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Embryo, Nonmammalian

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  • Rushlow, Christine A, and Stanislav Y Shvartsman. (2012) 2012. “Temporal Dynamics, Spatial Range, and Transcriptional Interpretation of the Dorsal Morphogen Gradient.”. Curr Opin Genet Dev 22 (6): 542-6.
    Reference Link
  • Hunter, C, and E Wieschaus. (2000) 2000. “Regulated Expression of Nullo Is Required for the Formation of Distinct Apical and Basal Adherens Junctions in the Drosophila Blastoderm.”. J Cell Biol 150 (2): 391-401.
    Reference Link
  • Hilgers, Valérie, Michael W Perry, David Hendrix, Alexander Stark, Michael Levine, and Benjamin Haley. (2011) 2011. “Neural-Specific Elongation of 3’ UTRs During Drosophila Development.”. Proc Natl Acad Sci U S A 108 (38): 15864-9.
    Reference Link
  • Park, Christopher Y, Aaron K Wong, Casey S Greene, Jessica Rowland, Yuanfang Guan, Lars A Bongo, Rebecca Burdine, and Olga G Troyanskaya. 2013. “Functional Knowledge Transfer for High-Accuracy Prediction of under-Studied Biological Processes.”. PLoS Comput Biol 9 (3): e1002957.
    Reference Link
  • Gregor, Thomas, William Bialek, Rob R de Ruyter van Steveninck, David W Tank, and Eric F Wieschaus. (2005) 2005. “Diffusion and Scaling During Early Embryonic Pattern Formation.”. Proc Natl Acad Sci U S A 102 (51): 18403-7.
    Reference Link
  • Di Gregorio, Anna, and Michael Levine. (2002) 2002. “Analyzing Gene Regulation in Ascidian Embryos: New Tools for New Perspectives.”. Differentiation 70 (4-5): 132-9.
    Reference Link
  • Boettiger, Alistair N, and Michael Levine. (2009) 2009. “Synchronous and Stochastic Patterns of Gene Activation in the Drosophila Embryo.”. Science 325 (5939): 471-3.
    Reference Link
  • Garcia, Hernan G, Mikhail Tikhonov, Albert Lin, and Thomas Gregor. (2013) 2013. “Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning.”. Curr Biol 23 (21): 2140-5.
    Reference Link
  • Peifer, M, and E Wieschaus. (1990) 1990. “Mutations in the Drosophila Gene Extradenticle Affect the Way Specific Homeo Domain Proteins Regulate Segmental Identity.”. Genes Dev 4 (7): 1209-23.
    Reference Link
  • Schejter, E D, and E Wieschaus. 1993. “Functional Elements of the Cytoskeleton in the Early Drosophila Embryo.”. Annu Rev Cell Biol 9: 67-99.
    Reference Link
  • Lu, Xuemin, Jennifer M Li, Olivier Elemento, Saeed Tavazoie, and Eric F Wieschaus. (2009) 2009. “Coupling of Zygotic Transcription to Mitotic Control at the Drosophila Mid-Blastula Transition.”. Development 136 (12): 2101-10.
    Reference Link
  • Dubuis, Julien, Reba Samanta, and Thomas Gregor. 2013. “Accurate Measurements of Dynamics and Reproducibility in Small Genetic Networks.”. Mol Syst Biol 9: 639.
    Reference Link
  • Kim, Yoosik, Ze’ev Paroush, Knud Nairz, Ernst Hafen, Gerardo Jiménez, and Stanislav Y Shvartsman. (2011) 2011. “Substrate-Dependent Control of MAPK Phosphorylation in Vivo.”. Mol Syst Biol 7: 467.
    Reference Link
  • Morrison, Alexander H, Martin Scheeler, Julien Dubuis, and Thomas Gregor. (2012) 2012. “Quantifying the Bicoid Morphogen Gradient in Living Fly Embryos.”. Cold Spring Harb Protoc 2012 (4): 398-406.
    Reference Link
  • Perry, Michael W, Alistair N Boettiger, and Michael Levine. (2011) 2011. “Multiple Enhancers Ensure Precision of Gap Gene-Expression Patterns in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 108 (33): 13570-5.
    Reference Link
  • Dawes-Hoang, Rachel E, Kush M Parmar, Audrey E Christiansen, Chris B Phelps, Andrea H Brand, and Eric F Wieschaus. (2005) 2005. “Folded Gastrulation, Cell Shape Change and the Control of Myosin Localization.”. Development 132 (18): 4165-78.
