Publications

40 Publications
Applied Filters: First Letter Of Last Name: Z Reset

Z

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Zallen JA, Cohen Y, Hudson AM, Cooley L, Wieschaus E, Schejter ED. SCAR is a primary regulator of Arp2/3-dependent morphological events in Drosophila. J Cell Biol. 2002;156(4):689–701.
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Zallen JA, Wieschaus E. Patterned gene expression directs bipolar planar polarity in Drosophila. Dev Cell. 2004;6(3):343–55.
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Zartman JJ, Shvartsman SY. Unit operations of tissue development: epithelial folding. Annu Rev Chem Biomol Eng. 2010;1:231–46.
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Zartman JJ, Cheung LS, Niepielko MG, Bonini C, Haley B, Yakoby N, Shvartsman SY. Pattern formation by a moving morphogen source. Phys Biol. 2011;8(4):045003.
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Zartman JJ, Kanodia JS, Cheung LS, Shvartsman SY. Feedback control of the EGFR signaling gradient: superposition of domain-splitting events in Drosophila oogenesis. Development. 2009;136(17):2903–11.
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Zartman JJ, Kanodia JS, Yakoby N, Schafer X, Watson C, Schlichting K, Dahmann C, Shvartsman SY. Expression patterns of cadherin genes in Drosophila oogenesis. Gene Expr Patterns. 2009;9(1):31–6.
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Zartman JJ, Shvartsman SY. Enhancer organization: transistor with a twist or something in a different vein?. Curr Biol. 2007;17(24):R1048–50.
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Zartman JJ, Yakoby N, Bristow CA, Zhou X, Schlichting K, Dahmann C, Shvartsman SY. Cad74A is regulated by BR and is required for robust dorsal appendage formation in Drosophila oogenesis. Dev Biol. 2008;322(2):289–301.
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Zaslavsky E, Singh M. A combinatorial optimization approach for diverse motif finding applications. Algorithms Mol Biol. 2006;1:13.
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Zee BM, Levin RS, Xu B, LeRoy G, Wingreen NS, Garcia BA. In vivo residue-specific histone methylation dynamics. J Biol Chem. 2010;285(5):3341–50.
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Zemel S, Bartolomei MS, Tilghman SM. Physical linkage of two mammalian imprinted genes, H19 and insulin-like growth factor 2. Nat Genet. 1992;2(1):61–5.
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Zhang N, Zeng C, Wingreen NS. Fast accurate evaluation of protein solvent exposure. Proteins. 2004;57(3):565–76.
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Zhang Z, Zamojski M, Smith G, Willis T, Yianni V, Mendelev N, Pincas H, Seenarine N, Amper M, Vasoya M, Cheng W, Zaslavsky E, Nair V, Turgeon J, Bernard D, Troyanskaya O, Andoniadou C, Sealfon S, Ruf-Zamojski F. Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms. Cell reports. 2022;38(10):110467. PMCID: PMC8957708
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Zhang X, Schwarz KN, Zhang L, Fassioli F, Fu B, Nguyen LQ, Knowles RR, Scholes GD. Interference of nuclear wavepackets in a pair of proton transfer reactions. Proceedings of the National Academy of Sciences [Internet]. Proceedings of the National Academy of Sciences; 2022;119. Referenced from doi.org: Interference of nuclear wavepackets in a pair of proton transfer reactions
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Zhang X, Geng K, Jiang D, Scholes GD. Exciton Diffusion and Annihilation in an sp2 Carbon-Conjugated Covalent Organic Framework. Journal of the American Chemical Society [Internet]. American Chemical Society (ACS); 2022;144:16423–16432. Referenced from doi.org: Exciton Diffusion and Annihilation in an sp2 Carbon-Conjugated Covalent Organic Framework
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Zhang Y, Kurupati R, Liu L, Zhou XY, Zhang G, Hudaihed A, Filisio F, Giles-Davis W, Xu X, Karakousis GC, Schuchter LM, Xu W, Amaravadi R, Xiao M, Sadek N, Krepler C, Herlyn M, Freeman GJ, Rabinowitz JD, Ertl HCJ. Enhancing CD8(+) T Cell Fatty Acid Catabolism within a Metabolically Challenging Tumor Microenvironment Increases the Efficacy of Melanoma Immunotherapy. Cancer Cell. 2017;32(3):377–391.e9. PMID: 28898698
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Zhang X, Kurimoto A, Frank N, Harbron E. Controlling Photoswitching via pcFRET in Conjugated Polymer Nanoparticles. Journal of Physical Chemistry C. 2018;122:22728–22737.
