Publications

89 Publications
Applied Filters: First Letter Of Last Name: M Reset

M

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Mackay TFC, Stone EA, Ayroles J. The genetics of quantitative traits: challenges and prospects. Nat Rev Genet. 2009;10(8):565–77.
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Mackay TFC, Richards S, Stone EA, Barbadilla A, Ayroles J, Zhu D, Casillas S, Han Y, Magwire MM, Cridland J, Richardson MF, Anholt R, Barrón M, Bess C, Blankenburg K, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu L-L, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu Y-Q, Yamamoto A, Zhu Y, Bergman C, Thornton KR, Mittelman D, Gibbs RA. The Drosophila melanogaster Genetic Reference Panel. Nature. 2012;482(7384):173–8.
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Mancini-Dinardo D, Steele SJS, Levorse JM, Ingram RS, Tilghman SM. Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes. Genes Dev. 2006;20(10):1268–82.
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Mancini-Dinardo D, Steele SJS, Ingram RS, Tilghman SM. A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer. Hum Mol Genet. 2003;12(3):283–94.
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Markowetz F, Kostka D, Troyanskaya OG, Spang R. Nested effects models for high-dimensional phenotyping screens. Bioinformatics. 2007;23(13):i305–12.
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Markowetz F, Mulder KW, Airoldi EM, Lemischka IR, Troyanskaya OG. Mapping dynamic histone acetylation patterns to gene expression in nanog-depleted murine embryonic stem cells. PLoS Comput Biol. 2010;6(12):e1001034.
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Markowetz F, Troyanskaya OG. Computational identification of cellular networks and pathways. Mol Biosyst. 2007;3(7):478–82.
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Markstein M, Zinzen R, Markstein P, Yee K-P, Erives A, Stathopoulos A, Levine M. A regulatory code for neurogenic gene expression in the Drosophila embryo. Development. 2004;131(10):2387–94.
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Markstein M, Markstein P, Markstein V, Levine MS. Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo. Proc Natl Acad Sci U S A. 2002;99(2):763–8.
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Markstein M, Levine M. Decoding cis-regulatory DNAs in the Drosophila genome. Curr Opin Genet Dev. 2002;12(5):601–6.
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Marmion R, Yang L, Goyal Y, Jindal G, Wetzel J, Singh M, Schüpbach T, Shvartsman S. Molecular mechanisms underlying cellular effects of human MEK1 mutations. Molecular biology of the cell. 2021;32(9):974–983. PMCID: PMC8108529
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Marsh JL, Wieschaus E. Is sex determination in germ line and soma controlled by separate genetic mechanisms?. Nature. 1978;272(5650):249–51.
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Marsh JL, Wieschaus E. Germ-line dependence of the maroon-like maternal effect in Drosophila. Dev Biol. 1977;60(2):396–403.
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Marsh JL, van Deusen EB, Wieschaus E, Gehring WJ. Germ line dependence of the deep orange maternal effect in Drosophila. Dev Biol. 1977;56(1):195–9.
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Marstrand TT, Storey JD. Identifying and mapping cell-type-specific chromatin programming of gene expression. Proc Natl Acad Sci U S A. 2014;111(6):E645–54.
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Martin AC, Wieschaus EF. Tensions divide. Nat Cell Biol. 2010;12(1):5–7.
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Martin AC, Kaschube M, Wieschaus EF. Pulsed contractions of an actin-myosin network drive apical constriction. Nature. 2009;457(7228):495–9.
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Martin AC, Gelbart M, Fernandez-Gonzalez R, Kaschube M, Wieschaus EF. Integration of contractile forces during tissue invagination. J Cell Biol. 2010;188(5):735–49.
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Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles J, Dermitzakis ET, Stone EA, Jensen JD, Mackay TFC, Deplancke B. Genomic variation and its impact on gene expression in Drosophila melanogaster. PLoS Genet. 2012;8(11):e1003055.
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Mathew R, Khor S, Hackett SR, Rabinowitz JD, Perlman DH, White E. Functional role of autophagy-mediated proteome remodeling in cell survival signaling and innate immunity. Mol Cell. 2014;55(6):916–30.
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McAllister SR, Feng X-J, DiMaggio PA, Floudas CA, Rabinowitz JD, Rabitz H. Descriptor-free molecular discovery in large libraries by adaptive substituent reordering. Bioorg Med Chem Lett. 2008;18(22):5967–70.
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McCarroll SA, Murphy CT, Zou S, Pletcher SD, Chin C-S, Jan YN, Kenyon C, Bargmann CI, Li H. Comparing genomic expression patterns across species identifies shared transcriptional profile in aging. Nat Genet. 2004;36(2):197–204.
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McIsaac S, Petti AA, Bussemaker HJ, Botstein D. Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway. Mol Biol Cell. 2012;23(15):2993–3007.
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McIsaac S, Silverman SJ, McClean MN, Gibney PA, Macinskas J, Hickman MJ, Petti AA, Botstein D. Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae. Mol Biol Cell. 2011;22(22):4447–59.