    Reference Link
  • Goodliffe, Julie M, Michael D Cole, and Eric Wieschaus. 2007. “Coordinated Regulation of Myc Trans-Activation Targets by Polycomb and the Trithorax Group Protein Ash1.”. BMC Mol Biol 8: 40.
    Reference Link
  • Rogers, William A, Yogesh Goyal, Kei Yamaya, Stanislav Y Shvartsman, and Michael S Levine. (2017) 2017. “Uncoupling Neurogenic Gene Networks in the Drosophila Embryo.”. Genes Dev 31 (7): 634-38. doi:10.1101/gad.297150.117.
    Reference Link
  • Chopra, Vivek S, Jessica Doran Cande, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Stalled Hox Promoters As Chromosomal Boundaries.”. Genes Dev 23 (13): 1505-9.
    Reference Link
  • Hendrix, David A, Joung-Woo Hong, Julia Zeitlinger, Daniel S Rokhsar, and Michael S Levine. (2008) 2008. “Promoter Elements Associated With RNA Pol II Stalling in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 105 (22): 7762-7.
    Reference Link
  • Krotov, Dmitry, Julien Dubuis, Thomas Gregor, and William Bialek. (2014) 2014. “Morphogenesis at Criticality.”. Proc Natl Acad Sci U S A 111 (10): 3683-8.
    Reference Link
  • Shi, Weiyang, Sara M Peyrot, Edwin Munro, and Michael Levine. (2009) 2009. “FGF3 in the Floor Plate Directs Notochord Convergent Extension in the Ciona Tadpole.”. Development 136 (1): 23-8.
    Reference Link
  • Grosshans, Jörg, Arno J Müller, and Eric Wieschaus. (2003) 2003. “Control of Cleavage Cycles in Drosophila Embryos by frühstart.”. Dev Cell 5 (2): 285-94.
    Reference Link
  • Thomas, Jeffrey H, and Eric Wieschaus. (2004) 2004. “src64 and tec29 Are Required for Microfilament Contraction During Drosophila Cellularization.”. Development 131 (4): 863-71.
    Reference Link
  • Houchmandzadeh, B, E Wieschaus, and S Leibler. (2005) 2005. “Precise Domain Specification in the Developing Drosophila Embryo.”. Phys Rev E Stat Nonlin Soft Matter Phys 72 (6 Pt 1): 061920.
    Reference Link
  • Bothma, Jacques P, Michael Levine, and Alistair N Boettiger. (2010) 2010. “Morphogen Gradients: Limits to Signaling or Limits to Measurement?”. Curr Biol 20 (5).
    Reference Link
  • Houchmandzadeh, Bahram, Eric Wieschaus, and Stanislas Leibler. (2002) 2002. “Establishment of Developmental Precision and Proportions in the Early Drosophila Embryo.”. Nature 415 (6873): 798-802.
    Reference Link
  • Kim, Yoosik, Antonina Iagovitina, Keisuke Ishihara, Kate M Fitzgerald, Bart Deplancke, Dmitri Papatsenko, and Stanislav Y Shvartsman. (2013) 2013. “Context-Dependent Transcriptional Interpretation of Mitogen Activated Protein Kinase Signaling in the Drosophila Embryo.”. Chaos 23 (2): 025105.
    Reference Link
  • Christiaen, Lionel, Alberto Stolfi, Brad Davidson, and Michael Levine. (2009) 2009. “Spatio-Temporal Intersection of Lhx3 and Tbx6 Defines the Cardiac Field through Synergistic Activation of Mesp.”. Dev Biol 328 (2): 552-60.
    Reference Link
  • Little, Shawn C, Mikhail Tikhonov, and Thomas Gregor. (2013) 2013. “Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity.”. Cell 154 (4): 789-800.
    Reference Link
  • Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Microinjection of Morpholino Oligos and RNAs in Sea Squirt (Ciona) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5347.
    Reference Link
  • Haupaix, Nicolas, Philip Barron Abitua, Cathy Sirour, Hitoyoshi Yasuo, Michael Levine, and Clare Hudson. (2014) 2014. “Ephrin-Mediated Restriction of ERK1 2 Activity Delimits the Number of Pigment Cells in the Ciona CNS.”. Dev Biol 394 (1): 170-80.
    Reference Link
  • Cande, Jessica Doran, Yury Goltsev, and Michael S Levine. (2009) 2009. “Conservation of Enhancer Location in Divergent Insects.”. Proc Natl Acad Sci U S A 106 (34): 14414-9.
