Schejter, E D, L S Rose, M A Postner, and E Wieschaus. 1992. “Role of the Zygotic Genome in the Restructuring of the Actin Cytoskeleton at the Cycle-14 Transition During Drosophila Embryogenesis.”. Cold Spring Harb Symp Quant Biol 57: 653-9.

Linn, Sabine C, Rob B West, Jonathan R Pollack, Shirley Zhu, Tina Hernandez-Boussard, Torsten O Nielsen, Brian P Rubin, et al. (2003) 2003. “Gene Expression Patterns and Gene Copy Number Changes in Dermatofibrosarcoma Protuberans.”. Am J Pathol 163 (6): 2383-95.

Lossos, Izidore S, Debra K Czerwinski, Ash A Alizadeh, Mark A Wechser, Rob Tibshirani, David Botstein, and Ronald Levy. (2004) 2004. “Prediction of Survival in Diffuse Large-B-Cell Lymphoma Based on the Expression of Six Genes.”. N Engl J Med 350 (18): 1828-37.

Irvine, K D, and E Wieschaus. (1994) 1994. “Fringe, a Boundary-Specific Signaling Molecule, Mediates Interactions Between Dorsal and Ventral Cells During Drosophila Wing Development.”. Cell 79 (4): 595-606.

Zemel, S, M S Bartolomei, and S M Tilghman. (1992) 1992. “Physical Linkage of Two Mammalian Imprinted Genes, H19 and Insulin-Like Growth Factor 2.”. Nat Genet 2 (1): 61-5.

Rauskolb, C, K M Smith, M Peifer, and E Wieschaus. (1995) 1995. “Extradenticle Determines Segmental Identities Throughout Drosophila Development.”. Development 121 (11): 3663-73.

Tyner, A L, R Godbout, R S Compton, and S M Tilghman. (1990) 1990. “The Ontogeny of Alpha-Fetoprotein Gene Expression in the Mouse Gastrointestinal Tract.”. J Cell Biol 110 (4): 915-27.

Mehta, Pankaj, Ranjan Mukhopadhyay, and Ned S Wingreen. 2008. “Exponential Sensitivity of Noise-Driven Switching in Genetic Networks.”. Phys Biol 5 (2): 026005.

Postner, M A, and E F Wieschaus. (1994) 1994. “The Nullo Protein Is a Component of the Actin-Myosin Network That Mediates Cellularization in Drosophila Melanogaster Embryos.”. J Cell Sci 107 ( Pt 7): 1863-73.

Hibbs, Matthew A, David C Hess, Chad L Myers, Curtis Huttenhower, Kai Li, and Olga G Troyanskaya. (2007) 2007. “Exploring the Functional Landscape of Gene Expression: Directed Search of Large Microarray Compendia.”. Bioinformatics 23 (20): 2692-9.

Armand, P, A C Knapp, A J Hirsch, E F Wieschaus, and M D Cole. (1994) 1994. “A Novel Basic Helix-Loop-Helix Protein Is Expressed in Muscle Attachment Sites of the Drosophila Epidermis.”. Mol Cell Biol 14 (6): 4145-54.

Brunkow, M E, and S M Tilghman. (1991) 1991. “Ectopic Expression of the H19 Gene in Mice Causes Prenatal Lethality.”. Genes Dev 5 (6): 1092-101.

Troyanskaya, Olga G, Mitchell E Garber, Patrick O Brown, David Botstein, and Russ B Altman. (2002) 2002. “Nonparametric Methods for Identifying Differentially Expressed Genes in Microarray Data.”. Bioinformatics 18 (11): 1454-61.

Garber, M E, O G Troyanskaya, K Schluens, S Petersen, Z Thaesler, M Pacyna-Gengelbach, M van de Rijn, et al. (2001) 2001. “Diversity of Gene Expression in Adenocarcinoma of the Lung.”. Proc Natl Acad Sci U S A 98 (24): 13784-9.

Huttenhower, Curtis, Avi I Flamholz, Jessica N Landis, Sauhard Sahi, Chad L Myers, Kellen L Olszewski, Matthew A Hibbs, Nathan O Siemers, Olga G Troyanskaya, and Hilary A Coller. 2007. “Nearest Neighbor Networks: Clustering Expression Data Based on Gene Neighborhoods.”. BMC Bioinformatics 8: 250.

Pfeifer, K, and S M Tilghman. (1994) 1994. “Allele-Specific Gene Expression in Mammals: The Curious Case of the Imprinted RNAs.”. Genes Dev 8 (16): 1867-74.

Troyanskaya, O, M Cantor, G Sherlock, P Brown, T Hastie, R Tibshirani, D Botstein, and Russ B Altman. (2001) 2001. “Missing Value Estimation Methods for DNA Microarrays.”. Bioinformatics 17 (6): 520-5.

Kocher, Sarah D, Jennifer M Tsuruda, Joshua D Gibson, Christine M Emore, Miguel E Arechavaleta-Velasco, David C Queller, Joan E Strassmann, et al. (2015) 2015. “A Search for Parent-of-Origin Effects on Honey Bee Gene Expression.”. G3 (Bethesda) 5 (8): 1657-62. doi:10.1534/g3.115.017814.

Peifer, M, D Sweeton, M Casey, and E Wieschaus. (1994) 1994. “Wingless Signal and Zeste-White 3 Kinase Trigger Opposing Changes in the Intracellular Distribution of Armadillo.”. Development 120 (2): 369-80.

