Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast. Author Scott McIsaac, Benjamin Oakes, Xin Wang, Krysta Dummit, David Botstein, Marcus Noyes Publication Year 2013 Type Journal Article Abstract A general method for the dynamic control of single gene expression in eukaryotes, with no off-target effects, is a long-sought tool for molecular and systems biologists. We engineered two artificial transcription factors (ATFs) that contain Cys(2)His(2) zinc-finger DNA-binding domains of either the mouse transcription factor Zif268 (9 bp of specificity) or a rationally designed array of four zinc fingers (12 bp of specificity). These domains were expressed as fusions to the human estrogen receptor and VP16 activation domain. The ATFs can rapidly induce a single gene driven by a synthetic promoter in response to introduction of an otherwise inert hormone with no detectable off-target effects. In the absence of inducer, the synthetic promoter is inactive and the regulated gene product is not detected. Following addition of inducer, transcripts are induced >50-fold within 15 min. We present a quantitative characterization of these ATFs and provide constructs for making their implementation straightforward. These new tools allow for the elucidation of regulatory network elements dynamically, which we demonstrate with a major metabolic regulator, Gcn4p. Keywords Animals, Gene Expression Regulation, Mice, Transcription, Genetic, Humans, Saccharomyces cerevisiae, Cell Proliferation, Gene Regulatory Networks, Recombinant Fusion Proteins, Binding Sites, Protein Structure, Tertiary, Saccharomyces cerevisiae Proteins, Early Growth Response Protein 1, Basic-Leucine Zipper Transcription Factors, Estradiol, Genetic Engineering, Genome, Fungal, Herpes Simplex Virus Protein Vmw65, Receptors, Estrogen, Zinc Fingers Journal Nucleic Acids Res Volume 41 Issue 4 Pages e57 Date Published 02/2013 Alternate Journal Nucleic Acids Res. Google ScholarBibTeXEndNote X3 XML