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  • Shaevitz, Joshua W, Joanna Y Lee, and Daniel A Fletcher. (2005) 2005. “Spiroplasma Swim by a Processive Change in Body Helicity.”. Cell 122 (6): 941-5.
    Reference Link
  • Stephens, Greg J, Matthew Bueno de Mesquita, William S Ryu, and William Bialek. (2011) 2011. “Emergence of Long Timescales and Stereotyped Behaviors in Caenorhabditis Elegans.”. Proc Natl Acad Sci U S A 108 (18): 7286-9.
    Reference Link
  • Bothma, Jacques P, Joe Magliocco, and Michael Levine. (2011) 2011. “The Snail Repressor Inhibits Release, Not Elongation, of Paused Pol II in the Drosophila Embryo.”. Curr Biol 21 (18): 1571-7.
    Reference Link
  • Gross, S P, M A Welte, S M Block, and E F Wieschaus. (2000) 2000. “Dynein-Mediated Cargo Transport in Vivo. A Switch Controls Travel Distance.”. J Cell Biol 148 (5): 945-56.
    Reference Link
  • Rosenbluth, Michael J, Ailey Crow, Joshua W Shaevitz, and Daniel A Fletcher. (2008) 2008. “Slow Stress Propagation in Adherent Cells.”. Biophys J 95 (12): 6052-9.
    Reference Link
  • Wang, Yu-Chiun, Zia Khan, and Eric F Wieschaus. (2013) 2013. “Distinct Rap1 Activity States Control the Extent of Epithelial Invagination via α-Catenin.”. Dev Cell 25 (3): 299-309.
    Reference Link
  • Troyanskaya, Olga G, Ora Arbell, Yair Koren, Gad M Landau, and Alexander Bolshoy. (2002) 2002. “Sequence Complexity Profiles of Prokaryotic Genomic Sequences: A Fast Algorithm for Calculating Linguistic Complexity.”. Bioinformatics 18 (5): 679-88.
    Reference Link
  • Putnam, Andrea S, Mark Scriber, and Peter Andolfatto. (2007) 2007. “Discordant Divergence Times Among Z-Chromosome Regions Between Two Ecologically Distinct Swallowtail Butterfly Species.”. Evolution 61 (4): 912-27.
    Reference Link
  • Osborne, Leslie C, Stephen G Lisberger, and William Bialek. (2005) 2005. “A Sensory Source for Motor Variation.”. Nature 437 (7057): 412-6.
    Reference Link
  • Yuan, Jie, and Joshua D Rabinowitz. (2007) 2007. “Differentiating Metabolites Formed from De Novo Synthesis Versus Macromolecule Decomposition.”. J Am Chem Soc 129 (30): 9294-5.
    Reference Link
  • Berezhkovskii, Alexander M, and Stanislav Y Shvartsman. (2011) 2011. “Physical Interpretation of Mean Local Accumulation Time of Morphogen Gradient Formation.”. J Chem Phys 135 (15): 154115.
    Reference Link
  • McCarroll, Steven A, Coleen T Murphy, Sige Zou, Scott D Pletcher, Chen-Shan Chin, Yuh Nung Jan, Cynthia Kenyon, Cornelia I Bargmann, and Hao Li. (2004) 2004. “Comparing Genomic Expression Patterns across Species Identifies Shared Transcriptional Profile in Aging.”. Nat Genet 36 (2): 197-204.
    Reference Link
  • Lang, Gregory I, Daniel P Rice, Mark J Hickman, Erica Sodergren, George M Weinstock, David Botstein, and Michael M Desai. (2013) 2013. “Pervasive Genetic Hitchhiking and Clonal Interference in Forty Evolving Yeast Populations.”. Nature 500 (7464): 571-4.
    Reference Link
  • Slotte, Tanja, Khaled M Hazzouri, Arvid Ågren, Daniel Koenig, Florian Maumus, Ya-Long Guo, Kim Steige, et al. (2013) 2013. “The Capsella Rubella Genome and the Genomic Consequences of Rapid Mating System Evolution.”. Nat Genet 45 (7): 831-5.
    Reference Link
  • Kanodia, Jitendra S, Hsiao-Lan Liang, Yoosik Kim, Bomyi Lim, Mei Zhan, Hang Lu, Christine A Rushlow, and Stanislav Y Shvartsman. (2012) 2012. “Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo.”. Biophys J 102 (3): 427-33.
    Reference Link
  • Schejter, E D, and E Wieschaus. (1993) 1993. “Bottleneck Acts As a Regulator of the Microfilament Network Governing Cellularization of the Drosophila Embryo.”. Cell 75 (2): 373-85.
    Reference Link
  • Teng, Shu-Wen, Yufang Wang, Kimberly C Tu, Tao Long, Pankaj Mehta, Ned S Wingreen, Bonnie L Bassler, and N P Ong. (2010) 2010. “Measurement of the Copy Number of the Master Quorum-Sensing Regulator of a Bacterial Cell.”. Biophys J 98 (9): 2024-31.