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Zhang Z, Chen L, Liu L, Su X, Rabinowitz JD. Chemical Basis for Deuterium Labeling of Fat and NADPH. J Am Chem Soc. 2017;139(41):14368–14371. PMID: 28911221
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Zhang X, Chamberlayne C, Kurimoto A, Frank N, Harbron E. Visible light photoswitching of conjugated polymer nanoparticle fluorescence. Chemical Communications. 2016;52:4144–4147.
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Zhang J, Fan J, Venneti S, Cross JR, Takagi T, Bhinder B, Djaballah H, Kanai M, Cheng EH, Judkins AR, Pawel B, Baggs J, Cherry S, Rabinowitz JD, Thompson CB. Asparagine plays a critical role in regulating cellular adaptation to glutamine depletion. Mol Cell. 2014;56(2):205–18.
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Zhao H, Whitfield ML, Xu T, Botstein D, Brooks JD. Diverse effects of methylseleninic acid on the transcriptional program of human prostate cancer cells. Mol Biol Cell. 2004;15(2):506–19.
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Zhao H, Langerød A, Ji Y, Nowels KW, Nesland JM, Tibshirani R, Bukholm IK, Kåresen R, Botstein D, Børresen-Dale A-L, Jeffrey SS. Different gene expression patterns in invasive lobular and ductal carcinomas of the breast. Mol Biol Cell. 2004;15(6):2523–36.
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Zhao S, Jang C, Liu J, Uehara K, Gilbert M, Izzo L, Zeng X, Trefely S, Fernandez S, Carrer A, Miller KD, Schug ZT, Snyder NW, Gade TP, Titchenell PM, Rabinowitz JD, Wellen KE. Dietary fructose feeds hepatic lipogenesis via microbiota-derived acetate. Nature. 2020;579(7800):586–591. PMID: 32214246
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Zhen Y, Aardema ML, Medina EM, Schumer M, Andolfatto P. Parallel molecular evolution in an herbivore community. Science. 2012;337(6102):1634–7.
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Zhen Y, Andolfatto P. Methods to detect selection on noncoding DNA. Methods Mol Biol. 2012;856:141–59.
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Zhou J, Troyanskaya OG. Global quantitative modeling of chromatin factor interactions. PLoS Comput Biol. 2014;10(3):e1003525.
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Zhou J, Theesfeld CL, Yao K, Chen KM, Wong AK, Troyanskaya OG. Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk. Nat Genet. 2018;50(8):1171–1179. PMCID: PMC6094955
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Zhou J, Park CY, Theesfeld CL, Wong AK, Yuan Y, Scheckel C, Fak JJ, Funk J, Yao K, Tajima Y, Packer A, Darnell RB, Troyanskaya OG. Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk. Nat Genet. 2019;51(6):973–980. PMID: 31133750
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Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG. Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development. PLoS Genet. 2019;15(9):e1008382. PMCID: PMC6779412
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Zhou J, Troyanskaya O. An analytical framework for interpretable and generalizable single-cell data analysis. Nature methods. 2021;18(11):1317–1321. PMCID: PMC8959118
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Zhu Q, Wong AK, Krishnan A, Aure MR, Tadych A, Zhang R, Corney DC, Greene CS, Bongo LA, Kristensen VN, Charikar M, Li K, Troyanskaya OG. Targeted exploration and analysis of large cross-platform human transcriptomic compendia. Nat Methods. 2015;12(3):211–4, 3 p following 214.
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Zhu Q, Tekpli X, Troyanskaya OG, Kristensen VN. Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations. Bioinformatics. 2020;36(4):994–999. PMCID: PMC7031777
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Zoller B, Little S, Gregor T. Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting. Cell. 2018;175(3):835–847.e25. PMCID: PMC6779125
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Zong W-X, Rabinowitz JD, White E. Mitochondria and Cancer. Mol Cell. 2016;61(5):667–76.
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Zwarts L, Broeck LV, Cappuyns E, Ayroles J, Magwire MM, Vulsteke V, Clements J, Mackay TFC, Callaerts P. The genetic basis of natural variation in mushroom body size in Drosophila melanogaster. Nat Commun. 2015;6:10115. PMCID: PMC4682101