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Ligands

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  • Faculty Publications
  • Cheung, Lily S, Trudi Schüpbach, and Stanislav Y Shvartsman. (2011) 2011. “Pattern Formation by Receptor Tyrosine Kinases: Analysis of the Gurken Gradient in Drosophila Oogenesis.”. Curr Opin Genet Dev 21 (6): 719-25.
    Reference Link
  • Gilman, Alfred G, Melvin I Simon, Henry R Bourne, Bruce A Harris, Rochelle Long, Elliott M Ross, James T Stull, et al. (2002) 2002. “Overview of the Alliance for Cellular Signaling.”. Nature 420 (6916): 703-6.
    Reference Link
  • Ghersi, Dario, and Mona Singh. (2014) 2014. “MolBLOCKS: Decomposing Small Molecule Sets and Uncovering Enriched Fragments.”. Bioinformatics 30 (14): 2081-3.
    Reference Link
  • Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Long-Range Signal Transmission in Autocrine Relays.”. Biophys J 84 (2 Pt 1): 883-96.
    Reference Link
  • Berezhkovskii, Alexander M, Lazaros Batsilas, and Stanislav Y Shvartsman. (2004) 2004. “Ligand Trapping in Epithelial Layers and Cell Cultures.”. Biophys Chem 107 (3): 221-7.
    Reference Link
  • Monine, Michael I, Alexander M Berezhkovskii, Elizabeth J Joslin, Steven Wiley, Douglas A Lauffenburger, and Stanislav Y Shvartsman. (2005) 2005. “Ligand Accumulation in Autocrine Cell Cultures.”. Biophys J 88 (4): 2384-90.
    Reference Link
  • Neumann, Silke, Nikita Vladimirov, Anna K Krembel, Ned S Wingreen, and Victor Sourjik. 2014. “Imprecision of Adaptation in Escherichia Coli Chemotaxis.”. PLoS One 9 (1): e84904.
    Reference Link
  • Endres, Robert G, Olga Oleksiuk, Clinton H Hansen, Yigal Meir, Victor Sourjik, and Ned S Wingreen. 2008. “Variable Sizes of Escherichia Coli Chemoreceptor Signaling Teams.”. Mol Syst Biol 4: 211.
    Reference Link
  • Neumann, Silke, Clinton H Hansen, Ned S Wingreen, and Victor Sourjik. (2010) 2010. “Differences in Signalling by Directly and Indirectly Binding Ligands in Bacterial Chemotaxis.”. EMBO J 29 (20): 3484-95.
    Reference Link
  • Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Transitions in the Model of Epithelial Patterning.”. Dev Dyn 226 (1): 155-9.
    Reference Link
  • Bialek, William, and Sima Setayeshgar. (2008) 2008. “Cooperativity, Sensitivity, and Noise in Biochemical Signaling.”. Phys Rev Lett 100 (25): 258101.
    Reference Link
  • Coppey, Mathieu, Alexander M Berezhkovskii, Stuart C Sealfon, and Stanislav Y Shvartsman. (2007) 2007. “Time and Length Scales of Autocrine Signals in Three Dimensions.”. Biophys J 93 (6): 1917-22.
    Reference Link
  • Keymer, Juan E, Robert G Endres, Monica Skoge, Yigal Meir, and Ned S Wingreen. (2006) 2006. “Chemosensing in Escherichia Coli: Two Regimes of Two-State Receptors.”. Proc Natl Acad Sci U S A 103 (6): 1786-91.
    Reference Link
  • Roose, Jeroen P, Maximilian Diehn, Michael G Tomlinson, Joseph Lin, Ash A Alizadeh, David Botstein, Patrick O Brown, and Arthur Weiss. (2003) 2003. “T Cell Receptor-Independent Basal Signaling via Erk and Abl Kinases Suppresses RAG Gene Expression.”. PLoS Biol 1 (2): E53.
    Reference Link
  • Klein, Daryl E, Valerie M Nappi, Gregory T Reeves, Stanislav Y Shvartsman, and Mark A Lemmon. (2004) 2004. “Argos Inhibits Epidermal Growth Factor Receptor Signalling by Ligand Sequestration.”. Nature 430 (7003): 1040-4.
    Reference Link
  • McIsaac, Scott, Patrick A Gibney, Sunil S Chandran, Kirsten R Benjamin, and David Botstein. (2014) 2014. “Synthetic Biology Tools for Programming Gene Expression Without Nutritional Perturbations in Saccharomyces Cerevisiae.”. Nucleic Acids Res 42 (6): e48.
    Reference Link
  • Endres, Robert G, and Ned S Wingreen. (2009) 2009. “Accuracy of Direct Gradient Sensing by Cell-Surface Receptors.”. Prog Biophys Mol Biol 100 (1-3): 33-9.
    Reference Link
  • Batsilas, Lazaros, Alexander M Berezhkovskii, and Stanislav Y Shvartsman. (2003) 2003. “Stochastic Model of Autocrine and Paracrine Signals in Cell Culture Assays.”. Biophys J 85 (6): 3659-65.
    Reference Link
  • Kobren, Shilpa Nadimpalli, and Mona Singh. (2019) 2019. “Systematic Domain-Based Aggregation of Protein Structures Highlights DNA-, RNA- and Other Ligand-Binding Positions.”. Nucleic Acids Res 47 (2): 582-93. doi:10.1093/nar/gky1224.
    Reference Link
  • Bejsovec, A, and E Wieschaus. (1995) 1995. “Signaling Activities of the Drosophila Wingless Gene Are Separately Mutable and Appear to Be Transduced at the Cell Surface.”. Genetics 139 (1): 309-20.
    Reference Link
  • Goentoro, Lea A, Gregory T Reeves, Craig P Kowal, Luigi Martinelli, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantifying the Gurken Morphogen Gradient in Drosophila Oogenesis.”. Dev Cell 11 (2): 263-72.
    Reference Link
  • Ng, Wai-Leung, Yunzhou Wei, Lark J Perez, Jianping Cong, Tao Long, Matthew Koch, Martin F Semmelhack, Ned S Wingreen, and Bonnie L Bassler. (2010) 2010. “Probing Bacterial Transmembrane Histidine Kinase Receptor-Ligand Interactions With Natural and Synthetic Molecules.”. Proc Natl Acad Sci U S A 107 (12): 5575-80.
    Reference Link

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