    Reference Link
  • Smith, Kevin S, Sumit K Chanda, Merel Lingbeek, Douglas T Ross, David Botstein, Maarten van Lohuizen, and Michael L Cleary. (2003) 2003. “Bmi-1 Regulation of INK4A-ARF Is a Downstream Requirement for Transformation of Hematopoietic Progenitors by E2a-Pbx1.”. Mol Cell 12 (2): 393-400.
    Reference Link
  • Drocco, Jeffrey A, Oliver Grimm, David W Tank, and Eric Wieschaus. (2011) 2011. “Measurement and Perturbation of Morphogen Lifetime: Effects on Gradient Shape.”. Biophys J 101 (8): 1807-15.
    Reference Link
  • Nofal, Michel, Kevin Zhang, Seunghun Han, and Joshua D Rabinowitz. (2017) 2017. “MTOR Inhibition Restores Amino Acid Balance in Cells Dependent on Catabolism of Extracellular Protein.”. Mol Cell 67 (6): 936-946.e5. doi:10.1016/j.molcel.2017.08.011.
    Reference Link
  • Monine, Michael I, Alexander M Berezhkovskii, Elizabeth J Joslin, Steven Wiley, Douglas A Lauffenburger, and Stanislav Y Shvartsman. (2005) 2005. “Ligand Accumulation in Autocrine Cell Cultures.”. Biophys J 88 (4): 2384-90.
    Reference Link
  • Nuttle, Xander, Giuliana Giannuzzi, Michael H Duyzend, Joshua G Schraiber, Iñigo Narvaiza, Peter H Sudmant, Osnat Penn, et al. (2016) 2016. “Emergence of a Homo Sapiens-Specific Gene Family and Chromosome 16p11.2 CNV Susceptibility.”. Nature 536 (7615): 205-9. doi:10.1038/nature19075.
    Reference Link
  • Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Transitions in the Model of Epithelial Patterning.”. Dev Dyn 226 (1): 155-9.
    Reference Link
  • Yuan, Jie, William U Fowler, Elizabeth Kimball, Wenyun Lu, and Joshua D Rabinowitz. (2006) 2006. “Kinetic Flux Profiling of Nitrogen Assimilation in Escherichia Coli.”. Nat Chem Biol 2 (10): 529-30.
    Reference Link
  • Osborne, Leslie C, William Bialek, and Stephen G Lisberger. (2004) 2004. “Time Course of Information about Motion Direction in Visual Area MT of Macaque Monkeys.”. J Neurosci 24 (13): 3210-22.
    Reference Link
  • Murphy, Coleen T, Steven A McCarroll, Cornelia I Bargmann, Andrew Fraser, Ravi S Kamath, Julie Ahringer, Hao Li, and Cynthia Kenyon. (2003) 2003. “Genes That Act Downstream of DAF-16 to Influence the Lifespan of Caenorhabditis Elegans.”. Nature 424 (6946): 277-83.
    Reference Link
  • Lu, Rong, Florian Markowetz, Richard D Unwin, Jeffrey T Leek, Edoardo M Airoldi, Ben D MacArthur, Alexander Lachmann, et al. (2009) 2009. “Systems-Level Dynamic Analyses of Fate Change in Murine Embryonic Stem Cells.”. Nature 462 (7271): 358-62.
    Reference Link
  • Berezhkovskii, Alexander M, Christine Sample, and Stanislav Y Shvartsman. (2011) 2011. “Formation of Morphogen Gradients: Local Accumulation Time.”. Phys Rev E Stat Nonlin Soft Matter Phys 83 (5 Pt 1): 051906.
    Reference Link
  • Liu, Ping, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2011) 2011. “Substrate-Dependent Control of ERK Phosphorylation Can Lead to Oscillations.”. Biophys J 101 (11): 2572-81.
    Reference Link
  • Zhang, Naigong, Chen Zeng, and Ned S Wingreen. (2004) 2004. “Fast Accurate Evaluation of Protein Solvent Exposure.”. Proteins 57 (3): 565-76.
    Reference Link
  • Brenner, Naama, Oded Agam, William Bialek, and Rob de Ruyter van Steveninck. (2002) 2002. “Statistical Properties of Spike Trains: Universal and Stimulus-Dependent Aspects.”. Phys Rev E Stat Nonlin Soft Matter Phys 66 (3 Pt 1): 031907.
    Reference Link
  • Brooks, Dawn J, Jacques R Fresco, Arthur M Lesk, and Mona Singh. (2002) 2002. “Evolution of Amino Acid Frequencies in Proteins over Deep Time: Inferred Order of Introduction of Amino Acids into the Genetic Code.”. Mol Biol Evol 19 (10): 1645-55.
    Reference Link

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