Grimm, Oliver, Victoria Sanchez Zini, Yoosik Kim, Jordi Casanova, Stanislav Y Shvartsman, and Eric Wieschaus. (2012) 2012. “Torso RTK Controls Capicua Degradation by Changing Its Subcellular Localization.”. Development 139 (21): 3962-8. Reference Link
Markstein, Michele, Robert Zinzen, Peter Markstein, Ka-Ping Yee, Albert Erives, Angela Stathopoulos, and Michael Levine. (2004) 2004. “A Regulatory Code for Neurogenic Gene Expression in the Drosophila Embryo.”. Development 131 (10): 2387-94. Reference Link
Tepper, Ronald G, Jasmine M Ashraf, Rachel Kaletsky, Gunnar Kleemann, Coleen T Murphy, and Harmen J Bussemaker. (2013) 2013. “PQM-1 Complements DAF-16 As a Key Transcriptional Regulator of DAF-2-Mediated Development and Longevity.”. Cell 154 (3): 676-90. Reference Link
Krotov, Dmitry, Julien Dubuis, Thomas Gregor, and William Bialek. (2014) 2014. “Morphogenesis at Criticality.”. Proc Natl Acad Sci U S A 111 (10): 3683-8. Reference Link
Farley, Emma, and Michael Levine. (2012) 2012. “HOT DNAs: A Novel Class of Developmental Enhancers.”. Genes Dev 26 (9): 873-6. Reference Link
Shvartsman, Stanislav Y, Mathieu Coppey, and Alexander M Berezhkovskii. (2008) 2008. “Dynamics of Maternal Morphogen Gradients in Drosophila.”. Curr Opin Genet Dev 18 (4): 342-7. Reference Link
Cande, Jessica Doran, Yury Goltsev, and Michael S Levine. (2009) 2009. “Conservation of Enhancer Location in Divergent Insects.”. Proc Natl Acad Sci U S A 106 (34): 14414-9. Reference Link
Zhou, Jian, Ignacio E Schor, Victoria Yao, Chandra L Theesfeld, Raquel Marco-Ferreres, Alicja Tadych, Eileen E M Furlong, and Olga G Troyanskaya. (2019) 2019. “Accurate Genome-Wide Predictions of Spatio-Temporal Gene Expression During Embryonic Development.”. PLoS Genet 15 (9): e1008382. doi:10.1371/journal.pgen.1008382. Reference Link
Osterfield, Miriam, XinXin Du, Trudi Schüpbach, Eric Wieschaus, and Stanislav Y Shvartsman. (2013) 2013. “Three-Dimensional Epithelial Morphogenesis in the Developing Drosophila Egg.”. Dev Cell 24 (4): 400-10. Reference Link
Chopra, Vivek S, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Regulation of Hox Gene Activity by Transcriptional Elongation in Drosophila.”. Curr Biol 19 (8): 688-93. Reference Link
Dubuis, Julien, Gašper Tkačik, Eric F Wieschaus, Thomas Gregor, and William Bialek. (2013) 2013. “Positional Information, in Bits.”. Proc Natl Acad Sci U S A 110 (41): 16301-8. Reference Link
Bothma, Jacques P, Michael Levine, and Alistair N Boettiger. (2010) 2010. “Morphogen Gradients: Limits to Signaling or Limits to Measurement?”. Curr Biol 20 (5). Reference Link
Lakhina, Vanisha, Rachel Arey, Rachel Kaletsky, Amanda Kauffman, Geneva Stein, William Keyes, Daniel Xu, and Coleen T Murphy. (2015) 2015. “Genome-Wide Functional Analysis of CREB Long-Term Memory-Dependent Transcription Reveals Distinct Basal and Memory Gene Expression Programs.”. Neuron 85 (2): 330-45. Reference Link
Bothma, Jacques P, Hernan G Garcia, Emilia Esposito, Gavin Schlissel, Thomas Gregor, and Michael Levine. (2014) 2014. “Dynamic Regulation of Eve Stripe 2 Expression Reveals Transcriptional Bursts in Living Drosophila Embryos.”. Proc Natl Acad Sci U S A 111 (29): 10598-603. Reference Link
Kanodia, Jitendra S, Yoosik Kim, Raju Tomer, Zia Khan, Kwanghun Chung, John D Storey, Hang Lu, Philipp J Keller, and Stanislav Y Shvartsman. (2011) 2011. “A Computational Statistics Approach for Estimating the Spatial Range of Morphogen Gradients.”. Development 138 (22): 4867-74. Reference Link
Shin, M K, J M Levorse, R S Ingram, and S M Tilghman. (1999) 1999. “The Temporal Requirement for Endothelin Receptor-B Signalling During Neural Crest Development.”. Nature 402 (6761): 496-501. Reference Link
