lembong J, Yakoby N, Shvartsman SY. Pattern formation by dynamically interacting network motifs. Proc Natl Acad Sci U S A. 2009;106(9):3213–8. 1.Kanodia JS, Liang H-L, Kim Y, Lim B, Zhan M, Lu H, Rushlow CA, Shvartsman SY. Pattern formation by graded and uniform signals in the early Drosophila embryo. Biophys J. 2012;102(3):427–33. 1.Cheung LS, Schüpbach T, Shvartsman SY. Pattern formation by receptor tyrosine kinases: analysis of the Gurken gradient in Drosophila oogenesis. Curr Opin Genet Dev. 2011;21(6):719–25. 1.Kulkarni R V, Huang KC, Kloster M, Wingreen NS. Pattern formation within Escherichia coli: diffusion, membrane attachment, and self-interaction of MinD molecules. Phys Rev Lett. 2004;93(22):228103. 1.Zallen JA, Wieschaus E. Patterned gene expression directs bipolar planar polarity in Drosophila. Dev Cell. 2004;6(3):343–55. 1.Halligan DL, Eyre-Walker A, Andolfatto P, Keightley PD. Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila. Genome Res. 2004;14(2):273–9. 1.Haddrill PR, Charlesworth B, Halligan DL, Andolfatto P. Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol. 2005;6(8):R67. 1.Lagha M, Bothma JP, Esposito E, Ng S, Stefanik L, Tsui C, Johnston J, Chen K, Gilmour DS, Zeitlinger J, Levine MS. Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo. Cell. 2013;153(5):976–87. 1.Levine M. Paused RNA polymerase II as a developmental checkpoint. Cell. 2011;145(4):502–11. 1.Liu LX, Rowe GC, Yang S, Li J, Damilano F, Chan MC, Lu W, Jang C, Wada S, Morley M, Hesse M, Fleischmann BK, Rabinowitz J, Das S, Rosenzweig A, Arany Z. PDK4 Inhibits Cardiac Pyruvate Oxidation in Late Pregnancy. Circ Res. 2017;. PMID: 28928113 1.Wang L, Xing X, Chen L, Yang L, Su X, Rabitz H, Lu W, Rabinowitz JD. Peak Annotation and Verification Engine for Untargeted LC-MS Metabolomics. Anal Chem. 2019;91(3):1838–1846. PMCID: PMC6501219 1.McKee SE, Zhang S, Chen L, Rabinowitz JD, Reyes TM. Perinatal high fat diet and early life methyl donor supplementation alter one carbon metabolism and DNA methylation in the brain. J Neurochem. 2018;145(5):362–373. PMCID: PMC6288810 1.Liu Q, Johnson EM, Lam RK, Wang Q, Ye HB, Wilson EN, Minhas PS, Liu L, Swarovski MS, Tran S, Wang J, Mehta SS, Yang X, Rabinowitz JD, Yang SS, Shamloo M, Mueller C, James ML, Andreasson KI. Peripheral TREM1 responses to brain and intestinal immunogens amplify stroke severity. Nat Immunol. 2019;20(8):1023–1034. PMID: 31263278 1.Bartlett TM, Bratton BP, Duvshani A, Miguel A, Sheng Y, Martin NR, Nguyen JP, Persat A, Desmarais SM, VanNieuwenhze MS, Huang KC, Zhu J, Shaevitz JW, Gitai Z. A Periplasmic Polymer Curves Vibrio cholerae and Promotes Pathogenesis. Cell. 2017;168(1-2):172–185.e15. PMCID: PMC5287421 1.Dixit A, Parnas O, Li B, Chen J, Fulco C, Jerby-Arnon L, Marjanovic N, Dionne D, Burks T, Raychowdhury R, Adamson B, Norman T, Lander E, Weissman J, Friedman N, Regev A. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens. Cell. 2016;167(7):1853–1866.e17. PMCID: PMC5181115 1.McIsaac S, Petti AA, Bussemaker HJ, Botstein D. Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway. Mol Biol Cell. 2012;23(15):2993–3007. 1.Lang GI, Rice DP, Hickman MJ, Sodergren E, Weinstock GM, Botstein D, Desai MM. Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature. 2013;500(7464):571–4. 1.Sella G, Petrov DA, Przeworski M, Andolfatto P. Pervasive natural selection in the Drosophila genome?. PLoS Genet. 2009;5(6):e1000495. 1.Nadimpalli S, Persikov A V, Singh M. Pervasive variation of transcription factor orthologs contributes to regulatory network evolution. PLoS Genet. 2015;11(3):e1005011. 1.Leung SY, Chen X, Chu KM, Yuen ST, Mathy J, Ji J, S Y Chan A, Li R, Law S, Troyanskaya OG, Tu I-P, Wong J, So S, Botstein D, Brown PO. Phospholipase A2 group IIA expression in gastric adenocarcinoma is associated with prolonged survival and less frequent metastasis. Proc Natl Acad Sci U S A. 2002;99(25):16203–8. 1.Gibney PA, Hickman MJ, Bradley PH, Matese JC, Botstein D. Phylogenetic portrait of the Saccharomyces cerevisiae functional genome. G3 (Bethesda). 