Sourjik, Victor, and Ned S Wingreen. (2012) 2012. “Responding to Chemical Gradients: Bacterial Chemotaxis.”. Curr Opin Cell Biol 24 (2): 262-8.

Mukhopadhyay, Ranjan, Kerwyn Casey Huang, and Ned S Wingreen. (2008) 2008. “Lipid Localization in Bacterial Cells through Curvature-Mediated Microphase Separation.”. Biophys J 95 (3): 1034-49.

Neumann, Silke, Clinton H Hansen, Ned S Wingreen, and Victor Sourjik. (2010) 2010. “Differences in Signalling by Directly and Indirectly Binding Ligands in Bacterial Chemotaxis.”. EMBO J 29 (20): 3484-95.

Goyal, Sidhartha, Jie Yuan, Thomas Chen, Joshua D Rabinowitz, and Ned S Wingreen. (2010) 2010. “Achieving Optimal Growth through Product Feedback Inhibition in Metabolism.”. PLoS Comput Biol 6 (6): e1000802.

Goodarzi, Hani, Bryson D Bennett, Sasan Amini, Marshall L Reaves, Alison K Hottes, Joshua D Rabinowitz, and Saeed Tavazoie. (2010) 2010. “Regulatory and Metabolic Rewiring During Laboratory Evolution of Ethanol Tolerance in E. Coli.”. Mol Syst Biol 6: 378.

Yuan, Jie, William U Fowler, Elizabeth Kimball, Wenyun Lu, and Joshua D Rabinowitz. (2006) 2006. “Kinetic Flux Profiling of Nitrogen Assimilation in Escherichia Coli.”. Nat Chem Biol 2 (10): 529-30.

Huang, Kerwyn Casey, Ranjan Mukhopadhyay, and Ned S Wingreen. (2006) 2006. “A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles.”. PLoS Comput Biol 2 (11): e151.

Khan, Zia, Sasan Amini, Joshua S Bloom, Cristian Ruse, Amy A Caudy, Leonid Kruglyak, Mona Singh, David H Perlman, and Saeed Tavazoie. 2011. “Accurate Proteome-Wide Protein Quantification from High-Resolution 15N Mass Spectra.”. Genome Biol 12 (12): R122.

Skoge, Monica L, Robert G Endres, and Ned S Wingreen. (2006) 2006. “Receptor-Receptor Coupling in Bacterial Chemotaxis: Evidence for Strongly Coupled Clusters.”. Biophys J 90 (12): 4317-26.

Yuan, Jie, Bryson D Bennett, and Joshua D Rabinowitz. 2008. “Kinetic Flux Profiling for Quantitation of Cellular Metabolic Fluxes.”. Nat Protoc 3 (8): 1328-40.

Jim, Kam, Kush Parmar, Mona Singh, and Saeed Tavazoie. (2004) 2004. “A Cross-Genomic Approach for Systematic Mapping of Phenotypic Traits to Genes.”. Genome Res 14 (1): 109-15.

Bennett, Bryson D, Jie Yuan, Elizabeth H Kimball, and Joshua D Rabinowitz. 2008. “Absolute Quantitation of Intracellular Metabolite Concentrations by an Isotope Ratio-Based Approach.”. Nat Protoc 3 (8): 1299-311.

Reaves, Marshall Louis, Brian D Young, Aaron M Hosios, Yi-Fan Xu, and Joshua D Rabinowitz. (2013) 2013. “Pyrimidine Homeostasis Is Accomplished by Directed Overflow Metabolism.”. Nature 500 (7461): 237-41.

Ureta, Alejandro R, Robert G Endres, Ned S Wingreen, and Thomas J Silhavy. (2007) 2007. “Kinetic Analysis of the Assembly of the Outer Membrane Protein LamB in Escherichia Coli Mutants Each Lacking a Secretion or Targeting Factor in a Different Cellular Compartment.”. J Bacteriol 189 (2): 446-54.

Hunter, Christine, Patricia Sung, Eyal D Schejter, and Eric Wieschaus. (2002) 2002. “Conserved Domains of the Nullo Protein Required for Cell-Surface Localization and Formation of Adherens Junctions.”. Mol Biol Cell 13 (1): 146-57.

Bennett, Bryson D, Elizabeth H Kimball, Melissa Gao, Robin Osterhout, Stephen J Van Dien, and Joshua D Rabinowitz. (2009) 2009. “Absolute Metabolite Concentrations and Implied Enzyme Active Site Occupancy in Escherichia Coli.”. Nat Chem Biol 5 (8): 593-9.

Guberman, Jonathan M, Allison Fay, Jonathan Dworkin, Ned S Wingreen, and Zemer Gitai. (2008) 2008. “PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution.”. PLoS Comput Biol 4 (11): e1000233.

