Myers, Chad L, Xing Chen, and Olga G Troyanskaya. 2005. “Visualization-Based Discovery and Analysis of Genomic Aberrations in Microarray Data.”. BMC Bioinformatics 6: 146.

Schupbach, T, and E Wieschaus. 1998. “Probing for Gene Specificity in Epithelial Development.”. Int J Dev Biol 42 (3): 249-55.

Gresham, David, Douglas M Ruderfer, Stephen C Pratt, Joseph Schacherer, Maitreya Dunham, David Botstein, and Leonid Kruglyak. (2006) 2006. “Genome-Wide Detection of Polymorphisms at Nucleotide Resolution With a Single DNA Microarray.”. Science 311 (5769): 1932-6.

Grosshans, Jörg, Arno J Müller, and Eric Wieschaus. (2003) 2003. “Control of Cleavage Cycles in Drosophila Embryos by frühstart.”. Dev Cell 5 (2): 285-94.

Haley, Benjamin, Bryon Foys, and Michael Levine. (2010) 2010. “Vectors and Parameters That Enhance the Efficacy of RNAi-Mediated Gene Disruption in Transgenic Drosophila.”. Proc Natl Acad Sci U S A 107 (25): 11435-40.

Wieschaus, E, N Perrimon, and R Finkelstein. (1992) 1992. “Orthodenticle Activity Is Required for the Development of Medial Structures in the Larval and Adult Epidermis of Drosophila.”. Development 115 (3): 801-11.

Slotte, Tanja, Khaled M Hazzouri, David Stern, Peter Andolfatto, and Stephen I Wright. (2012) 2012. “Genetic Architecture and Adaptive Significance of the Selfing Syndrome in Capsella.”. Evolution 66 (5): 1360-74.

Reaves, Marshall Louis, and Joshua D Rabinowitz. (2011) 2011. “Characteristic Phenotypes Associated With PtsN-Null Mutants in Escherichia Coli K-12 Are Absent in Strains With Functional IlvG.”. J Bacteriol 193 (18): 4576-81.

Ober, Ulrike, Julien Ayroles, Eric A Stone, Stephen Richards, Dianhui Zhu, Richard A Gibbs, Christian Stricker, et al. 2012. “Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila Melanogaster.”. PLoS Genet 8 (5): e1002685.

Caspary, T, M A Cleary, E J Perlman, P Zhang, S J Elledge, and S M Tilghman. (1999) 1999. “Oppositely Imprinted Genes p57(Kip2) and Igf2 Interact in a Mouse Model for Beckwith-Wiedemann Syndrome.”. Genes Dev 13 (23): 3115-24.

Coulter, D E, and E Wieschaus. (1988) 1988. “Gene Activities and Segmental Patterning in Drosophila: Analysis of Odd-Skipped and Pair-Rule Double Mutants.”. Genes Dev 2 (12B): 1812-23.

Dunham, Maitreya, Hassan Badrane, Tracy Ferea, Julian Adams, Patrick O Brown, Frank Rosenzweig, and David Botstein. (2002) 2002. “Characteristic Genome Rearrangements in Experimental Evolution of Saccharomyces Cerevisiae.”. Proc Natl Acad Sci U S A 99 (25): 16144-9.

Edwards, Alexis C, Julien Ayroles, Eric A Stone, Mary Anna Carbone, Richard F Lyman, and Trudy F C Mackay. 2009. “A Transcriptional Network Associated With Natural Variation in Drosophila Aggressive Behavior.”. Genome Biol 10 (7): R76.

Tolwinski, Nicholas S, and Eric Wieschaus. (2004) 2004. “A Nuclear Function for Armadillo Beta-Catenin.”. PLoS Biol 2 (4): E95.

Guan, Yuanfang, Cheryl L Ackert-Bicknell, Braden Kell, Olga G Troyanskaya, and Matthew A Hibbs. 2010. “Functional Genomics Complements Quantitative Genetics in Identifying Disease-Gene Associations.”. PLoS Comput Biol 6 (11): e1000991.

Schejter, E D, and E Wieschaus. (1993) 1993. “Bottleneck Acts As a Regulator of the Microfilament Network Governing Cellularization of the Drosophila Embryo.”. Cell 75 (2): 373-85.

Ayroles, Julien, Mary Anna Carbone, Eric A Stone, Katherine W Jordan, Richard F Lyman, Michael M Magwire, Stephanie M Rollmann, et al. (2009) 2009. “Systems Genetics of Complex Traits in Drosophila Melanogaster.”. Nat Genet 41 (3): 299-307.

