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Repressor Proteins

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  • Cowden, John, and Michael Levine. (2002) 2002. “The Snail Repressor Positions Notch Signaling in the Drosophila Embryo.”. Development 129 (7): 1785-93.
    Reference Link
  • Markstein, Michele, Peter Markstein, Vicky Markstein, and Michael S Levine. (2002) 2002. “Genome-Wide Analysis of Clustered Dorsal Binding Sites Identifies Putative Target Genes in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 99 (2): 763-8.
    Reference Link
  • Bothma, Jacques P, Hernan G Garcia, Samuel Ng, Michael W Perry, Thomas Gregor, and Michael Levine. 2015. “Enhancer Additivity and Non-Additivity Are Determined by Enhancer Strength in the Drosophila Embryo.”. Elife 4.
    Reference Link
  • Bothma, Jacques P, Joe Magliocco, and Michael Levine. (2011) 2011. “The Snail Repressor Inhibits Release, Not Elongation, of Paused Pol II in the Drosophila Embryo.”. Curr Biol 21 (18): 1571-7.
    Reference Link
  • Kim, Yoosik, María José Andreu, Bomyi Lim, Kwanghun Chung, Mark Terayama, Gerardo Jiménez, Celeste A Berg, Hang Lu, and Stanislav Y Shvartsman. (2011) 2011. “Gene Regulation by MAPK Substrate Competition.”. Dev Cell 20 (6): 880-7.
    Reference Link
  • Munro, Daniel, Dario Ghersi, and Mona Singh. (2018) 2018. “Two Critical Positions in Zinc Finger Domains Are Heavily Mutated in Three Human Cancer Types.”. PLoS Comput Biol 14 (6): e1006290. doi:10.1371/journal.pcbi.1006290.
    Reference Link
  • Lenz, Derrick H, Kenny C Mok, Brendan N Lilley, Rahul Kulkarni V, Ned S Wingreen, and Bonnie L Bassler. (2004) 2004. “The Small RNA Chaperone Hfq and Multiple Small RNAs Control Quorum Sensing in Vibrio Harveyi and Vibrio Cholerae.”. Cell 118 (1): 69-82.
    Reference Link
  • Cande, Jessica Doran, Vivek S Chopra, and Michael Levine. (2009) 2009. “Evolving Enhancer-Promoter Interactions Within the Tinman Complex of the Flour Beetle, Tribolium Castaneum.”. Development 136 (18): 3153-60.
    Reference Link
  • Helman, Aharon, Bomyi Lim, María José Andreu, Yoosik Kim, Tatyana Shestkin, Hang Lu, Gerardo Jiménez, Stanislav Y Shvartsman, and Ze’ev Paroush. (2012) 2012. “RTK Signaling Modulates the Dorsal Gradient.”. Development 139 (16): 3032-9.
    Reference Link
  • Jaźwińska, A, N Kirov, E Wieschaus, S Roth, and C Rushlow. (1999) 1999. “The Drosophila Gene Brinker Reveals a Novel Mechanism of Dpp Target Gene Regulation.”. Cell 96 (4): 563-73.
    Reference Link
  • Markstein, Michele, Robert Zinzen, Peter Markstein, Ka-Ping Yee, Albert Erives, Angela Stathopoulos, and Michael Levine. (2004) 2004. “A Regulatory Code for Neurogenic Gene Expression in the Drosophila Embryo.”. Development 131 (10): 2387-94.
    Reference Link
  • Yakoby, Nir, Jessica Lembong, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “Drosophila Eggshell Is Patterned by Sequential Action of Feedforward and Feedback Loops.”. Development 135 (2): 343-51.
    Reference Link
  • Ahmed, Yashi, S Hayashi, A Levine, and E Wieschaus. (1998) 1998. “Regulation of Armadillo by a Drosophila APC Inhibits Neuronal Apoptosis During Retinal Development.”. Cell 93 (7): 1171-82.
    Reference Link
  • van Raamsdonk, C D, and S M Tilghman. (2000) 2000. “Dosage Requirement and Allelic Expression of PAX6 During Lens Placode Formation.”. Development 127 (24): 5439-48.
