Publications

50 Publications
Applied Filters: First Letter Of Last Name: T Reset

T

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Tanner LB, Goglia AG, Wei MH, Sehgal T, Parsons LR, Park JO, White E, Toettcher JE, Rabinowitz JD. Four Key Steps Control Glycolytic Flux in Mammalian Cells. Cell Syst. 2018;7(1):49–62.e8. PMCID: PMC6062487
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Teng S-W, Wang Y, Tu KC, Long T, Mehta P, Wingreen NS, Bassler BL, Ong NP. Measurement of the copy number of the master quorum-sensing regulator of a bacterial cell. Biophys J. 2010;98(9):2024–31.
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Teng S-W, Schaffer JN, Tu KC, Mehta P, Lu W, Ong NP, Bassler BL, Wingreen NS. Active regulation of receptor ratios controls integration of quorum-sensing signals in Vibrio harveyi. Mol Syst Biol. 2011;7:491.
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Teng X, Emmett MJ, Lazar MA, Goldberg E, Rabinowitz JD. Lactate Dehydrogenase C Produces S-2-Hydroxyglutarate in Mouse Testis. ACS Chem Biol. 2016;. PMID: 27333189
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Tepper RG, Murphy CT, Bussemaker HJ. DAF-16 and PQM-1: partners in longevity. Aging (Albany NY). 2014;6(1):5–6.
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Tepper RG, Ashraf JM, Kaletsky R, Kleemann G, Murphy CT, Bussemaker HJ. PQM-1 complements DAF-16 as a key transcriptional regulator of DAF-2-mediated development and longevity. Cell. 2013;154(3):676–90.
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Terry LJ, Vastag L, Rabinowitz JD, Shenk T. Human kinome profiling identifies a requirement for AMP-activated protein kinase during human cytomegalovirus infection. Proc Natl Acad Sci U S A. 2012;109(8):3071–6.
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Thutupalli S, Sun M, Bunyak F, Palaniappan K, Shaevitz JW. Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation. J R Soc Interface. 2015;12(109):20150049. PMCID: PMC4535398
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Tikhonov M, Leach RW, Wingreen NS. Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution. ISME J. 2015;9(1):68–80.
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Tilghman SM. Parental imprinting in the mouse. Harvey Lect. 1991;87:69–84.
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Tilghman SM. DNA methylation: a phoenix rises. Proc Natl Acad Sci U S A. 1993;90(19):8761–2.
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Tilghman SM. Twists and turns: a scientific journey. Annu Rev Cell Dev Biol. 2014;30:1–21.
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Tilghman SM. It’s all about the talent. Mol Biol Cell. 2010;21(22):3823.
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Tilghman SM, Bartolomei MS, Webber AL, Brunkow ME, Saam J, Leighton PA, Pfeifer K, Zemel S. Parental imprinting of the H19 and Igf2 genes in the mouse. Cold Spring Harb Symp Quant Biol. 1993;58:287–95.
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Tipping M, Kim Y, Kyriakakis P, Tong M, Shvartsman SY, Veraksa A. β-arrestin Kurtz inhibits MAPK and Toll signalling in Drosophila development. EMBO J. 2010;29(19):3222–35.
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Titchenell PM, Quinn WJ, Lu M, Chu Q, Lu W, Li C, Chen H, Monks BR, Chen J, Rabinowitz JD, Birnbaum MJ. Direct Hepatocyte Insulin Signaling Is Required for Lipogenesis but Is Dispensable for the Suppression of Glucose Production. Cell Metab. 2016;.
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Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ. Searching for collective behavior in a large network of sensory neurons. PLoS Comput Biol. 2014;10(1):e1003408.
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Tkačik G, Gregor T, Bialek W. The role of input noise in transcriptional regulation. PLoS One. 2008;3(7):e2774.
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Tkačik G, Dubuis J, Petkova MD, Gregor T. Positional information, positional error, and readout precision in morphogenesis: a mathematical framework. Genetics. 2015;199(1):39–59.
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Tkačik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. III. A self-interacting gene. Phys Rev E Stat Nonlin Soft Matter Phys. 2012;85(4 Pt 1):041903.
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Tkačik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. Phys Rev E Stat Nonlin Soft Matter Phys. 2009;80(3 Pt 1):031920.