    Reference Link
  • Biemar, Frédéric, Robert Zinzen, Matthew Ronshaugen, Victor Sementchenko, Robert Manak, and Michael S Levine. (2005) 2005. “Spatial Regulation of MicroRNA Gene Expression in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 102 (44): 15907-11.
    Reference Link
  • Chopra, Vivek S, David A Hendrix, Leighton J Core, Chiahao Tsui, John T Lis, and Michael Levine. (2011) 2011. “The Polycomb Group Mutant Esc Leads to Augmented Levels of Paused Pol II in the Drosophila Embryo.”. Mol Cell 42 (6): 837-44.
    Reference Link
  • Levario, Thomas J, Mei Zhan, Bomyi Lim, Stanislav Y Shvartsman, and Hang Lu. (2013) 2013. “Microfluidic Trap Array for Massively Parallel Imaging of Drosophila Embryos.”. Nat Protoc 8 (4): 721-36.
    Reference Link
  • Wieschaus, E. (1996) 1996. “Embryonic Transcription and the Control of Developmental Pathways.”. Genetics 142 (1): 5-10.
    Reference Link
  • Kanodia, Jitendra S, Yoosik Kim, Raju Tomer, Zia Khan, Kwanghun Chung, John D Storey, Hang Lu, Philipp J Keller, and Stanislav Y Shvartsman. (2011) 2011. “A Computational Statistics Approach for Estimating the Spatial Range of Morphogen Gradients.”. Development 138 (22): 4867-74.
    Reference Link
  • Lembong, Jessica, Nir Yakoby, and Stanislav Y Shvartsman. (2008) 2008. “Spatial Regulation of BMP Signaling by Patterned Receptor Expression.”. Tissue Eng Part A 14 (9): 1469-77.
    Reference Link
  • Lecuit, T, and E Wieschaus. (2000) 2000. “Polarized Insertion of New Membrane from a Cytoplasmic Reservoir During Cleavage of the Drosophila Embryo.”. J Cell Biol 150 (4): 849-60.
    Reference Link
  • Stathopoulos, Angelike, and Michael Levine. (2005) 2005. “Localized Repressors Delineate the Neurogenic Ectoderm in the Early Drosophila Embryo.”. Dev Biol 280 (2): 482-93.
    Reference Link
  • Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Electroporation of Transgenic DNAs in the Sea Squirt Ciona.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5345.
    Reference Link
  • Biemar, Frédéric, David A Nix, Jessica Piel, Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, Robert Manak, and Michael S Levine. (2006) 2006. “Comprehensive Identification of Drosophila Dorsal-Ventral Patterning Genes Using a Whole-Genome Tiling Array.”. Proc Natl Acad Sci U S A 103 (34): 12763-8.
    Reference Link
  • Riggleman, B, P Schedl, and E Wieschaus. (1990) 1990. “Spatial Expression of the Drosophila Segment Polarity Gene Armadillo Is Posttranscriptionally Regulated by Wingless.”. Cell 63 (3): 549-60.
    Reference Link
  • Lagha, Mounia, Jacques P Bothma, Emilia Esposito, Samuel Ng, Laura Stefanik, Chiahao Tsui, Jeffrey Johnston, et al. (2013) 2013. “Paused Pol II Coordinates Tissue Morphogenesis in the Drosophila Embryo.”. Cell 153 (5): 976-87.
    Reference Link
  • Sokac, Anna Marie, and Eric Wieschaus. (2008) 2008. “Local Actin-Dependent Endocytosis Is Zygotically Controlled to Initiate Drosophila Cellularization.”. Dev Cell 14 (5): 775-86.
    Reference Link
  • Stolfi, Alberto, Blair Gainous, John J Young, Alessandro Mori, Michael Levine, and Lionel Christiaen. (2010) 2010. “Early Chordate Origins of the Vertebrate Second Heart Field.”. Science 329 (5991): 565-8.
    Reference Link
  • Kavousanakis, Michail E, Jitendra S Kanodia, Yoosik Kim, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2010) 2010. “A Compartmental Model for the Bicoid Gradient.”. Dev Biol 345 (1): 12-7.
    Reference Link
  • Lecuit, Thomas, Reba Samanta, and Eric Wieschaus. (2002) 2002. “Slam Encodes a Developmental Regulator of Polarized Membrane Growth During Cleavage of the Drosophila Embryo.”. Dev Cell 2 (4): 425-36.
    Reference Link
  • Zallen, Jennifer A, and Eric Wieschaus. (2004) 2004. “Patterned Gene Expression Directs Bipolar Planar Polarity in Drosophila.”. Dev Cell 6 (3): 343-55.
    Reference Link

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