Andolfatto, Peter, Mark Scriber, and Brian Charlesworth. (2003) 2003. “No Association Between Mitochondrial DNA Haplotypes and a Female-Limited Mimicry Phenotype in Papilio Glaucus.”. Evolution 57 (2): 305-16.

Irvine, K D, and E Wieschaus. (1994) 1994. “Fringe, a Boundary-Specific Signaling Molecule, Mediates Interactions Between Dorsal and Ventral Cells During Drosophila Wing Development.”. Cell 79 (4): 595-606.

Mohler, J, and E F Wieschaus. 1985. “Bicaudal Mutations of Drosophila Melanogaster: Alteration of Blastoderm Cell Fate.”. Cold Spring Harb Symp Quant Biol 50: 105-11.

Click, Eleanor S, Tim Stearns, and David Botstein. (2002) 2002. “Systematic Structure-Function Analysis of the Small GTPase Arf1 in Yeast.”. Mol Biol Cell 13 (5): 1652-64.

Markowetz, Florian, Dennis Kostka, Olga G Troyanskaya, and Rainer Spang. (2007) 2007. “Nested Effects Models for High-Dimensional Phenotyping Screens.”. Bioinformatics 23 (13).

Schupbach, T, and E Wieschaus. (1989) 1989. “Female Sterile Mutations on the Second Chromosome of Drosophila Melanogaster. I. Maternal Effect Mutations.”. Genetics 121 (1): 101-17.

Wieschaus, E, and R Riggleman. (1987) 1987. “Autonomous Requirements for the Segment Polarity Gene Armadillo During Drosophila Embryogenesis.”. Cell 49 (2): 177-84.

Riggleman, B, P Schedl, and E Wieschaus. (1990) 1990. “Spatial Expression of the Drosophila Segment Polarity Gene Armadillo Is Posttranscriptionally Regulated by Wingless.”. Cell 63 (3): 549-60.

Andolfatto, Peter, Dan Davison, Deniz Erezyilmaz, Tina T Hu, Joshua Mast, Tomoko Sunayama-Morita, and David L Stern. (2011) 2011. “Multiplexed Shotgun Genotyping for Rapid and Efficient Genetic Mapping.”. Genome Res 21 (4): 610-7.

Schupbach, T, and E Wieschaus. (1991) 1991. “Female Sterile Mutations on the Second Chromosome of Drosophila Melanogaster. II. Mutations Blocking Oogenesis or Altering Egg Morphology.”. Genetics 129 (4): 1119-36.

Morozova, Tatiana, V, Julien Ayroles, Katherine W Jordan, Laura Duncan, Mary Anna Carbone, Richard F Lyman, Eric A Stone, et al. (2009) 2009. “Alcohol Sensitivity in Drosophila: Translational Potential of Systems Genetics.”. Genetics 183 (2): 733-45, 1SI.

Hughes, Kimberly A, Julien Ayroles, Melissa M Reedy, Jenny M Drnevich, Kevin C Rowe, Elizabeth A Ruedi, Carla E Cáceres, and Ken N Paige. (2006) 2006. “Segregating Variation in the Transcriptome: Cis Regulation and Additivity of Effects.”. Genetics 173 (3): 1347-55.

Haarer, Brian, Susan Viggiano, Mathew A Hibbs, Olga G Troyanskaya, and David C Amberg. (2007) 2007. “Modeling Complex Genetic Interactions in a Simple Eukaryotic Genome: Actin Displays a Rich Spectrum of Complex Haploinsufficiencies.”. Genes Dev 21 (2): 148-59.

Kurihara, L J, E Semenova, J M Levorse, and S M Tilghman. (2000) 2000. “Expression and Functional Analysis of Uch-L3 During Mouse Development.”. Mol Cell Biol 20 (7): 2498-504.

Kaletsky, Rachel, Vanisha Lakhina, Rachel Arey, April Williams, Jessica Landis, Jasmine M Ashraf, and Coleen T Murphy. (2016) 2016. “The C. Elegans Adult Neuronal IIS FOXO Transcriptome Reveals Adult Phenotype Regulators.”. Nature 529 (7584): 92-6. doi:10.1038/nature16483.

Bejsovec, A, and E Wieschaus. (1993) 1993. “Segment Polarity Gene Interactions Modulate Epidermal Patterning in Drosophila Embryos.”. Development 119 (2): 501-17.

Shvartsman, Stanislav Y, Cyrill B Muratov, and Douglas A Lauffenburger. (2002) 2002. “Modeling and Computational Analysis of EGF Receptor-Mediated Cell Communication in Drosophila Oogenesis.”. Development 129 (11): 2577-89.