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McIsaac S, Huang KC, Sengupta A, Wingreen NS. Does the potential for chaos constrain the embryonic cell-cycle oscillator?. PLoS Comput Biol. 2011;7(7):e1002109.
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McIsaac S, Silverman SJ, Parsons L, Xu P, Briehof R, McClean MN, Botstein D. Visualization and analysis of mRNA molecules using fluorescence in situ hybridization in Saccharomyces cerevisiae. J Vis Exp. 2013;(76):e50382.
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McIsaac S, Oakes BL, Wang X, Dummit KA, Botstein D, Noyes MB. Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast. Nucleic Acids Res. 2013;41(4):e57.
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McIsaac S, Gibney PA, Chandran SS, Benjamin KR, Botstein D. Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae. Nucleic Acids Res. 2014;42(6):e48.
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McIsaac S, Oakes BL, Botstein D, Noyes MB. Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters. J Vis Exp. 2013;(81):e51153.
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McKee SE, Zhang S, Chen L, Rabinowitz JD, Reyes TM. Perinatal high fat diet and early life methyl donor supplementation alter one carbon metabolism and DNA methylation in the brain. J Neurochem. 2018;145(5):362–373. PMCID: PMC6288810
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Mehta P, Goyal S, Wingreen NS. A quantitative comparison of sRNA-based and protein-based gene regulation. Mol Syst Biol. 2008;4:221.
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Mehta P, Goyal S, Long T, Bassler BL, Wingreen NS. Information processing and signal integration in bacterial quorum sensing. Mol Syst Biol. 2009;5:325.
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Mehta P, Mukhopadhyay R, Wingreen NS. Exponential sensitivity of noise-driven switching in genetic networks. Phys Biol. 2008;5(2):026005.
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Mehta P, Gregor T. Approaching the molecular origins of collective dynamics in oscillating cell populations. Curr Opin Genet Dev. 2010;20(6):574–80.
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Meir Y, Jakovljevic V, Oleksiuk O, Sourjik V, Wingreen NS. Precision and kinetics of adaptation in bacterial chemotaxis. Biophys J. 2010;99(9):2766–74.
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Meir Y, Hirose K, Wingreen NS. Kondo model for the "0.7 anomaly" in transport through a quantum point contact. Phys Rev Lett. 2002;89(19):196802.
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Melamud E, Vastag L, Rabinowitz JD. Metabolomic analysis and visualization engine for LC-MS data. Anal Chem. 2010;82(23):9818–26.
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Menon R, Otto EA, Kokoruda A, Zhou J, Zhang Z, Yoon E, Chen Y-C, Troyanskaya O, Spence JR, Kretzler M, Cebrián C. Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney. Development. 2018;145(16). PMCID: PMC6124540
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Menon R, Otto EA, Hoover P, Eddy S, Mariani L, Godfrey B, Berthier CC, Eichinger F, Subramanian L, Harder J, Ju W, Nair V, Larkina M, Naik AS, Luo J, Jain S, Sealfon R, Troyanskaya O, Hacohen N, Hodgin JB, Kretzler M, Kpmp KPMP, Network NSS. Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker. JCI Insight. 2020;5(6). PMID: 32107344
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Merrill PT, Sweeton D, Wieschaus E. Requirements for autosomal gene activity during precellular stages of Drosophila melanogaster. Development. 1988;104(3):495–509.
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Metallinos DL, Oppenheimer AJ, Rinchik EM, Russell LB, Dietrich W, Tilghman SM. Fine structure mapping and deletion analysis of the murine piebald locus. Genetics. 1994;136(1):217–23.
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Mignot T, Shaevitz JW, Hartzell PL, Zusman DR. Evidence that focal adhesion complexes power bacterial gliding motility. Science. 2007;315(5813):853–6.
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Mignot T, Shaevitz JW. Active and passive mechanisms of intracellular transport and localization in bacteria. Curr Opin Microbiol. 2008;11(6):580–5.
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Miller J, Zeng C, Wingreen NS, Tang C. Emergence of highly designable protein-backbone conformations in an off-lattice model. Proteins. 2002;47(4):506–12.
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Miller RA, Shi Y, Lu W, Pirman DA, Jatkar A, Blatnik M, Wu H, Cárdenas C, Wan M, Foskett K, Park JO, Zhang Y, Holland WL, Rabinowitz JD, Birnbaum MJ. Targeting hepatic glutaminase activity to ameliorate hyperglycemia. Nat Med. 2018;24(4):518–524. PMCID: PMC6089616
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Millonig JH, Emerson JA, Levorse JM, Tilghman SM. Molecular analysis of the distal enhancer of the mouse alpha-fetoprotein gene. Mol Cell Biol. 1995;15(7):3848–56.
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Minhas PS, Liu L, Moon PK, Joshi AU, Dove C, Mhatre S, Contrepois K, Wang Q, Lee BA, Coronado M, Bernstein D, Snyder MP, Migaud M, Majeti R, Mochly-Rosen D, Rabinowitz JD, Andreasson KI. Macrophage de novo NAD synthesis specifies immune function in aging and inflammation. Nat Immunol. 2019;20(1):50–63. PMID: 30478397
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Mohler J, Wieschaus EF. Bicaudal mutations of Drosophila melanogaster: alteration of blastoderm cell fate. Cold Spring Harb Symp Quant Biol. 1985;50:105–11.