Lu, Wenyun, Yun Kyung Kwon, and Joshua D Rabinowitz. (2007) 2007. “Isotope Ratio-Based Profiling of Microbial Folates.”. J Am Soc Mass Spectrom 18 (5): 898-909.

Osada, Robert, Elena Zaslavsky, and Mona Singh. (2004) 2004. “Comparative Analysis of Methods for Representing and Searching for Transcription Factor Binding Sites.”. Bioinformatics 20 (18): 3516-25.

Morgenstein, Randy M, Benjamin P Bratton, Jeffrey P Nguyen, Nikolay Ouzounov, Joshua W Shaevitz, and Zemer Gitai. (2015) 2015. “RodZ Links MreB to Cell Wall Synthesis to Mediate MreB Rotation and Robust Morphogenesis.”. Proc Natl Acad Sci U S A 112 (40): 12510-5. doi:10.1073/pnas.1509610112.

Doucette, Christopher D, David J Schwab, Ned S Wingreen, and Joshua D Rabinowitz. (2011) 2011. “α-Ketoglutarate Coordinates Carbon and Nitrogen Utilization via Enzyme I Inhibition.”. Nat Chem Biol 7 (12): 894-901.

Dwyer, Robert S, Dante P Ricci, Lucy J Colwell, Thomas J Silhavy, and Ned S Wingreen. (2013) 2013. “Predicting Functionally Informative Mutations in Escherichia Coli BamA Using Evolutionary Covariance Analysis.”. Genetics 195 (2): 443-55.

Neumann, Silke, Nikita Vladimirov, Anna K Krembel, Ned S Wingreen, and Victor Sourjik. 2014. “Imprecision of Adaptation in Escherichia Coli Chemotaxis.”. PLoS One 9 (1): e84904.

Endres, Robert G, Joseph J Falke, and Ned S Wingreen. (2007) 2007. “Chemotaxis Receptor Complexes: From Signaling to Assembly.”. PLoS Comput Biol 3 (7): e150.

Ouzounov, Nikolay, Jeffrey P Nguyen, Benjamin P Bratton, David Jacobowitz, Zemer Gitai, and Joshua W Shaevitz. (2016) 2016. “MreB Orientation Correlates With Cell Diameter in Escherichia Coli.”. Biophys J 111 (5): 1035-43. doi:10.1016/j.bpj.2016.07.017.

Endres, Robert G, Olga Oleksiuk, Clinton H Hansen, Yigal Meir, Victor Sourjik, and Ned S Wingreen. 2008. “Variable Sizes of Escherichia Coli Chemoreceptor Signaling Teams.”. Mol Syst Biol 4: 211.

Meir, Yigal, Vladimir Jakovljevic, Olga Oleksiuk, Victor Sourjik, and Ned S Wingreen. (2010) 2010. “Precision and Kinetics of Adaptation in Bacterial Chemotaxis.”. Biophys J 99 (9): 2766-74.

Kimball, Elizabeth, and Joshua D Rabinowitz. (2006) 2006. “Identifying Decomposition Products in Extracts of Cellular Metabolites.”. Anal Biochem 358 (2): 273-80.

Hansen, Clinton H, Robert G Endres, and Ned S Wingreen. (2008) 2008. “Chemotaxis in Escherichia Coli: A Molecular Model for Robust Precise Adaptation.”. PLoS Comput Biol 4 (1): e1.

Liu, George S, Benjamin P Bratton, Zemer Gitai, and Joshua W Shaevitz. 2017. “The Effect of Antibiotics on Protein Diffusion in the Escherichia Coli Cytoplasmic Membrane.”. PLoS One 12 (10): e0185810. doi:10.1371/journal.pone.0185810.

Sourjik, Victor, and Ned S Wingreen. (2007) 2007. “Turning to the Cold.”. Nat Cell Biol 9 (9): 1029-31.

Pilizota, Teuta, and Joshua W Shaevitz. (2013) 2013. “Plasmolysis and Cell Shape Depend on Solute Outer-Membrane Permeability During Hyperosmotic Shock in E. Coli.”. Biophys J 104 (12): 2733-42.

Wang, Siyuan, Leon Furchtgott, Kerwyn Casey Huang, and Joshua W Shaevitz. (2012) 2012. “Helical Insertion of Peptidoglycan Produces Chiral Ordering of the Bacterial Cell Wall.”. Proc Natl Acad Sci U S A 109 (10).

Keymer, Juan E, Robert G Endres, Monica Skoge, Yigal Meir, and Ned S Wingreen. (2006) 2006. “Chemosensing in Escherichia Coli: Two Regimes of Two-State Receptors.”. Proc Natl Acad Sci U S A 103 (6): 1786-91.