Mackay, Trudy F C, Stephen Richards, Eric A Stone, Antonio Barbadilla, Julien Ayroles, Dianhui Zhu, Sònia Casillas, et al. (2012) 2012. “The Drosophila Melanogaster Genetic Reference Panel.”. Nature 482 (7384): 173-8.

Zhou, Jian, Christopher Y Park, Chandra L Theesfeld, Aaron K Wong, Yuan Yuan, Claudia Scheckel, John J Fak, et al. (2019) 2019. “Whole-Genome Deep-Learning Analysis Identifies Contribution of Noncoding Mutations to Autism Risk.”. Nat Genet 51 (6): 973-80. doi:10.1038/s41588-019-0420-0.

Peifer, M, C Rauskolb, M Williams, B Riggleman, and E Wieschaus. (1991) 1991. “The Segment Polarity Gene Armadillo Interacts With the Wingless Signaling Pathway in Both Embryonic and Adult Pattern Formation.”. Development 111 (4): 1029-43.

Markowetz, Florian, Klaas W Mulder, Edoardo M Airoldi, Ihor R Lemischka, and Olga G Troyanskaya. 2010. “Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-Depleted Murine Embryonic Stem Cells.”. PLoS Comput Biol 6 (12): e1001034.

Jaźwińska, A, N Kirov, E Wieschaus, S Roth, and C Rushlow. (1999) 1999. “The Drosophila Gene Brinker Reveals a Novel Mechanism of Dpp Target Gene Regulation.”. Cell 96 (4): 563-73.

Benson, Kiara K, Wenxiang Hu, Angela H Weller, Alexis H Bennett, Eric R Chen, Sumeet A Khetarpal, Satoshi Yoshino, et al. (2019) 2019. “Natural Human Genetic Variation Determines Basal and Inducible Expression of , an Obesity-Associated Gene.”. Proc Natl Acad Sci U S A 116 (46): 23232-42. doi:10.1073/pnas.1913199116.

Wingreen, Ned S, Jonathan Miller, and Edward C Cox. (2003) 2003. “Scaling of Mutational Effects in Models for Pleiotropy.”. Genetics 164 (3): 1221-8.

Morize, P, A E Christiansen, M Costa, S Parks, and E Wieschaus. (1998) 1998. “Hyperactivation of the Folded Gastrulation Pathway Induces Specific Cell Shape Changes.”. Development 125 (4): 589-97.

Gergen, J P, and E Wieschaus. (1986) 1986. “Dosage Requirements for Runt in the Segmentation of Drosophila Embryos.”. Cell 45 (2): 289-99.

Engel, Stacia R, Rama Balakrishnan, Gail Binkley, Karen R Christie, Maria C Costanzo, Selina S Dwight, Dianna G Fisk, et al. (2010) 2010. “Saccharomyces Genome Database Provides Mutant Phenotype Data.”. Nucleic Acids Res 38 (Database issue).

Brown, James A, Gavin Sherlock, Chad L Myers, Nicola M Burrows, Changchun Deng, Irene Wu, Kelly E McCann, Olga G Troyanskaya, and Martin Brown. 2006. “Global Analysis of Gene Function in Yeast by Quantitative Phenotypic Profiling.”. Mol Syst Biol 2: 2006.0001.

van Raamsdonk, C D, and S M Tilghman. (2000) 2000. “Dosage Requirement and Allelic Expression of PAX6 During Lens Placode Formation.”. Development 127 (24): 5439-48.

Wieschaus, E, and D Sweeton. (1988) 1988. “Requirements for X-Linked Zygotic Gene Activity During Cellularization of Early Drosophila Embryos.”. Development 104 (3): 483-93.

Marsh, J L, and E Wieschaus. (1977) 1977. “Germ-Line Dependence of the Maroon-Like Maternal Effect in Drosophila.”. Dev Biol 60 (2): 396-403.

Chang, Howard Y, Jen-Tsan Chi, Sandrine Dudoit, Chanda Bondre, Matt van de Rijn, David Botstein, and Patrick O Brown. (2002) 2002. “Diversity, Topographic Differentiation, and Positional Memory in Human Fibroblasts.”. Proc Natl Acad Sci U S A 99 (20): 12877-82.

Gresham, David, Michael M Desai, Cheryl M Tucker, Harry T Jenq, Dave A Pai, Alexandra Ward, Christopher G DeSevo, David Botstein, and Maitreya Dunham. (2008) 2008. “The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast.”. PLoS Genet 4 (12): e1000303.