Klosinska, Maja M, Christopher A Crutchfield, Patrick H Bradley, Joshua D Rabinowitz, and James R Broach. (2011) 2011. “Yeast Cells Can Access Distinct Quiescent States.”. Genes Dev 25 (4): 336-49. Reference Link
Rabinowitz, Joshua D, and Livia Vastag. (2012) 2012. “Teaching the Design Principles of Metabolism.”. Nat Chem Biol 8 (6): 497-501. Reference Link
Amador-Noguez, Daniel, Xiao-Jiang Feng, Jing Fan, Nathaniel Roquet, Herschel Rabitz, and Joshua D Rabinowitz. (2010) 2010. “Systems-Level Metabolic Flux Profiling Elucidates a Complete, Bifurcated Tricarboxylic Acid Cycle in Clostridium Acetobutylicum.”. J Bacteriol 192 (17): 4452-61. Reference Link
Jiang, Peng, and Mona Singh. (2010) 2010. “SPICi: A Fast Clustering Algorithm for Large Biological Networks.”. Bioinformatics 26 (8): 1105-11. Reference Link
Park, Christopher Y, David C Hess, Curtis Huttenhower, and Olga G Troyanskaya. 2010. “Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components.”. PLoS Comput Biol 6 (11): e1001009. Reference Link
Goodarzi, Hani, Bryson D Bennett, Sasan Amini, Marshall L Reaves, Alison K Hottes, Joshua D Rabinowitz, and Saeed Tavazoie. (2010) 2010. “Regulatory and Metabolic Rewiring During Laboratory Evolution of Ethanol Tolerance in E. Coli.”. Mol Syst Biol 6: 378. Reference Link
Reaves, Marshall Louis, and Joshua D Rabinowitz. (2011) 2011. “Metabolomics in Systems Microbiology.”. Curr Opin Biotechnol 22 (1): 17-25. Reference Link
Slavov, Nikolai, Joanna Macinskas, Amy A Caudy, and David Botstein. (2011) 2011. “Metabolic Cycling Without Cell Division Cycling in Respiring Yeast.”. Proc Natl Acad Sci U S A 108 (47): 19090-5. Reference Link
Huttenhower, Curtis, Sajid O Mehmood, and Olga G Troyanskaya. 2009. “Graphle: Interactive Exploration of Large, Dense Graphs.”. BMC Bioinformatics 10: 417. Reference Link
Fan, Jing, Jurre J Kamphorst, Robin Mathew, Michelle K Chung, Eileen White, Tomer Shlomi, and Joshua D Rabinowitz. 2013. “Glutamine-Driven Oxidative Phosphorylation Is a Major ATP Source in Transformed Mammalian Cells in Both Normoxia and Hypoxia.”. Mol Syst Biol 9: 712. Reference Link
Costanzo, Michael, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D Spear, Carolyn S Sevier, Huiming Ding, et al. (2010) 2010. “The Genetic Landscape of a Cell.”. Science 327 (5964): 425-31. Reference Link
Piazza, Matthew, Xiao-Jiang Feng, Joshua D Rabinowitz, and Herschel Rabitz. (2008) 2008. “Diverse Metabolic Model Parameters Generate Similar Methionine Cycle Dynamics.”. J Theor Biol 251 (4): 628-39. Reference Link
Myers, Chad L, Camelia Chiriac, and Olga G Troyanskaya. 2009. “Discovering Biological Networks from Diverse Functional Genomic Data.”. Methods Mol Biol 563: 157-75. Reference Link
Slavov, Nikolai, Edoardo M Airoldi, Alexander van Oudenaarden, and David Botstein. (2012) 2012. “A Conserved Cell Growth Cycle Can Account for the Environmental Stress Responses of Divergent Eukaryotes.”. Mol Biol Cell 23 (10): 1986-97. Reference Link
Markowetz, Florian, and Olga G Troyanskaya. (2007) 2007. “Computational Identification of Cellular Networks and Pathways.”. Mol Biosyst 3 (7): 478-82. Reference Link
Gibney, Patrick A, Charles Lu, Amy A Caudy, David C Hess, and David Botstein. (2013) 2013. “Yeast Metabolic and Signaling Genes Are Required for Heat-Shock Survival and Have Little Overlap With the Heat-Induced Genes.”. Proc Natl Acad Sci U S A 110 (46). Reference Link
Rabinowitz, Joshua D. (2007) 2007. “Cellular Metabolomics of Escherchia Coli.”. Expert Rev Proteomics 4 (2): 187-98. Reference Link