Li, Sophia Hsin-Jung, Zhiyuan Li, Junyoung O Park, Christopher G King, Joshua D Rabinowitz, Ned S Wingreen, and Zemer Gitai. (2018) 2018. “Escherichia Coli Translation Strategies Differ across Carbon, Nitrogen and Phosphorus Limitation Conditions.”. Nat Microbiol 3 (8): 939-47. doi:10.1038/s41564-018-0199-2.

Oleksiuk, Olga, Vladimir Jakovljevic, Nikita Vladimirov, Ricardo Carvalho, Eli Paster, William S Ryu, Yigal Meir, Ned S Wingreen, Markus Kollmann, and Victor Sourjik. (2011) 2011. “Thermal Robustness of Signaling in Bacterial Chemotaxis.”. Cell 145 (2): 312-21.

Abbondanzieri, Elio A, Joshua W Shaevitz, and Steven M Block. (2005) 2005. “Picocalorimetry of Transcription by RNA Polymerase.”. Biophys J 89 (6).

Pilizota, Teuta, and Joshua W Shaevitz. 2012. “Fast, Multiphase Volume Adaptation to Hyperosmotic Shock by Escherichia Coli.”. PLoS One 7 (4): e35205.

Rabinowitz, Joshua D. (2007) 2007. “Cellular Metabolomics of Escherchia Coli.”. Expert Rev Proteomics 4 (2): 187-98.

Boldrick, Jennifer C, Ash A Alizadeh, Maximilian Diehn, Sandrine Dudoit, Chih Long Liu, Christopher E Belcher, David Botstein, Louis M Staudt, Patrick O Brown, and David A Relman. (2002) 2002. “Stereotyped and Specific Gene Expression Programs in Human Innate Immune Responses to Bacteria.”. Proc Natl Acad Sci U S A 99 (2): 972-7.

Kulkarni, Rahul, V, Kerwyn Casey Huang, Morten Kloster, and Ned S Wingreen. (2004) 2004. “Pattern Formation Within Escherichia Coli: Diffusion, Membrane Attachment, and Self-Interaction of MinD Molecules.”. Phys Rev Lett 93 (22): 228103.

Hansen, Clinton H, Victor Sourjik, and Ned S Wingreen. (2010) 2010. “A Dynamic-Signaling-Team Model for Chemotaxis Receptors in Escherichia Coli.”. Proc Natl Acad Sci U S A 107 (40): 17170-5.

Huang, Kerwyn Casey, Ranjan Mukhopadhyay, Bingni Wen, Zemer Gitai, and Ned S Wingreen. (2008) 2008. “Cell Shape and Cell-Wall Organization in Gram-Negative Bacteria.”. Proc Natl Acad Sci U S A 105 (49): 19282-7.

Pritykin, Yuri, and Mona Singh. 2013. “Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks.”. PLoS Comput Biol 9 (10): e1003243.

Mora, Thierry, Howard Yu, and Ned S Wingreen. (2009) 2009. “Modeling Torque Versus Speed, Shot Noise, and Rotational Diffusion of the Bacterial Flagellar Motor.”. Phys Rev Lett 103 (24): 248102.

Huang, Kerwyn Casey, Yigal Meir, and Ned S Wingreen. (2003) 2003. “Dynamic Structures in Escherichia Coli: Spontaneous Formation of MinE Rings and MinD Polar Zones.”. Proc Natl Acad Sci U S A 100 (22): 12724-8.

DiMaggio, Peter A, Scott R McAllister, Christodoulos A Floudas, Xiao-Jiang Feng, Joshua D Rabinowitz, and Herschel A Rabitz. 2008. “Biclustering via Optimal Re-Ordering of Data Matrices in Systems Biology: Rigorous Methods and Comparative Studies.”. BMC Bioinformatics 9: 458.

Bajad, Sunil U, Wenyun Lu, Elizabeth H Kimball, Jie Yuan, Celeste Peterson, and Joshua D Rabinowitz. (2006) 2006. “Separation and Quantitation of Water Soluble Cellular Metabolites by Hydrophilic Interaction Chromatography-Tandem Mass Spectrometry.”. J Chromatogr A 1125 (1): 76-88.

Kidd, Philip B, and Ned S Wingreen. (2010) 2010. “Modeling the Role of Covalent Enzyme Modification in Escherichia Coli Nitrogen Metabolism.”. Phys Biol 7 (1): 016006.

Kwon, Yun Kyung, Wenyun Lu, Eugene Melamud, Nurussaba Khanam, Andrew Bognar, and Joshua D Rabinowitz. (2008) 2008. “A Domino Effect in Antifolate Drug Action in Escherichia Coli.”. Nat Chem Biol 4 (10): 602-8.