Publications

28 Publications
Applied Filters: First Letter Of Last Name: N Reset

N

1.
Nabieva E, Jim K, Agarwal A, Chazelle B, Singh M. Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinformatics. 2005;21 Suppl 1:i302–10.
1.
Nadimpalli S, Persikov A V, Singh M. Pervasive variation of transcription factor orthologs contributes to regulatory network evolution. PLoS Genet. 2015;11(3):e1005011.
1.
Nair VD, Ge Y, Balasubramaniyan N, Kim J, Okawa Y, Chikina M, Troyanskaya O, Sealfon SC. Involvement of histone demethylase LSD1 in short-time-scale gene expression changes during cell cycle progression in embryonic stem cells. Mol Cell Biol. 2012;32(23):4861–76.
1.
Nara PL, Tobin GJ, Chaudhuri R, Trujillo JD, Lin G, Cho MW, Levin SA, Ndifon W, Wingreen NS. How can vaccines against influenza and other viral diseases be made more effective?. PLoS Biol. 2010;8(12):e1000571.
1.
Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry M. Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Res. 2007;35(Database issue):D468–71.
1.
Navarrete IA, Levine M. Nodal and FGF coordinate ascidian neural tube morphogenesis. Development. 2016;143(24):4665–4675. PMCID: PMC5201037
1.
1.
Neinast MD, Jang C, Hui S, Murashige DS, Chu Q, Morscher RJ, Li X, Zhan L, White E, Anthony T, Rabinowitz JD, Arany Z. Quantitative Analysis of the Whole-Body Metabolic Fate of Branched-Chain Amino Acids. Cell Metab. 2019;29(2):417–429.e4. PMCID: PMC6365191
1.
Nemenman I, Bialek W. Occam factors and model independent Bayesian learning of continuous distributions. Phys Rev E Stat Nonlin Soft Matter Phys. 2002;65(2 Pt 2):026137.
1.
Nemenman I, Lewen GD, Bialek W, van Steveninck RR de R. Neural coding of natural stimuli: information at sub-millisecond resolution. PLoS Comput Biol. 2008;4(3):e1000025.
1.
Nemenman I, Bialek W, van Steveninck R de R. Entropy and information in neural spike trains: progress on the sampling problem. Phys Rev E Stat Nonlin Soft Matter Phys. 2004;69(5 Pt 2):056111.
1.
Neumann S, Vladimirov N, Krembel AK, Wingreen NS, Sourjik V. Imprecision of adaptation in Escherichia coli chemotaxis. PLoS One. 2014;9(1):e84904.
1.
Neumann S, Hansen CH, Wingreen NS, Sourjik V. Differences in signalling by directly and indirectly binding ligands in bacterial chemotaxis. EMBO J. 2010;29(20):3484–95.
1.
Ng W-L, Wei Y, Perez LJ, Cong J, Long T, Koch M, Semmelhack MF, Wingreen NS, Bassler BL. Probing bacterial transmembrane histidine kinase receptor-ligand interactions with natural and synthetic molecules. Proc Natl Acad Sci U S A. 2010;107(12):5575–80.
1.
Nguyen JP, Shipley FB, Linder AN, Plummer GS, Liu M, Setru SU, Shaevitz JW, Leifer AM. Whole-brain calcium imaging with cellular resolution in freely behaving Caenorhabditis elegans. Proc Natl Acad Sci U S A. 2016;113(8):E1074–81. PMCID: PMC4776509
1.
Nguyen JP, Bratton BP, Shaevitz JW. Biophysical Measurements of Bacterial Cell Shape. Methods Mol Biol. 2016;1440:227–45. PMID: 27311676
1.
Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM. Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol. 2017;13(5):e1005517. PMCID: PMC5436637
1.
Nibu Y, Senger K, Levine M. CtBP-independent repression in the Drosophila embryo. Mol Cell Biol. 2003;23(11):3990–9.
1.
Nielsen TO, Hsu FD, O’Connell JX, Gilks B, Sorensen PHB, Linn S, West RB, Liu CL, Botstein D, Brown PO, van de Rijn M. Tissue microarray validation of epidermal growth factor receptor and SALL2 in synovial sarcoma with comparison to tumors of similar histology. Am J Pathol. 2003;163(4):1449–56.
1.
Nielsen TO, West RB, Linn SC, Alter O, Knowling MA, O’Connell JX, Zhu S, Fero M, Sherlock G, Pollack JR, Brown PO, Botstein D, van de Rijn M. Molecular characterisation of soft tissue tumours: a gene expression study. Lancet. 2002;359(9314):1301–7.
1.
Nikolić DL, Boettiger AN, Bar-Sagi D, Carbeck JD, Shvartsman SY. Role of boundary conditions in an experimental model of epithelial wound healing. Am J Physiol Cell Physiol. 2006;291(1):C68–75.
1.
Nirschl CJ, Suárez-Fariñas M, Izar B, Prakadan S, Dannenfelser R, Tirosh I, Liu Y, Zhu Q, Devi SP, Carroll SL, Chau D, Rezaee M, Kim T-G, Huang R, Fuentes-Duculan J, Song-Zhao GX, Gulati N, Lowes MA, King SL, Quintana FJ, Lee Y- suk, Krueger JG, Sarin KY, Yoon CH, Garraway L, Regev A, Shalek AK, Troyanskaya OG, Anandasabapathy N. IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment. Cell. 2017;170(1):127–141.e15. PMCID: PMC5569303
1.
Nofal M, Zhang K, Han S, Rabinowitz JD. mTOR Inhibition Restores Amino Acid Balance in Cells Dependent on Catabolism of Extracellular Protein. Mol Cell. 2017;67(6):936–946.e5. PMCID: PMC5612669
1.
Nofal M, Rabinowitz JD. Ribosomes on the night shift. Science. 2018;360(6390):710–711. PMID: 29773733
1.
Nofal M, Wang T, Yang L, Jankowski C, Li S, Han S, Parsons L, Frese A, Gitai Z, Anthony T, Wühr M, Sabatini D, Rabinowitz J. GCN2 adapts protein synthesis to scavenging-dependent growth. Cell systems. 2022;13(2):158–172.e9. PMCID: PMC8961722
1.
Novoradovskaya N, Whitfield ML, Basehore LS, Novoradovsky A, Pesich R, Usary J, Karaca M, Wong WK, Aprelikova O, Fero M, Perou CM, Botstein D, Braman J. Universal Reference RNA as a standard for microarray experiments. BMC Genomics. 2004;5(1):20.
1.
Nusslein-Volhard C, Wieschaus E. Mutations affecting segment number and polarity in Drosophila. Nature. 1980;287(5785):795–801.
1.
Nuttle X, Giannuzzi G, Duyzend MH, Schraiber JG, Narvaiza I, Sudmant PH, Penn O, Chiatante G, Malig M, Huddleston J, Benner C, Camponeschi F, Ciofi-Baffoni S, Stessman HAF, Marchetto MCN, Denman L, Harshman L, Baker C, Raja A, Penewit K, Janke N, Tang J, Ventura M, Banci L, Antonacci F, Akey J, Amemiya CT, Gage FH, Reymond A, Eichler EE. Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility. Nature. 2016;536(7615):205–9. PMCID: PMC4988886