Ahmed, Yashi, S Hayashi, A Levine, and E Wieschaus. (1998) 1998. “Regulation of Armadillo by a Drosophila APC Inhibits Neuronal Apoptosis During Retinal Development.”. Cell 93 (7): 1171-82. Reference Link
Goodliffe, Julie M, Eric Wieschaus, and Michael D Cole. (2005) 2005. “Polycomb Mediates Myc Autorepression and Its Transcriptional Control of Many Loci in Drosophila.”. Genes Dev 19 (24): 2941-6. Reference Link
Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Microinjection of Morpholino Oligos and RNAs in Sea Squirt (Ciona) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5347. Reference Link
Murphy, Coleen T, Steven A McCarroll, Cornelia I Bargmann, Andrew Fraser, Ravi S Kamath, Julie Ahringer, Hao Li, and Cynthia Kenyon. (2003) 2003. “Genes That Act Downstream of DAF-16 to Influence the Lifespan of Caenorhabditis Elegans.”. Nature 424 (6946): 277-83. Reference Link
Liu, Feng, Alexander H Morrison, and Thomas Gregor. (2013) 2013. “Dynamic Interpretation of Maternal Inputs by the Drosophila Segmentation Gene Network.”. Proc Natl Acad Sci U S A 110 (17): 6724-9. Reference Link
Biemar, Frédéric, David A Nix, Jessica Piel, Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, Robert Manak, and Michael S Levine. (2006) 2006. “Comprehensive Identification of Drosophila Dorsal-Ventral Patterning Genes Using a Whole-Genome Tiling Array.”. Proc Natl Acad Sci U S A 103 (34): 12763-8. Reference Link
Rushlow, Christine A, and Stanislav Y Shvartsman. (2012) 2012. “Temporal Dynamics, Spatial Range, and Transcriptional Interpretation of the Dorsal Morphogen Gradient.”. Curr Opin Genet Dev 22 (6): 542-6. Reference Link
Hunter, C, and E Wieschaus. (2000) 2000. “Regulated Expression of Nullo Is Required for the Formation of Distinct Apical and Basal Adherens Junctions in the Drosophila Blastoderm.”. J Cell Biol 150 (2): 391-401. Reference Link
Levine, Michael. (2011) 2011. “Paused RNA Polymerase II As a Developmental Checkpoint.”. Cell 145 (4): 502-11. Reference Link
Lagha, Mounia, Jacques P Bothma, and Michael Levine. (2012) 2012. “Mechanisms of Transcriptional Precision in Animal Development.”. Trends Genet 28 (8): 409-16. Reference Link
Levine, Michael, and Eric H Davidson. (2005) 2005. “Gene Regulatory Networks for Development.”. Proc Natl Acad Sci U S A 102 (14): 4936-42. Reference Link
Papatsenko, Dmitri, and Michael S Levine. (2008) 2008. “Dual Regulation by the Hunchback Gradient in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 105 (8): 2901-6. Reference Link
Kavousanakis, Michail E, Jitendra S Kanodia, Yoosik Kim, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2010) 2010. “A Compartmental Model for the Bicoid Gradient.”. Dev Biol 345 (1): 12-7. Reference Link
Di Gregorio, Anna, Richard M Harland, Michael Levine, and Elena Silva Casey. (2002) 2002. “Tail Morphogenesis in the Ascidian, Ciona Intestinalis, Requires Cooperation Between Notochord and Muscle.”. Dev Biol 244 (2): 385-95. Reference Link
Pavan, W J, S Mac, M Cheng, and S M Tilghman. (1995) 1995. “Quantitative Trait Loci That Modify the Severity of Spotting in Piebald Mice.”. Genome Res 5 (1): 29-41. Reference Link
Lagha, Mounia, Jacques P Bothma, Emilia Esposito, Samuel Ng, Laura Stefanik, Chiahao Tsui, Jeffrey Johnston, et al. (2013) 2013. “Paused Pol II Coordinates Tissue Morphogenesis in the Drosophila Embryo.”. Cell 153 (5): 976-87. Reference Link
Shvartsman, Stanislav Y, and Ruth E Baker. (2012) 2012. “Mathematical Models of Morphogen Gradients and Their Effects on Gene Expression.”. Wiley Interdiscip Rev Dev Biol 1 (5): 715-30. Reference Link
