Publications Search Advanced Filters Type - Any -Journal Article Year - Any -2022202120202019201820172016201520142013201220112010200920082007200620052004200320022001200019991998199719961995199419931992199119901989198819871986198519841982198119801979197819771976 AuthorTitleTypeYear #ABCDEFGHIJKLMNOPQRSTUVWXYZ 82 Publications Applied Filters: First Letter Of Last Name: C Reset C 1.Calhoun VC, Stathopoulos A, Levine M. Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex. Proc Natl Acad Sci U S A. 2002;99(14):9243–7. 1.Calhoun VC, Levine M. Long-range enhancer-promoter interactions in the Scr-Antp interval of the Drosophila Antennapedia complex. Proc Natl Acad Sci U S A. 2003;100(17):9878–83. 1.Calhoun VC, Levine M. Coordinate regulation of an extended chromosome domain. Cell. 2003;113(3):278–80. 1.Callahan B, Neher RA, Bachtrog D, Andolfatto P, Shraiman BI. Correlated evolution of nearby residues in Drosophilid proteins. PLoS Genet. 2011;7(2):e1001315. 1.Camper SA, Tilghman SM. Postnatal repression of the alpha-fetoprotein gene is enhancer independent. Genes Dev. 1989;3(4):537–46. 1.Cande JD, Chopra VS, Levine M. Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum. Development. 2009;136(18):3153–60. 1.Cande JD, Andolfatto P, Prud’homme B, Stern DL, Gompel N. Evolution of multiple additive loci caused divergence between Drosophila yakuba and D. santomea in wing rowing during male courtship. PLoS One. 2012;7(8):e43888. 1.Cande JD, Goltsev Y, Levine MS. Conservation of enhancer location in divergent insects. Proc Natl Acad Sci U S A. 2009;106(34):14414–9. 1.Cao C, Lemaire LA, Wang W, Yoon PH, Choi YA, Parsons LR, Matese JC, Wang W, Levine M, Chen K. Comprehensive single-cell transcriptome lineages of a proto-vertebrate. Nature. 2019;571(7765):349–354. PMID: 31292549 1.Capra JA, Laskowski RA, Thornton JM, Singh M, Funkhouser TA. Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure. PLoS Comput Biol. 2009;5(12):e1000585. 1.Capra JA, Singh M. Predicting functionally important residues from sequence conservation. Bioinformatics. 2007;23(15):1875–82. 1.Capra JA, Paeschke K, Singh M, Zakian VA. G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae. PLoS Comput Biol. 2010;6(7):e1000861. 1.Capra JA, Singh M. Characterization and prediction of residues determining protein functional specificity. Bioinformatics. 2008;24(13):1473–80. 1.Carbone MA, Ayroles J, Yamamoto A, Morozova T V, West SA, Magwire MM, Mackay TFC, Anholt R. Overexpression of myocilin in the Drosophila eye activates the unfolded protein response: implications for glaucoma. PLoS One. 2009;4(1):e4216. 1.Caspary T, Cleary MA, Perlman EJ, Zhang P, Elledge SJ, Tilghman SM. Oppositely imprinted genes p57(Kip2) and igf2 interact in a mouse model for Beckwith-Wiedemann syndrome. Genes Dev. 1999;13(23):3115–24. 1.Caspary T, Cleary MA, Baker CC, Guan XJ, Tilghman SM. Multiple mechanisms regulate imprinting of the mouse distal chromosome 7 gene cluster. Mol Cell Biol. 1998;18(6):3466–74. 1.Castellana M, Bialek W. Inverse spin glass and related maximum entropy problems. Phys Rev Lett. 2014;113(11):117204. 1.Castellana M, Wilson MZ, Xu Y, Joshi P, Cristea IM, Rabinowitz JD, Gitai Z, Wingreen NS. Enzyme clustering accelerates processing of intermediates through metabolic channeling. Nat Biotechnol. 2014;32(10):1011–8. 