Munger, Joshua, Sunil U Bajad, Hilary A Coller, Thomas Shenk, and Joshua D Rabinowitz. (2006) 2006. “Dynamics of the Cellular Metabolome During Human Cytomegalovirus Infection.”. PLoS Pathog 2 (12): e132.

Chang, Howard Y, Jen-Tsan Chi, Sandrine Dudoit, Chanda Bondre, Matt van de Rijn, David Botstein, and Patrick O Brown. (2002) 2002. “Diversity, Topographic Differentiation, and Positional Memory in Human Fibroblasts.”. Proc Natl Acad Sci U S A 99 (20): 12877-82.

Murray, John Isaac, Michael L Whitfield, Nathan D Trinklein, Richard M Myers, Patrick O Brown, and David Botstein. (2004) 2004. “Diverse and Specific Gene Expression Responses to Stresses in Cultured Human Cells.”. Mol Biol Cell 15 (5): 2361-74.

Vastag, Livia, Emre Koyuncu, Sarah L Grady, Thomas E Shenk, and Joshua D Rabinowitz. (2011) 2011. “Divergent Effects of Human Cytomegalovirus and Herpes Simplex Virus-1 on Cellular Metabolism.”. PLoS Pathog 7 (7): e1002124.

Slavov, Nikolai, Edoardo M Airoldi, Alexander van Oudenaarden, and David Botstein. (2012) 2012. “A Conserved Cell Growth Cycle Can Account for the Environmental Stress Responses of Divergent Eukaryotes.”. Mol Biol Cell 23 (10): 1986-97.

Smith, Kevin S, Sumit K Chanda, Merel Lingbeek, Douglas T Ross, David Botstein, Maarten van Lohuizen, and Michael L Cleary. (2003) 2003. “Bmi-1 Regulation of INK4A-ARF Is a Downstream Requirement for Transformation of Hematopoietic Progenitors by E2a-Pbx1.”. Mol Cell 12 (2): 393-400.

Grady, Sarah L, John G Purdy, Joshua D Rabinowitz, and Thomas Shenk. (2013) 2013. “Argininosuccinate Synthetase 1 Depletion Produces a Metabolic State Conducive to Herpes Simplex Virus 1 Infection.”. Proc Natl Acad Sci U S A 110 (51).

Nofal, Michel, Kevin Zhang, Seunghun Han, and Joshua D Rabinowitz. (2017) 2017. “MTOR Inhibition Restores Amino Acid Balance in Cells Dependent on Catabolism of Extracellular Protein.”. Mol Cell 67 (6): 936-946.e5. doi:10.1016/j.molcel.2017.08.011.

Liu, Sean T H, Ronit Sharon-Friling, Pavlina Ivanova, Stephen B Milne, David S Myers, Joshua D Rabinowitz, Alex Brown, and Thomas Shenk. (2011) 2011. “Synaptic Vesicle-Like Lipidome of Human Cytomegalovirus Virions Reveals a Role for SNARE Machinery in Virion Egress.”. Proc Natl Acad Sci U S A 108 (31): 12869-74.

Trinklein, Nathan D, John I Murray, Sara J Hartman, David Botstein, and Richard M Myers. (2004) 2004. “The Role of Heat Shock Transcription Factor 1 in the Genome-Wide Regulation of the Mammalian Heat Shock Response.”. Mol Biol Cell 15 (3): 1254-61.

Lemons, Johanna M S, Xiao-Jiang Feng, Bryson D Bennett, Aster Legesse-Miller, Elizabeth L Johnson, Irene Raitman, Elizabeth A Pollina, Herschel A Rabitz, Joshua D Rabinowitz, and Hilary A Coller. 2010. “Quiescent Fibroblasts Exhibit High Metabolic Activity.”. PLoS Biol 8 (10): e1000514.

Chang, Howard Y, Julie B Sneddon, Ash A Alizadeh, Ruchira Sood, Rob B West, Kelli Montgomery, Jen-Tsan Chi, Matt van de Rijn, David Botstein, and Patrick O Brown. (2004) 2004. “Gene Expression Signature of Fibroblast Serum Response Predicts Human Cancer Progression: Similarities Between Tumors and Wounds.”. PLoS Biol 2 (2): E7.

Huttenhower, Curtis, Erin M Haley, Matthew A Hibbs, Vanessa Dumeaux, Daniel R Barrett, Hilary A Coller, and Olga G Troyanskaya. (2009) 2009. “Exploring the Human Genome With Functional Maps.”. Genome Res 19 (6): 1093-106.