Kurihara, L J, T Kikuchi, K Wada, and S M Tilghman. (2001) 2001. “Loss of Uch-L1 and Uch-L3 Leads to Neurodegeneration, Posterior Paralysis and Dysphagia.”. Hum Mol Genet 10 (18): 1963-70.

McKee, Sarah E, Sisi Zhang, Li Chen, Joshua D Rabinowitz, and Teresa M Reyes. (2018) 2018. “Perinatal High Fat Diet and Early Life Methyl Donor Supplementation Alter One Carbon Metabolism and DNA Methylation in the Brain.”. J Neurochem 145 (5): 362-73. doi:10.1111/jnc.14319.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Whole-Mount in Situ Hybridization on Sea Squirt (Ciona Intestinalis) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5348.

Jones, Beverly K, John Levorse, and Shirley M Tilghman. (2002) 2002. “A Human H19 Transgene Exhibits Impaired Paternal-Specific Imprint Acquisition and Maintenance in Mice.”. Hum Mol Genet 11 (4): 411-8.

Zhou, Jian, Chandra L Theesfeld, Kevin Yao, Kathleen M Chen, Aaron K Wong, and Olga G Troyanskaya. (2018) 2018. “Deep Learning Sequence-Based Ab Initio Prediction of Variant Effects on Expression and Disease Risk.”. Nat Genet 50 (8): 1171-79. doi:10.1038/s41588-018-0160-6.

Myers, Chad L, Xing Chen, and Olga G Troyanskaya. 2005. “Visualization-Based Discovery and Analysis of Genomic Aberrations in Microarray Data.”. BMC Bioinformatics 6: 146.

Brauer, Matthew J, Alok J Saldanha, Kara Dolinski, and David Botstein. (2005) 2005. “Homeostatic Adjustment and Metabolic Remodeling in Glucose-Limited Yeast Cultures.”. Mol Biol Cell 16 (5): 2503-17.

Zhou, Jian, Christopher Y Park, Chandra L Theesfeld, Aaron K Wong, Yuan Yuan, Claudia Scheckel, John J Fak, et al. (2019) 2019. “Whole-Genome Deep-Learning Analysis Identifies Contribution of Noncoding Mutations to Autism Risk.”. Nat Genet 51 (6): 973-80. doi:10.1038/s41588-019-0420-0.

Cowden, John, and Michael Levine. (2003) 2003. “Ventral Dominance Governs Sequential Patterns of Gene Expression across the Dorsal-Ventral Axis of the Neuroectoderm in the Drosophila Embryo.”. Dev Biol 262 (2): 335-49.

Massouras, Andreas, Sebastian M Waszak, Monica Albarca-Aguilera, Korneel Hens, Wiebke Holcombe, Julien Ayroles, Emmanouil T Dermitzakis, et al. 2012. “Genomic Variation and Its Impact on Gene Expression in Drosophila Melanogaster.”. PLoS Genet 8 (11): e1003055.

Benson, Kiara K, Wenxiang Hu, Angela H Weller, Alexis H Bennett, Eric R Chen, Sumeet A Khetarpal, Satoshi Yoshino, et al. (2019) 2019. “Natural Human Genetic Variation Determines Basal and Inducible Expression of , an Obesity-Associated Gene.”. Proc Natl Acad Sci U S A 116 (46): 23232-42. doi:10.1073/pnas.1913199116.

Jumbo-Lucioni, Patricia, Julien Ayroles, Michelle Chambers, Katherine W Jordan, Jeff Leips, Trudy Fc Mackay, and Maria De Luca. 2010. “Systems Genetics Analysis of Body Weight and Energy Metabolism Traits in Drosophila Melanogaster.”. BMC Genomics 11: 297.

Vrana, P B, P G Matteson, J Schmidt V, R S Ingram, A Joyce, K L Prince, M J Dewey, and S M Tilghman. (2001) 2001. “Genomic Imprinting of a Placental Lactogen Gene in Peromyscus.”. Dev Genes Evol 211 (11): 523-32.

Boldrick, Jennifer C, Ash A Alizadeh, Maximilian Diehn, Sandrine Dudoit, Chih Long Liu, Christopher E Belcher, David Botstein, Louis M Staudt, Patrick O Brown, and David A Relman. (2002) 2002. “Stereotyped and Specific Gene Expression Programs in Human Innate Immune Responses to Bacteria.”. Proc Natl Acad Sci U S A 99 (2): 972-7.

Ayroles, Julien, Kimberly A Hughes, Kevin C Rowe, Melissa M Reedy, Sandra L Rodriguez-Zas, Jenny M Drnevich, Carla E Cáceres, and Ken N Paige. (2009) 2009. “A Genomewide Assessment of Inbreeding Depression: Gene Number, Function, and Mode of Action.”. Conserv Biol 23 (4): 920-30.

Bejsovec, A, and E Wieschaus. (1995) 1995. “Signaling Activities of the Drosophila Wingless Gene Are Separately Mutable and Appear to Be Transduced at the Cell Surface.”. Genetics 139 (1): 309-20.

Grosshans, J, and E Wieschaus. (2000) 2000. “A Genetic Link Between Morphogenesis and Cell Division During Formation of the Ventral Furrow in Drosophila.”. Cell 101 (5): 523-31.