1.Caudy AA, Guan Y, Jia Y, Hansen C, DeSevo C, Hayes AP, Agee J, Alvarez-Dominguez JR, Arellano H, Barrett DR, Bauerle C, Bisaria N, Bradley PH, Breunig S, Bush E, Cappel D, Capra E, Chen W, Clore J, Combs PA, Doucette CD, Demuren O, Fellowes P, Freeman S, Frenkel E, Gadala-Maria D, Gawande R, Glass D, Grossberg S, Gupta A, Hammonds-Odie L, Hoisos A, Hsi J, Hsu Y-HH, Inukai S, Karczewski KJ, Ke X, Kojima M, Leachman S, Lieber D, Liebowitz A, Liu J, Liu Y, Martin T, Mena J, Mendoza R, Myhrvold C, Millian C, Pfau S, Raj S, Rich M, Rokicki J, Rounds W, Salazar M, Salesi M, Sharma R, Silverman S, Singer C, Sinha S, Staller M, Stern P, Tang H, Weeks S, Weidmann M, Wolf A, Young C, Yuan J, Crutchfield CA, McClean M, Murphy CT, Llinás M, Botstein D, Troyanskaya OG, Dunham M. A new system for comparative functional genomics of Saccharomyces yeasts. Genetics. 2013;195(1):275–87. 1.Chacha P, Horie R, Kusakabe T, Sasakura Y, Singh M, Horie T, Levine M. Neuronal identities derived by misexpression of the POU IV sensory determinant in a protovertebrate. Proceedings of the National Academy of Sciences of the United States of America. 2022;119(4). PMCID: PMC8794889 1.Chan M, Smith Z, Grosswendt S, Kretzmer H, Norman T, Adamson B, Jost M, Quinn J, Yang D, Jones M, Khodaverdian A, Yosef N, Meissner A, Weissman J. Molecular recording of mammalian embryogenesis. Nature. 2019;570(7759):77–82. PMCID: PMC7229772 1.Chang HY, Sneddon JB, Alizadeh AA, Sood R, West RB, Montgomery K, Chi J-T, van de Rijn M, Botstein D, Brown PO. Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds. PLoS Biol. 2004;2(2):E7. 1.Chang HY, Chi J-T, Dudoit S, Bondre C, van de Rijn M, Botstein D, Brown PO. Diversity, topographic differentiation, and positional memory in human fibroblasts. Proc Natl Acad Sci U S A. 2002;99(20):12877–82. 1.Chen LS, Storey JD. Eigen-R2 for dissecting variation in high-dimensional studies. Bioinformatics. 2008;24(19):2260–2. 1.Chen L, Ducker GS, Lu W, Teng X, Rabinowitz JD. An LC-MS chemical derivatization method for the measurement of five different one-carbon states of cellular tetrahydrofolate. Anal Bioanal Chem. 2017;. PMID: 28799108 1.Chen L, Zhang Z, Hoshino A, Zheng HD, Morley M, Arany Z, Rabinowitz JD. NADPH production by the oxidative pentose-phosphate pathway supports folate metabolism. Nat Metab. 2019;1:404–415. PMCID: PMC6489125 1.Chen KM, Cofer EM, Zhou J, Troyanskaya OG. Selene: a PyTorch-based deep learning library for sequence data. Nat Methods. 2019;16(4):315–318. PMID: 30923381 1.Chen X, Leung SY, Yuen ST, Chu K-M, Ji J, Li R, S Y Chan A, Law S, Troyanskaya OG, Wong J, So S, Botstein D, Brown PO. Variation in gene expression patterns in human gastric cancers. Mol Biol Cell. 2003;14(8):3208–15. 1.Chen X, Cheung ST, So S, Fan ST, Barry C, Higgins J, Lai K-M, Ji J, Dudoit S, Ng IOL, van de Rijn M, Botstein D, Brown PO. Gene expression patterns in human liver cancers. Mol Biol Cell. 2002;13(6):1929–39. 1.Chen L, Wolf A, Fu W, Li L, Akey J. Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals. Cell. 2020;180(4):677–687.e16. PMID: 32004458 1.Chen H, Levo M, Barinov L, Fujioka M, Jaynes J, Gregor T. Dynamic interplay between enhancer-promoter topology and gene activity. Nature genetics. 2018;50(9):1296–1303. PMCID: PMC6119122 1.Chen L, Lu W, Wang L, Xing X, Chen Z, Teng X, Zeng X, Muscarella A, Shen Y, Cowan AJ, McReynolds M, Kennedy B, Lato A, Campagna S, Singh M, Rabinowitz J. Metabolite discovery through global annotation of untargeted metabolomics data. Nature methods. 