Kim, Yoosik, María José Andreu, Bomyi Lim, Kwanghun Chung, Mark Terayama, Gerardo Jiménez, Celeste A Berg, Hang Lu, and Stanislav Y Shvartsman. (2011) 2011. “Gene Regulation by MAPK Substrate Competition.”. Dev Cell 20 (6): 880-7. Reference Link
Jaźwińska, A, N Kirov, E Wieschaus, S Roth, and C Rushlow. (1999) 1999. “The Drosophila Gene Brinker Reveals a Novel Mechanism of Dpp Target Gene Regulation.”. Cell 96 (4): 563-73. Reference Link
Yakoby, Nir, Christopher A Bristow, Danielle Gong, Xenia Schafer, Jessica Lembong, Jeremiah J Zartman, Marc S Halfon, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “A Combinatorial Code for Pattern Formation in Drosophila Oogenesis.”. Dev Cell 15 (5): 725-37. Reference Link
Lu, Rong, Florian Markowetz, Richard D Unwin, Jeffrey T Leek, Edoardo M Airoldi, Ben D MacArthur, Alexander Lachmann, et al. (2009) 2009. “Systems-Level Dynamic Analyses of Fate Change in Murine Embryonic Stem Cells.”. Nature 462 (7271): 358-62. Reference Link
Garcia, Hernan G, Mikhail Tikhonov, Albert Lin, and Thomas Gregor. (2013) 2013. “Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning.”. Curr Biol 23 (21): 2140-5. Reference Link
Cheung, Lily S, Trudi Schüpbach, and Stanislav Y Shvartsman. (2011) 2011. “Pattern Formation by Receptor Tyrosine Kinases: Analysis of the Gurken Gradient in Drosophila Oogenesis.”. Curr Opin Genet Dev 21 (6): 719-25. Reference Link
Kim, Yoosik, Mathieu Coppey, Rona Grossman, Leiore Ajuria, Gerardo Jiménez, Ze’ev Paroush, and Stanislav Y Shvartsman. (2010) 2010. “MAPK Substrate Competition Integrates Patterning Signals in the Drosophila Embryo.”. Curr Biol 20 (5): 446-51. Reference Link
Sandell, Lisa L, Xiao-Juan Guan, Robert Ingram, and Shirley M Tilghman. (2003) 2003. “Gatm, a Creatine Synthesis Enzyme, Is Imprinted in Mouse Placenta.”. Proc Natl Acad Sci U S A 100 (8): 4622-7. Reference Link
Yakoby, Nir, Jessica Lembong, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “Drosophila Eggshell Is Patterned by Sequential Action of Feedforward and Feedback Loops.”. Development 135 (2): 343-51. Reference Link
Cole, Susan E, John M Levorse, Shirley M Tilghman, and Thomas F Vogt. (2002) 2002. “Clock Regulatory Elements Control Cyclic Expression of Lunatic Fringe During Somitogenesis.”. Dev Cell 3 (1): 75-84. Reference Link
Boettiger, Alistair N, and Michael Levine. (2009) 2009. “Synchronous and Stochastic Patterns of Gene Activation in the Drosophila Embryo.”. Science 325 (5939): 471-3. Reference Link
Goentoro, Lea A, Nir Yakoby, Joseph Goodhouse, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantitative Analysis of the GAL4 UAS System in Drosophila Oogenesis.”. Genesis 44 (2): 66-74. Reference Link
Kanodia, Jitendra S, Hsiao-Lan Liang, Yoosik Kim, Bomyi Lim, Mei Zhan, Hang Lu, Christine A Rushlow, and Stanislav Y Shvartsman. (2012) 2012. “Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo.”. Biophys J 102 (3): 427-33. Reference Link
Calhoun, Vincent C, and Michael Levine. (2003) 2003. “Long-Range Enhancer-Promoter Interactions in the Scr-Antp Interval of the Drosophila Antennapedia Complex.”. Proc Natl Acad Sci U S A 100 (17): 9878-83. Reference Link
Shi, Weiyang, Sara M Peyrot, Edwin Munro, and Michael Levine. (2009) 2009. “FGF3 in the Floor Plate Directs Notochord Convergent Extension in the Ciona Tadpole.”. Development 136 (1): 23-8. Reference Link
Ahmed, Yashi, Ali Nouri, and Eric Wieschaus. (2002) 2002. “Drosophila Apc1 and Apc2 Regulate Wingless Transduction Throughout Development.”. Development 129 (7): 1751-62. Reference Link
Hark, A T, and S M Tilghman. (1998) 1998. “Chromatin Conformation of the H19 Epigenetic Mark.”. Hum Mol Genet 7 (12): 1979-85. Reference Link