2013;3(8):1335–40. 1.Cui R, Schumer M, Kruesi K, Walter R, Andolfatto P, Rosenthal GG. Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes. Evolution. 2013;67(8):2166–79. 1.Berezhkovskii AM, Shvartsman SY. Physical interpretation of mean local accumulation time of morphogen gradient formation. J Chem Phys. 2011;135(15):154115. 1.Bialek W, Setayeshgar S. Physical limits to biochemical signaling. Proc Natl Acad Sci U S A. 2005;102(29):10040–5. 1.Zemel S, Bartolomei MS, Tilghman SM. Physical linkage of two mammalian imprinted genes, H19 and insulin-like growth factor 2. Nat Genet. 1992;2(1):61–5. 1.Wingreen NS. Physics. Quantum many-body effects in a single-electron transistor. Science. 2004;304(5675):1258–9. 1.Papazyan R, Sun Z, Kim YH, Titchenell PM, Hill DA, Lu W, Damle M, Wan M, Zhang Y, Briggs ER, Rabinowitz JD, Lazar MA. Physiological Suppression of Lipotoxic Liver Damage by Complementary Actions of HDAC3 and SCAP/SREBP. Cell Metab. 2016;24(6):863–874. PMCID: PMC5159233 1.Abbondanzieri EA, Shaevitz JW, Block SM. Picocalorimetry of transcription by RNA polymerase. Biophys J. 2005;89(6):L61–3. 1.Pavan WJ, Tilghman SM. Piebald lethal (sl) acts early to disrupt the development of neural crest-derived melanocytes. Proc Natl Acad Sci U S A. 1994;91(15):7159–63. 1.Greene CS, Troyanskaya OG. PILGRM: an interactive data-driven discovery platform for expert biologists. Nucleic Acids Res. 2011;39(Web Server issue):W368–74. 1.Uhlmann WR, Bennett R, Botkin JR, Botstein D, Boughman JA, Chakravarti A, Clayton EW, Kahn J, Koenig B, Murray TH, Olson M V, Rowley J, Terry S, Valle D. Planning the genome institute’s future. Science. 2003;299(5612):1515; author reply 1515. 1.Pilizota T, Shaevitz JW. Plasmolysis and cell shape depend on solute outer-membrane permeability during hyperosmotic shock in E. coli. Biophys J. 2013;104(12):2733–42. 1.Lecuit T, Wieschaus E. Polarized insertion of new membrane from a cytoplasmic reservoir during cleavage of the Drosophila embryo. J Cell Biol. 2000;150(4):849–60. 1.Chopra VS, Hendrix DA, Core LJ, Tsui C, Lis JT, Levine M. The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo. Mol Cell. 2011;42(6):837–44. 1.Goodliffe JM, Wieschaus E, Cole MD. Polycomb mediates Myc autorepression and its transcriptional control of many loci in Drosophila. Genes Dev. 2005;19(24):2941–6. 1.Ranade K, Jorgenson E, Sheu WH-H, Pei D, Hsiung CA, Chiang F- tien, Chen Y-DI, Pratt R, Olshen RA, Curb D, Cox DR, Botstein D, Risch N. A polymorphism in the beta1 adrenergic receptor is associated with resting heart rate. Am J Hum Genet. 2002;70(4):935–42. 1.Ciccia A, Nimonkar A V, Hu Y, Hajdu I, Achar Y, Izhar L, Petit S, Adamson B, Yoon J, Kowalczykowski S, Livingston D, Haracska L, Elledge S. Polyubiquitinated PCNA recruits the ZRANB3 translocase to maintain genomic integrity after replication stress. Molecular cell. 2012;47(3):396–409. PMCID: PMC3613862 1.Wilson DJ, Hernandez RD, Andolfatto P, Przeworski M. A population genetics-phylogenetics approach to inferring natural selection in coding sequences. PLoS Genet. 2011;7(12):e1002395. 1.Dubuis J, Tkačik G, Wieschaus EF, Gregor T, Bialek W. Positional information, in bits. Proc Natl Acad Sci U S A. 2013;110(41):16301–8. 1.Tkačik G, Dubuis J, Petkova MD, Gregor T. Positional information, positional error, and readout precision in morphogenesis: a mathematical framework. Genetics. 2015;199(1):39–59. 1.Haddrill PR, Bachtrog D, Andolfatto P. Positive and negative selection on noncoding DNA in Drosophila simulans. Mol Biol Evol. 2008;25(9):1825–34. 1.Camper SA, Tilghman SM. Postnatal repression of the alpha-fetoprotein gene is enhancer independent. Genes Dev. 1989;3(4):537–46. 1.Di Talia S, She R, Blythe SA, Lu X, Zhang QF, Wieschaus EF. Posttranslational control of Cdc25 degradation terminates Drosophila’s early cell-cycle program. Curr Biol. 2013;23(2):127–32. 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