Skinnider, Michael, Nichollas Scott, Anna Prudova, Craig Kerr, Nikolay Stoynov, Greg Stacey, Queenie Chan, David Rattray, Jörg Gsponer, and Leonard Foster. (2021) 2021. “An Atlas of Protein-Protein Interactions across Mouse Tissues.”. Cell 184 (15): 4073-4089.e17. doi:10.1016/j.cell.2021.06.003. Reference Link
Khan, Zia, Sasan Amini, Joshua S Bloom, Cristian Ruse, Amy A Caudy, Leonid Kruglyak, Mona Singh, David H Perlman, and Saeed Tavazoie. 2011. “Accurate Proteome-Wide Protein Quantification from High-Resolution 15N Mass Spectra.”. Genome Biol 12 (12): R122. Reference Link
Bennett, Bryson D, Jie Yuan, Elizabeth H Kimball, and Joshua D Rabinowitz. 2008. “Absolute Quantitation of Intracellular Metabolite Concentrations by an Isotope Ratio-Based Approach.”. Nat Protoc 3 (8): 1299-311. Reference Link
Bennett, Bryson D, Elizabeth H Kimball, Melissa Gao, Robin Osterhout, Stephen J Van Dien, and Joshua D Rabinowitz. (2009) 2009. “Absolute Metabolite Concentrations and Implied Enzyme Active Site Occupancy in Escherichia Coli.”. Nat Chem Biol 5 (8): 593-9. Reference Link
Amador-Noguez, Daniel, Xiao-Jiang Feng, Jing Fan, Nathaniel Roquet, Herschel Rabitz, and Joshua D Rabinowitz. (2010) 2010. “Systems-Level Metabolic Flux Profiling Elucidates a Complete, Bifurcated Tricarboxylic Acid Cycle in Clostridium Acetobutylicum.”. J Bacteriol 192 (17): 4452-61. Reference Link
Reaves, Marshall Louis, Sunita Sinha, Joshua D Rabinowitz, Leonid Kruglyak, and Rosemary J Redfield. (2012) 2012. “Absence of Detectable Arsenate in DNA from Arsenate-Grown GFAJ-1 Cells.”. Science 337 (6093): 470-3. Reference Link
Liu, Sean T H, Ronit Sharon-Friling, Pavlina Ivanova, Stephen B Milne, David S Myers, Joshua D Rabinowitz, Alex Brown, and Thomas Shenk. (2011) 2011. “Synaptic Vesicle-Like Lipidome of Human Cytomegalovirus Virions Reveals a Role for SNARE Machinery in Virion Egress.”. Proc Natl Acad Sci U S A 108 (31): 12869-74. Reference Link
Lu, Wenyun, Xiaoyang Su, Matthias S Klein, Ian A Lewis, Oliver Fiehn, and Joshua D Rabinowitz. (2017) 2017. “Metabolite Measurement: Pitfalls to Avoid and Practices to Follow.”. Annu Rev Biochem 86: 277-304. doi:10.1146/annurev-biochem-061516-044952. Reference Link
Khan, Zia, Joshua S Bloom, Sasan Amini, Mona Singh, David H Perlman, Amy A Caudy, and Leonid Kruglyak. 2012. “Quantitative Measurement of Allele-Specific Protein Expression in a Diploid Yeast Hybrid by LC-MS.”. Mol Syst Biol 8: 602. Reference Link
Jang, Cholsoon, Li Chen, and Joshua D Rabinowitz. (2018) 2018. “Metabolomics and Isotope Tracing.”. Cell 173 (4): 822-37. doi:10.1016/j.cell.2018.03.055. Reference Link
Yuan, Jie, Christopher D Doucette, William U Fowler, Xiao-Jiang Feng, Matthew Piazza, Herschel A Rabitz, Ned S Wingreen, and Joshua D Rabinowitz. 2009. “Metabolomics-Driven Quantitative Analysis of Ammonia Assimilation in E. Coli.”. Mol Syst Biol 5: 302. Reference Link
Reaves, Marshall Louis, and Joshua D Rabinowitz. (2011) 2011. “Metabolomics in Systems Microbiology.”. Curr Opin Biotechnol 22 (1): 17-25. Reference Link
Melamud, Eugene, Livia Vastag, and Joshua D Rabinowitz. (2010) 2010. “Metabolomic Analysis and Visualization Engine for LC-MS Data.”. Anal Chem 82 (23): 9818-26. Reference Link
Crutchfield, Christopher A, Wenyun Lu, Eugene Melamud, and Joshua D Rabinowitz. 2010. “Mass Spectrometry-Based Metabolomics of Yeast.”. Methods Enzymol 470: 393-426. Reference Link
Clasquin, Michelle F, Eugene Melamud, and Joshua D Rabinowitz. (2012) 2012. “LC-MS Data Processing With MAVEN: A Metabolomic Analysis and Visualization Engine.”. Curr Protoc Bioinformatics Chapter 14: Unit14.11. Reference Link
Zee, Barry M, Rebecca S Levin, Bo Xu, Gary LeRoy, Ned S Wingreen, and Benjamin A Garcia. (2010) 2010. “In Vivo Residue-Specific Histone Methylation Dynamics.”. J Biol Chem 285 (5): 3341-50. Reference Link
Kimball, Elizabeth, and Joshua D Rabinowitz. (2006) 2006. “Identifying Decomposition Products in Extracts of Cellular Metabolites.”. Anal Biochem 358 (2): 273-80. Reference Link
Olszewski, Kellen L, Joanne M Morrisey, Daniel Wilinski, James M Burns, Akhil B Vaidya, Joshua D Rabinowitz, and Manuel Llinás. (2009) 2009. “Host-Parasite Interactions Revealed by Plasmodium Falciparum Metabolomics.”. Cell Host Microbe 5 (2): 191-9. Reference Link
Brauer, Matthew J, Jie Yuan, Bryson D Bennett, Wenyun Lu, Elizabeth Kimball, David Botstein, and Joshua D Rabinowitz. (2006) 2006. “Conservation of the Metabolomic Response to Starvation across Two Divergent Microbes.”. Proc Natl Acad Sci U S A 103 (51): 19302-7. Reference Link
Lu, Wenyun, Bryson D Bennett, and Joshua D Rabinowitz. (2008) 2008. “Analytical Strategies for LC-MS-Based Targeted Metabolomics.”. J Chromatogr B Analyt Technol Biomed Life Sci 871 (2): 236-42. Reference Link
