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Promoter Regions, Genetic

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  • Chopra, Vivek S, Jessica Doran Cande, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Stalled Hox Promoters As Chromosomal Boundaries.”. Genes Dev 23 (13): 1505-9.
    Reference Link
  • McIsaac, Scott, Sanford J Silverman, Megan N McClean, Patrick A Gibney, Joanna Macinskas, Mark J Hickman, Allegra A Petti, and David Botstein. (2011) 2011. “Fast-Acting and Nearly Gratuitous Induction of Gene Expression and Protein Depletion in Saccharomyces Cerevisiae.”. Mol Biol Cell 22 (22): 4447-59.
    Reference Link
  • Trinklein, Nathan D, John I Murray, Sara J Hartman, David Botstein, and Richard M Myers. (2004) 2004. “The Role of Heat Shock Transcription Factor 1 in the Genome-Wide Regulation of the Mammalian Heat Shock Response.”. Mol Biol Cell 15 (3): 1254-61.
    Reference Link
  • Cande, Jessica Doran, Vivek S Chopra, and Michael Levine. (2009) 2009. “Evolving Enhancer-Promoter Interactions Within the Tinman Complex of the Flour Beetle, Tribolium Castaneum.”. Development 136 (18): 3153-60.
    Reference Link
  • Spear, B T, and S M Tilghman. (1990) 1990. “Role of Alpha-Fetoprotein Regulatory Elements in Transcriptional Activation in Transient Heterokaryons.”. Mol Cell Biol 10 (10): 5047-54.
    Reference Link
  • Bartolomei, M S, A L Webber, M E Brunkow, and S M Tilghman. (1993) 1993. “Epigenetic Mechanisms Underlying the Imprinting of the Mouse H19 Gene.”. Genes Dev 7 (9): 1663-73.
    Reference Link
  • Chopra, Vivek S, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Regulation of Hox Gene Activity by Transcriptional Elongation in Drosophila.”. Curr Biol 19 (8): 688-93.
    Reference Link
  • Kenyon, Cynthia, and Coleen T Murphy. (2006) 2006. “Enrichment of Regulatory Motifs Upstream of Predicted DAF-16 Targets.”. Nat Genet 38 (4): 397-8; author reply 398.
    Reference Link
  • Calhoun, Vincent C, Angelike Stathopoulos, and Michael Levine. (2002) 2002. “Promoter-Proximal Tethering Elements Regulate Enhancer-Promoter Specificity in the Drosophila Antennapedia Complex.”. Proc Natl Acad Sci U S A 99 (14): 9243-7.
    Reference Link
  • Schmidt, J, V, J M Levorse, and S M Tilghman. (1999) 1999. “Enhancer Competition Between H19 and Igf2 Does Not Mediate Their Imprinting.”. Proc Natl Acad Sci U S A 96 (17): 9733-8.
    Reference Link
  • Hendrix, David A, Joung-Woo Hong, Julia Zeitlinger, Daniel S Rokhsar, and Michael S Levine. (2008) 2008. “Promoter Elements Associated With RNA Pol II Stalling in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 105 (22): 7762-7.
    Reference Link
  • Mancini-Dinardo, Debora, Scott J S Steele, John M Levorse, Robert S Ingram, and Shirley M Tilghman. (2006) 2006. “Elongation of the Kcnq1ot1 Transcript Is Required for Genomic Imprinting of Neighboring Genes.”. Genes Dev 20 (10): 1268-82.
    Reference Link
  • Levine, Michael. (2011) 2011. “Paused RNA Polymerase II As a Developmental Checkpoint.”. Cell 145 (4): 502-11.
    Reference Link
  • Jaźwińska, A, N Kirov, E Wieschaus, S Roth, and C Rushlow. (1999) 1999. “The Drosophila Gene Brinker Reveals a Novel Mechanism of Dpp Target Gene Regulation.”. Cell 96 (4): 563-73.
    Reference Link
  • Lagha, Mounia, Jacques P Bothma, Emilia Esposito, Samuel Ng, Laura Stefanik, Chiahao Tsui, Jeffrey Johnston, et al. (2013) 2013. “Paused Pol II Coordinates Tissue Morphogenesis in the Drosophila Embryo.”. Cell 153 (5): 976-87.
    Reference Link
  • Mancini-Dinardo, Debora, Scott J S Steele, Robert S Ingram, and Shirley M Tilghman. (2003) 2003. “A Differentially Methylated Region Within the Gene Kcnq1 Functions As an Imprinted Promoter and Silencer.”. Hum Mol Genet 12 (3): 283-94.
    Reference Link
  • Peifer, M, and E Wieschaus. (1990) 1990. “Mutations in the Drosophila Gene Extradenticle Affect the Way Specific Homeo Domain Proteins Regulate Segmental Identity.”. Genes Dev 4 (7): 1209-23.
    Reference Link
  • Markstein, Michele, and Michael Levine. (2002) 2002. “Decoding Cis-Regulatory DNAs in the Drosophila Genome.”. Curr Opin Genet Dev 12 (5): 601-6.
    Reference Link
  • Levine, Michael, Claudia Cattoglio, and Robert Tjian. (2014) 2014. “Looping Back to Leap Forward: Transcription Enters a New Era.”. Cell 157 (1): 13-25.
