Stathopoulos, Angelike, and Michael Levine. (2002) 2002. “Dorsal Gradient Networks in the Drosophila Embryo.”. Dev Biol 246 (1): 57-67.

Sokac, Anna Marie, and Eric Wieschaus. (2008) 2008. “Zygotically Controlled F-Actin Establishes Cortical Compartments to Stabilize Furrows During Drosophila Cellularization.”. J Cell Sci 121 (Pt 11): 1815-24.

Lu, Xuemin, Jeff Drocco, and Eric F Wieschaus. (2010) 2010. “Cell Cycle Regulation via Inter-Nuclear Communication During the Early Embryonic Development of Drosophila Melanogaster.”. Cell Cycle 9 (14): 2908-10.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Whole-Mount in Situ Hybridization on Sea Squirt (Ciona Intestinalis) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5348.

Jiang, Peng, and Mona Singh. (2014) 2014. “CCAT: Combinatorial Code Analysis Tool for Transcriptional Regulation.”. Nucleic Acids Res 42 (5): 2833-47.

Stathopoulos, Angelike, Madeleine Van Drenth, Albert Erives, Michele Markstein, and Michael Levine. (2002) 2002. “Whole-Genome Analysis of Dorsal-Ventral Patterning in the Drosophila Embryo.”. Cell 111 (5): 687-701.

Christiaen, Lionel, Alberto Stolfi, and Michael Levine. (2010) 2010. “BMP Signaling Coordinates Gene Expression and Cell Migration During Precardiac Mesoderm Development.”. Dev Biol 340 (2): 179-87.

Bothma, Jacques P, Joe Magliocco, and Michael Levine. (2011) 2011. “The Snail Repressor Inhibits Release, Not Elongation, of Paused Pol II in the Drosophila Embryo.”. Curr Biol 21 (18): 1571-7.

Bothma, Jacques P, Hernan G Garcia, Samuel Ng, Michael W Perry, Thomas Gregor, and Michael Levine. 2015. “Enhancer Additivity and Non-Additivity Are Determined by Enhancer Strength in the Drosophila Embryo.”. Elife 4.

Hong, Joung-Woo, David A Hendrix, and Michael S Levine. (2008) 2008. “Shadow Enhancers As a Source of Evolutionary Novelty.”. Science 321 (5894): 1314.

Song, Yonghyun, Robert A Marmion, Junyoung O Park, Debopriyo Biswas, Joshua D Rabinowitz, and Stanislav Y Shvartsman. (2017) 2017. “Dynamic Control of DNTP Synthesis in Early Embryos.”. Dev Cell 42 (3): 301-308.e3. doi:10.1016/j.devcel.2017.06.013.

Bialek, William. (2013) 2013. “QnAs With William Bialek.”. Proc Natl Acad Sci U S A 110 (41): 16288.

Zhou, Jian, Ignacio E Schor, Victoria Yao, Chandra L Theesfeld, Raquel Marco-Ferreres, Alicja Tadych, Eileen E M Furlong, and Olga G Troyanskaya. (2019) 2019. “Accurate Genome-Wide Predictions of Spatio-Temporal Gene Expression During Embryonic Development.”. PLoS Genet 15 (9): e1008382. doi:10.1371/journal.pgen.1008382.

Di Talia, Stefano, Richard She, Shelby A Blythe, Xuemin Lu, Qi Fan Zhang, and Eric F Wieschaus. (2013) 2013. “Posttranslational Control of Cdc25 Degradation Terminates Drosophila’s Early Cell-Cycle Program.”. Curr Biol 23 (2): 127-32.

Dubuis, Julien, Gašper Tkačik, Eric F Wieschaus, Thomas Gregor, and William Bialek. (2013) 2013. “Positional Information, in Bits.”. Proc Natl Acad Sci U S A 110 (41): 16301-8.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Microinjection of Morpholino Oligos and RNAs in Sea Squirt (Ciona) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5347.

Shvartsman, Stanislav Y, and Ruth E Baker. (2012) 2012. “Mathematical Models of Morphogen Gradients and Their Effects on Gene Expression.”. Wiley Interdiscip Rev Dev Biol 1 (5): 715-30.

He, Bing, Amy A Caudy, Lance Parsons, Adam Rosebrock, Attilio Pane, Sandeep Raj, and Eric Wieschaus. (2012) 2012. “Mapping the Pericentric Heterochromatin by Comparative Genomic Hybridization Analysis and Chromosome Deletions in Drosophila Melanogaster.”. Genome Res 22 (12): 2507-19.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Isolation of Sea Squirt (Ciona) Gametes, Fertilization, Dechorionation, and Development.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5344.

Park, Christopher Y, Aaron K Wong, Casey S Greene, Jessica Rowland, Yuanfang Guan, Lars A Bongo, Rebecca Burdine, and Olga G Troyanskaya. 2013. “Functional Knowledge Transfer for High-Accuracy Prediction of under-Studied Biological Processes.”. PLoS Comput Biol 9 (3): e1002957.

Wagner, Eileen, and Michael Levine. (2012) 2012. “FGF Signaling Establishes the Anterior Border of the Ciona Neural Tube.”. Development 139 (13): 2351-9.

Stolfi, Alberto, Blair Gainous, John J Young, Alessandro Mori, Michael Levine, and Lionel Christiaen. (2010) 2010. “Early Chordate Origins of the Vertebrate Second Heart Field.”. Science 329 (5991): 565-8.