2021;18(11):1377–1385. PMCID: PMC8733904 1.Cheung LS, Schüpbach T, Shvartsman SY. Pattern formation by receptor tyrosine kinases: analysis of the Gurken gradient in Drosophila oogenesis. Curr Opin Genet Dev. 2011;21(6):719–25. 1.Cheung LS, Simakov DSA, Fuchs A, Pyrowolakis G, Shvartsman SY. Dynamic model for the coordination of two enhancers of broad by EGFR signaling. Proc Natl Acad Sci U S A. 2013;110(44):17939–44. 1.Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JEP, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc Natl Acad Sci U S A. 2007;104(7):2193–8. 1.Chi J-T, Chang HY, Haraldsen G, Jahnsen FL, Troyanskaya OG, Chang DS, Wang Z, Rockson SG, van de Rijn M, Botstein D, Brown PO. Endothelial cell diversity revealed by global expression profiling. Proc Natl Acad Sci U S A. 2003;100(19):10623–8. 1.Chikina MD, Troyanskaya OG. Accurate quantification of functional analogy among close homologs. PLoS Comput Biol. 2011;7(2):e1001074. 1.Chikina MD, Gerald CP, Li X, Ge Y, Pincas H, Nair VD, Wong AK, Krishnan A, Troyanskaya OG, Raymond D, Saunders-Pullman R, Bressman SB, Yue Z, Sealfon SC. Low-variance RNAs identify Parkinson’s disease molecular signature in blood. Mov Disord. 2015;30(6):813–21. 1.Chikina MD, Huttenhower C, Murphy CT, Troyanskaya OG. Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans. PLoS Comput Biol. 2009;5(6):e1000417. 1.Chikina MD, Troyanskaya OG. An effective statistical evaluation of ChIPseq dataset similarity. Bioinformatics. 2012;28(5):607–13. 1.Choi J, Rajagopal A, Xu Y-F, Rabinowitz JD, O’Shea EK. A systematic genetic screen for genes involved in sensing inorganic phosphate availability in Saccharomyces cerevisiae. PLoS One. 2017;12(5):e0176085. PMCID: PMC5435139 1.Chopra VS, Kong N, Levine M. Transcriptional repression via antilooping in the Drosophila embryo. Proc Natl Acad Sci U S A. 2012;109(24):9460–4. 1.Chopra VS, Cande JD, Hong J-W, Levine M. Stalled Hox promoters as chromosomal boundaries. Genes Dev. 2009;23(13):1505–9. 1.Chopra VS, Hong J-W, Levine M. Regulation of Hox gene activity by transcriptional elongation in Drosophila. Curr Biol. 2009;19(8):688–93. 1.Chopra VS, Hendrix DA, Core LJ, Tsui C, Lis JT, Levine M. The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo. Mol Cell. 2011;42(6):837–44. 1.Chou D, Adamson B, Dephoure N, Tan X, Nottke A, Hurov K, Gygi S, Colaiácovo M, Elledge S. A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage. Proceedings of the National Academy of Sciences of the United States of America. 2010;107(43):18475–80. PMCID: PMC2972950 1.Christiaen L, Wagner E, Shi W, Levine M. X-gal staining of electroporated sea squirt (Ciona) embryos. Cold Spring Harb Protoc. 2009;2009(12):pdb.prot5346. 1.Christiaen L, Wagner E, Shi W, Levine M. Whole-mount in situ hybridization on sea squirt (Ciona intestinalis) embryos. Cold Spring Harb Protoc. 2009;2009(12):pdb.prot5348. 1.Christiaen L, Davidson B, Kawashima T, Powell W, Nolla H, Vranizan K, Levine M. The transcription/migration interface in heart precursors of Ciona intestinalis. Science. 2008;320(5881):1349–52. 1.Christiaen L, Stolfi A, Davidson B, Levine M. Spatio-temporal intersection of Lhx3 and Tbx6 defines the cardiac field through synergistic activation of Mesp. Dev Biol. 2009;328(2):552–60. Pagination Current page 1 Page 2 Next page Next › Last page Last »