    Reference Link
  • Calhoun, Vincent C, and Michael Levine. (2003) 2003. “Coordinate Regulation of an Extended Chromosome Domain.”. Cell 113 (3): 278-80.
    Reference Link
  • Pompeani, Audra J, Joseph J Irgon, Michael F Berger, Martha L Bulyk, Ned S Wingreen, and Bonnie L Bassler. (2008) 2008. “The Vibrio Harveyi Master Quorum-Sensing Regulator, LuxR, a TetR-Type Protein Is Both an Activator and a Repressor: DNA Recognition and Binding Specificity at Target Promoters.”. Mol Microbiol 70 (1): 76-88.
    Reference Link
  • Calhoun, Vincent C, and Michael Levine. (2003) 2003. “Long-Range Enhancer-Promoter Interactions in the Scr-Antp Interval of the Drosophila Antennapedia Complex.”. Proc Natl Acad Sci U S A 100 (17): 9878-83.
    Reference Link
  • Papatsenko, Dmitri, Andrey Kislyuk, Michael Levine, and Inna Dubchak. (2006) 2006. “Conservation Patterns in Different Functional Sequence Categories of Divergent Drosophila Species.”. Genomics 88 (4): 431-42.
    Reference Link
  • Yoo-Warren, H, , R S Ingram, and S M Tilghman. (1988) 1988. “Two Regulatory Domains Flank the Mouse H19 Gene.”. Mol Cell Biol 8 (11): 4707-15.
    Reference Link
  • Nair, Venugopalan D, Yongchao Ge, Natarajan Balasubramaniyan, Jaeyun Kim, Yuya Okawa, Maria Chikina, Olga Troyanskaya, and Stuart C Sealfon. (2012) 2012. “Involvement of Histone Demethylase LSD1 in Short-Time-Scale Gene Expression Changes During Cell Cycle Progression in Embryonic Stem Cells.”. Mol Cell Biol 32 (23): 4861-76.
    Reference Link
  • Webber, A L, and S M Tilghman. (1998) 1998. “The Absence of Enhancer Competition Between Igf2 and H19 Following Transfer into Differentiated Cells.”. Mol Cell Biol 18 (4): 1903-10.
    Reference Link
  • Chopra, Vivek S, Nikki Kong, and Michael Levine. (2012) 2012. “Transcriptional Repression via Antilooping in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 109 (24): 9460-4.
    Reference Link
  • Wang, Wei, Michael Cherry, Yigal Nochomovitz, Emmitt Jolly, David Botstein, and Hao Li. (2005) 2005. “Inference of Combinatorial Regulation in Yeast Transcriptional Networks: A Case Study of Sporulation.”. Proc Natl Acad Sci U S A 102 (6): 1998-2003.
    Reference Link
  • Bothma, Jacques P, Hernan G Garcia, Samuel Ng, Michael W Perry, Thomas Gregor, and Michael Levine. 2015. “Enhancer Additivity and Non-Additivity Are Determined by Enhancer Strength in the Drosophila Embryo.”. Elife 4.
    Reference Link
  • Feuerman, M H, R Godbout, R S Ingram, and S M Tilghman. (1989) 1989. “Tissue-Specific Transcription of the Mouse Alpha-Fetoprotein Gene Promoter Is Dependent on HNF-1.”. Mol Cell Biol 9 (10): 4204-12.
    Reference Link
  • Morize, P, A E Christiansen, M Costa, S Parks, and E Wieschaus. (1998) 1998. “Hyperactivation of the Folded Gastrulation Pathway Induces Specific Cell Shape Changes.”. Development 125 (4): 589-97.
    Reference Link
  • Zhou, Jian, Chandra L Theesfeld, Kevin Yao, Kathleen M Chen, Aaron K Wong, and Olga G Troyanskaya. (2018) 2018. “Deep Learning Sequence-Based Ab Initio Prediction of Variant Effects on Expression and Disease Risk.”. Nat Genet 50 (8): 1171-79. doi:10.1038/s41588-018-0160-6.
    Reference Link
  • Di Gregorio, Anna, Richard M Harland, Michael Levine, and Elena Silva Casey. (2002) 2002. “Tail Morphogenesis in the Ascidian, Ciona Intestinalis, Requires Cooperation Between Notochord and Muscle.”. Dev Biol 244 (2): 385-95.
    Reference Link
  • Chikina, Maria D, Curtis Huttenhower, Coleen T Murphy, and Olga G Troyanskaya. (2009) 2009. “Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis Elegans.”. PLoS Comput Biol 5 (6): e1000417.
    Reference Link
  • McIsaac, Scott, Patrick A Gibney, Sunil S Chandran, Kirsten R Benjamin, and David Botstein. (2014) 2014. “Synthetic Biology Tools for Programming Gene Expression Without Nutritional Perturbations in Saccharomyces Cerevisiae.”. Nucleic Acids Res 42 (6): e48.
    Reference Link
  • Yoshimoto, Hiroyuki, Kirstie Saltsman, Audrey P Gasch, Hong Xia Li, Nobuo Ogawa, David Botstein, Patrick O Brown, and Martha S Cyert. (2002) 2002. “Genome-Wide Analysis of Gene Expression Regulated by the Calcineurin Crz1p Signaling Pathway in Saccharomyces Cerevisiae.”. J Biol Chem 277 (34): 31079-88.
    Reference Link

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