    Reference Link
  • Wang, Yufang, Kimberly C Tu, N P Ong, Bonnie L Bassler, and Ned S Wingreen. (2011) 2011. “Protein-Level Fluctuation Correlation at the Microcolony Level and Its Application to the Vibrio Harveyi Quorum-Sensing Circuit.”. Biophys J 100 (12): 3045-53.
    Reference Link
  • Hark, A T, C J Schoenherr, D J Katz, R S Ingram, J M Levorse, and S M Tilghman. (2000) 2000. “CTCF Mediates Methylation-Sensitive Enhancer-Blocking Activity at the H19 Igf2 Locus.”. Nature 405 (6785): 486-9.
    Reference Link
  • Camper, S A, and S M Tilghman. (1989) 1989. “Postnatal Repression of the Alpha-Fetoprotein Gene Is Enhancer Independent.”. Genes Dev 3 (4): 537-46.
    Reference Link
  • Nibu, Yutaka, Kate Senger, and Michael Levine. (2003) 2003. “CtBP-Independent Repression in the Drosophila Embryo.”. Mol Cell Biol 23 (11): 3990-9.
    Reference Link
  • Chopra, Vivek S, David A Hendrix, Leighton J Core, Chiahao Tsui, John T Lis, and Michael Levine. (2011) 2011. “The Polycomb Group Mutant Esc Leads to Augmented Levels of Paused Pol II in the Drosophila Embryo.”. Mol Cell 42 (6): 837-44.
    Reference Link
  • Hickman, Mark J, Allegra A Petti, Olivia Ho-Shing, Sanford J Silverman, Scott McIsaac, Traci A Lee, and David Botstein. (2011) 2011. “Coordinated Regulation of Sulfur and Phospholipid Metabolism Reflects the Importance of Methylation in the Growth of Yeast.”. Mol Biol Cell 22 (21): 4192-204.
    Reference Link
  • van Raamsdonk, C D, and S M Tilghman. (2001) 2001. “Optimizing the Detection of Nascent Transcripts by RNA Fluorescence in Situ Hybridization.”. Nucleic Acids Res 29 (8).
    Reference Link
  • Rauskolb, C, and E Wieschaus. (1994) 1994. “Coordinate Regulation of Downstream Genes by Extradenticle and the Homeotic Selector Proteins.”. EMBO J 13 (15): 3561-9.
    Reference Link
  • Pompeani, Audra J, Joseph J Irgon, Michael F Berger, Martha L Bulyk, Ned S Wingreen, and Bonnie L Bassler. (2008) 2008. “The Vibrio Harveyi Master Quorum-Sensing Regulator, LuxR, a TetR-Type Protein Is Both an Activator and a Repressor: DNA Recognition and Binding Specificity at Target Promoters.”. Mol Microbiol 70 (1): 76-88.
    Reference Link
  • Tu, Kimberly C, Tao Long, Sine L Svenningsen, Ned S Wingreen, and Bonnie L Bassler. (2010) 2010. “Negative Feedback Loops Involving Small Regulatory RNAs Precisely Control the Vibrio Harveyi Quorum-Sensing Response.”. Mol Cell 37 (4): 567-79.
    Reference Link
  • Kim, Yoosik, Antonina Iagovitina, Keisuke Ishihara, Kate M Fitzgerald, Bart Deplancke, Dmitri Papatsenko, and Stanislav Y Shvartsman. (2013) 2013. “Context-Dependent Transcriptional Interpretation of Mitogen Activated Protein Kinase Signaling in the Drosophila Embryo.”. Chaos 23 (2): 025105.
    Reference Link
  • Vasicek, T J, L Zeng, X J Guan, T Zhang, F Costantini, and S M Tilghman. (1997) 1997. “Two Dominant Mutations in the Mouse Fused Gene Are the Result of Transposon Insertions.”. Genetics 147 (2): 777-86.
    Reference Link
  • Teng, Shu-Wen, Yufang Wang, Kimberly C Tu, Tao Long, Pankaj Mehta, Ned S Wingreen, Bonnie L Bassler, and N P Ong. (2010) 2010. “Measurement of the Copy Number of the Master Quorum-Sensing Regulator of a Bacterial Cell.”. Biophys J 98 (9): 2024-31.
