Publications

23 Publications
Applied Filters: First Letter Of Last Name: E Reset

E

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Edwards AC, Ayroles J, Stone EA, Carbone MA, Lyman RF, Mackay TFC. A transcriptional network associated with natural variation in Drosophila aggressive behavior. Genome Biol. 2009;10(7):R76.
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Emberly E, Wingreen NS. Hourglass model for a protein-based circadian oscillator. Phys Rev Lett. 2006;96(3):038303.
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Emberly EG, Miller J, Zeng C, Wingreen NS, Tang C. Identifying proteins of high designability via surface-exposure patterns. Proteins. 2002;47(3):295–304.
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Emberly EG, Mukhopadhyay R, Tang C, Wingreen NS. Flexibility of beta-sheets: principal component analysis of database protein structures. Proteins. 2004;55(1):91–8.
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Emberly EG, Mukhopadhyay R, Wingreen NS, Tang C. Flexibility of alpha-helices: results of a statistical analysis of database protein structures. J Mol Biol. 2003;327(1):229–37.
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Emberly EG, Wingreen NS, Tang C. Designability of alpha-helical proteins. Proc Natl Acad Sci U S A. 2002;99(17):11163–8.
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Emerson JA, Vacher J, Cirillo LA, Tilghman SM, Tyner AL. The zonal expression of alpha-fetoprotein transgenes in the livers of adult mice. Dev Dyn. 1992;195(1):55–66.
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Endres RG, Wingreen NS. Weight matrices for protein-DNA binding sites from a single co-crystal structure. Phys Rev E Stat Nonlin Soft Matter Phys. 2006;73(6 Pt 1):061921.
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Endres RG, Oleksiuk O, Hansen CH, Meir Y, Sourjik V, Wingreen NS. Variable sizes of Escherichia coli chemoreceptor signaling teams. Mol Syst Biol. 2008;4:211.
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Endres RG, Schulthess TC, Wingreen NS. Toward an atomistic model for predicting transcription-factor binding sites. Proteins. 2004;57(2):262–8.
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Endres RG, Wingreen NS. Precise adaptation in bacterial chemotaxis through "assistance neighborhoods". Proc Natl Acad Sci U S A. 2006;103(35):13040–4.
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Endres RG, Wingreen NS. Maximum likelihood and the single receptor. Phys Rev Lett. 2009;103(15):158101.
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Endres RG, Falke JJ, Wingreen NS. Chemotaxis receptor complexes: from signaling to assembly. PLoS Comput Biol. 2007;3(7):e150.
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Endres RG, Wingreen NS. Accuracy of direct gradient sensing by single cells. Proc Natl Acad Sci U S A. 2008;105(41):15749–54.
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Endres RG, Wingreen NS. Accuracy of direct gradient sensing by cell-surface receptors. Prog Biophys Mol Biol. 2009;100(1-3):33–9.
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Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry M. Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res. 2010;38(Database issue):D433–6.
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Engel P, Kwong WK, McFrederick Q, Anderson KE, Barribeau SM, Chandler JA, Cornman S, Dainat J, de Miranda JR, Doublet V, Emery O, Evans JD, Farinelli L, Flenniken ML, Granberg F, Grasis JA, Gauthier L, Hayer J, Koch H, Kocher S, Martinson VG, Moran N, Munoz-Torres M, Newton I, Paxton RJ, Powell E, Sadd BM, Schmid-Hempel P, Schmid-Hempel R, Song SJ, Schwarz RS, vanEngelsdorp D, Dainat B. The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions. MBio. 2016;7(2):e02164–15. PMCID: PMC4850275
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Erives A, Levine M. Coordinate enhancers share common organizational features in the Drosophila genome. Proc Natl Acad Sci U S A. 2004;101(11):3851–6.
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Esposito E, Lim B, Guessous G, Falahati H, Levine M. Mitosis-associated repression in development. Genes Dev. 2016;30(13):1503–8. PMCID: PMC4949323
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Estrella MA, Du J, Chen L, Rath S, Prangley E, Chitrakar A, Aoki T, Schedl P, Rabinowitz J, Korennykh A. The metabolites NADP and NADPH are the targets of the circadian protein Nocturnin (Curled). Nat Commun. 2019;10(1):2367. PMCID: PMC6542800
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Etzion-Fuchs A, Todd D, Singh M. dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains. Nucleic acids research. 2021;49(13):e78. PMCID: PMC8287948
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Ewald CY, Landis JN, Abate JP, Murphy CT, Blackwell K. Dauer-independent insulin/IGF-1-signalling implicates collagen remodelling in longevity. Nature. 2015;519(7541):97–101. PMCID: PMC4352135