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Tkačik G, Callan CG, Bialek W. Information flow and optimization in transcriptional regulation. Proc Natl Acad Sci U S A. 2008;105(34):12265–70.
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Tkačik G, Callan CG, Bialek W. Information capacity of genetic regulatory elements. Phys Rev E Stat Nonlin Soft Matter Phys. 2008;78(1 Pt 1):011910.
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Tkačik G, Bialek W. Diffusion, dimensionality, and noise in transcriptional regulation. Phys Rev E Stat Nonlin Soft Matter Phys. 2009;79(5 Pt 1):051901.
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Tolwinski NS, Wehrli M, Rives A, Erdeniz N, DiNardo S, Wieschaus E. Wg/Wnt signal can be transmitted through arrow/LRP5,6 and Axin independently of Zw3/Gsk3beta activity. Dev Cell. 2003;4(3):407–18.
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Tolwinski NS, Wieschaus E. Rethinking WNT signaling. Trends Genet. 2004;20(4):177–81.
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Tolwinski NS, Wieschaus E. A nuclear function for armadillo/beta-catenin. PLoS Biol. 2004;2(4):E95.
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Tolwinski NS, Wieschaus E. Armadillo nuclear import is regulated by cytoplasmic anchor Axin and nuclear anchor dTCF/Pan. Development. 2001;128(11):2107–17.
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Tolwinski NS, Wieschaus E. A nuclear escort for beta-catenin. Nat Cell Biol. 2004;6(7):579–80.
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Treen N, Shimobayashi S, Eeftens J, Brangwynne C, Levine M. Properties of repression condensates in living Ciona embryos. Nature communications. 2021;12(1):1561. PMCID: PMC7946874
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Trinklein ND, Murray JI, Hartman SJ, Botstein D, Myers RM. The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response. Mol Biol Cell. 2004;15(3):1254–61.
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Trotter EW, Kao CM-F, Berenfeld L, Botstein D, Petsko GA, Gray J V. Misfolded proteins are competent to mediate a subset of the responses to heat shock in Saccharomyces cerevisiae. J Biol Chem. 2002;277(47):44817–25.
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Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, Tibshirani R, Botstein D, Altman RB. Missing value estimation methods for DNA microarrays. Bioinformatics. 2001;17(6):520–5.
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Troyanskaya OG, Arbell O, Koren Y, Landau GM, Bolshoy A. Sequence complexity profiles of prokaryotic genomic sequences: a fast algorithm for calculating linguistic complexity. Bioinformatics. 2002;18(5):679–88.
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Troyanskaya OG. Putting the ’bio’ into bioinformatics. Genome Biol. 2005;6(10):351.
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Troyanskaya OG, Garber ME, Brown PO, Botstein D, Altman RB. Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics. 2002;18(11):1454–61.
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Troyanskaya OG. Integrated analysis of microarray results. Methods Mol Biol. 2007;382:429–37.
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Troyanskaya OG, Dolinski K, Owen AB, Altman RB, Botstein D. A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc Natl Acad Sci U S A. 2003;100(14):8348–53.
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Troyanskaya O. "Getting started in. ": a series not to miss. PLoS Comput Biol. 2007;3(10):1841.
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Tu I-P, Schaner M, Diehn M, Sikic BI, Brown PO, Botstein D, Fero MJ. A method for detecting and correcting feature misidentification on expression microarrays. BMC Genomics. 2004;5:64.
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Tu KC, Long T, Svenningsen SL, Wingreen NS, Bassler BL. Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response. Mol Cell. 2010;37(4):567–79.
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Tucci S, Akey J. The long walk to African genomics. Genome Biol. 2019;20(1):130. PMCID: PMC6598360
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Tucci S, Vohr SH, McCoy RC, Vernot B, Robinson MR, Barbieri C, Nelson BJ, Fu W, Purnomo GA, Sudoyo H, Eichler EE, Barbujani G, Visscher PM, Akey J, Green RE. Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia. Science. 2018;361(6401):511–516.
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Tyner AL, Godbout R, Compton RS, Tilghman SM. The ontogeny of alpha-fetoprotein gene expression in the mouse gastrointestinal tract. J Cell Biol. 1990;110(4):915–27.