    Reference Link
  • Jiménez, Gerardo, Stanislav Y Shvartsman, and Ze’ev Paroush. (2012) 2012. “The Capicua Repressor--a General Sensor of RTK Signaling in Development and Disease.”. J Cell Sci 125 (Pt 6): 1383-91.
    Reference Link
  • Ronen, Michal, and David Botstein. (2006) 2006. “Transcriptional Response of Steady-State Yeast Cultures to Transient Perturbations in Carbon Source.”. Proc Natl Acad Sci U S A 103 (2): 389-94.
    Reference Link
  • Lim, Bomyi, Núria Samper, Hang Lu, Christine Rushlow, Gerardo Jiménez, and Stanislav Y Shvartsman. (2013) 2013. “Kinetics of Gene Derepression by ERK Signaling.”. Proc Natl Acad Sci U S A 110 (25): 10330-5.
    Reference Link
  • Smith, Kevin S, Sumit K Chanda, Merel Lingbeek, Douglas T Ross, David Botstein, Maarten van Lohuizen, and Michael L Cleary. (2003) 2003. “Bmi-1 Regulation of INK4A-ARF Is a Downstream Requirement for Transformation of Hematopoietic Progenitors by E2a-Pbx1.”. Mol Cell 12 (2): 393-400.
    Reference Link
  • Chopra, Vivek S, Nikki Kong, and Michael Levine. (2012) 2012. “Transcriptional Repression via Antilooping in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 109 (24): 9460-4.
    Reference Link
  • Vincent, A, J T Blankenship, and E Wieschaus. (1997) 1997. “Integration of the Head and Trunk Segmentation Systems Controls Cephalic Furrow Formation in Drosophila.”. Development 124 (19): 3747-54.
    Reference Link
  • Tolwinski, N S, and E Wieschaus. (2001) 2001. “Armadillo Nuclear Import Is Regulated by Cytoplasmic Anchor Axin and Nuclear Anchor DTCF Pan.”. Development 128 (11): 2107-17.
    Reference Link
  • Grimm, Oliver, Victoria Sanchez Zini, Yoosik Kim, Jordi Casanova, Stanislav Y Shvartsman, and Eric Wieschaus. (2012) 2012. “Torso RTK Controls Capicua Degradation by Changing Its Subcellular Localization.”. Development 139 (21): 3962-8.
    Reference Link
  • Wang, Wei, Michael Cherry, Yigal Nochomovitz, Emmitt Jolly, David Botstein, and Hao Li. (2005) 2005. “Inference of Combinatorial Regulation in Yeast Transcriptional Networks: A Case Study of Sporulation.”. Proc Natl Acad Sci U S A 102 (6): 1998-2003.
    Reference Link
  • Teng, Shu-Wen, Jessica N Schaffer, Kimberly C Tu, Pankaj Mehta, Wenyun Lu, N P Ong, Bonnie L Bassler, and Ned S Wingreen. (2011) 2011. “Active Regulation of Receptor Ratios Controls Integration of Quorum-Sensing Signals in Vibrio Harveyi.”. Mol Syst Biol 7: 491.
    Reference Link
  • Kim, Yoosik, Ze’ev Paroush, Knud Nairz, Ernst Hafen, Gerardo Jiménez, and Stanislav Y Shvartsman. (2011) 2011. “Substrate-Dependent Control of MAPK Phosphorylation in Vivo.”. Mol Syst Biol 7: 467.
    Reference Link
  • Wong, Aaron K, Christopher Y Park, Casey S Greene, Lars A Bongo, Yuanfang Guan, and Olga G Troyanskaya. (2012) 2012. “IMP: A Multi-Species Functional Genomics Portal for Integration, Visualization and Prediction of Protein Functions and Networks.”. Nucleic Acids Res 40 (Web Server issue).
    Reference Link
  • Dubuis, Julien, Reba Samanta, and Thomas Gregor. 2013. “Accurate Measurements of Dynamics and Reproducibility in Small Genetic Networks.”. Mol Syst Biol 9: 639.
    Reference Link

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