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Schupbach, T, and E Wieschaus. 1998. “Probing for Gene Specificity in Epithelial Development.”. Int J Dev Biol 42 (3): 249-55.

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Hong, Joung-Woo, David A Hendrix, Dmitri Papatsenko, and Michael S Levine. (2008) 2008. “How the Dorsal Gradient Works: Insights from Postgenome Technologies.”. Proc Natl Acad Sci U S A 105 (51): 20072-6.

Andolfatto, Peter, Karen M Wong, and Doris Bachtrog. 2011. “Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species.”. Genome Biol Evol 3: 114-28.

Nibu, Yutaka, Kate Senger, and Michael Levine. (2003) 2003. “CtBP-Independent Repression in the Drosophila Embryo.”. Mol Cell Biol 23 (11): 3990-9.

Yan, Shian-Jang, Jeremiah J Zartman, Minjie Zhang, Anthony Scott, Stanislav Y Shvartsman, and Willis X Li. 2009. “Bistability Coordinates Activation of the EGFR and DPP Pathways in Drosophila Vein Differentiation.”. Mol Syst Biol 5: 278.

Grimm, Oliver, Victoria Sanchez Zini, Yoosik Kim, Jordi Casanova, Stanislav Y Shvartsman, and Eric Wieschaus. (2012) 2012. “Torso RTK Controls Capicua Degradation by Changing Its Subcellular Localization.”. Development 139 (21): 3962-8.

Helman, Aharon, Bomyi Lim, María José Andreu, Yoosik Kim, Tatyana Shestkin, Hang Lu, Gerardo Jiménez, Stanislav Y Shvartsman, and Ze’ev Paroush. (2012) 2012. “RTK Signaling Modulates the Dorsal Gradient.”. Development 139 (16): 3032-9.

Perry, Michael W, Jacques P Bothma, Ryan D Luu, and Michael Levine. (2012) 2012. “Precision of Hunchback Expression in the Drosophila Embryo.”. Curr Biol 22 (23): 2247-52.

Hilgers, Valérie, Michael W Perry, David Hendrix, Alexander Stark, Michael Levine, and Benjamin Haley. (2011) 2011. “Neural-Specific Elongation of 3’ UTRs During Drosophila Development.”. Proc Natl Acad Sci U S A 108 (38): 15864-9.

Markstein, Michele, Peter Markstein, Vicky Markstein, and Michael S Levine. (2002) 2002. “Genome-Wide Analysis of Clustered Dorsal Binding Sites Identifies Putative Target Genes in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 99 (2): 763-8.

Kanodia, Jitendra S, Richa Rikhy, Yoosik Kim, Viktor K Lund, Robert DeLotto, Jennifer Lippincott-Schwartz, and Stanislav Y Shvartsman. (2009) 2009. “Dynamics of the Dorsal Morphogen Gradient.”. Proc Natl Acad Sci U S A 106 (51): 21707-12.

Callahan, Benjamin, Richard A Neher, Doris Bachtrog, Peter Andolfatto, and Boris I Shraiman. (2011) 2011. “Correlated Evolution of Nearby Residues in Drosophilid Proteins.”. PLoS Genet 7 (2): e1001315.

Tolwinski, N S, and E Wieschaus. (2001) 2001. “Armadillo Nuclear Import Is Regulated by Cytoplasmic Anchor Axin and Nuclear Anchor DTCF Pan.”. Development 128 (11): 2107-17.

Osterfield, Miriam, XinXin Du, Trudi Schüpbach, Eric Wieschaus, and Stanislav Y Shvartsman. (2013) 2013. “Three-Dimensional Epithelial Morphogenesis in the Developing Drosophila Egg.”. Dev Cell 24 (4): 400-10.

Peifer, M, S Orsulic, D Sweeton, and E Wieschaus. (1993) 1993. “A Role for the Drosophila Segment Polarity Gene Armadillo in Cell Adhesion and Cytoskeletal Integrity During Oogenesis.”. Development 118 (4): 1191-207.

Houchmandzadeh, B, E Wieschaus, and S Leibler. (2005) 2005. “Precise Domain Specification in the Developing Drosophila Embryo.”. Phys Rev E Stat Nonlin Soft Matter Phys 72 (6 Pt 1): 061920.

Sample, Christine, and Stanislav Y Shvartsman. (2010) 2010. “Multiscale Modeling of Diffusion in the Early Drosophila Embryo.”. Proc Natl Acad Sci U S A 107 (22): 10092-6.

Grosshans, J, and E Wieschaus. (2000) 2000. “A Genetic Link Between Morphogenesis and Cell Division During Formation of the Ventral Furrow in Drosophila.”. Cell 101 (5): 523-31.

Bothma, Jacques P, Hernan G Garcia, Emilia Esposito, Gavin Schlissel, Thomas Gregor, and Michael Levine. (2014) 2014. “Dynamic Regulation of Eve Stripe 2 Expression Reveals Transcriptional Bursts in Living Drosophila Embryos.”. Proc Natl Acad Sci U S A 111 (29): 10598-603.

Harbison, Susan T, Mary Anna Carbone, Julien Ayroles, Eric A Stone, Richard F Lyman, and Trudy F C Mackay. (2009) 2009. “Co-Regulated Transcriptional Networks Contribute to Natural Genetic Variation in Drosophila Sleep.”. Nat Genet 41 (3): 371-5.

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Rushlow, Christine A, and Stanislav Y Shvartsman. (2012) 2012. “Temporal Dynamics, Spatial Range, and Transcriptional Interpretation of the Dorsal Morphogen Gradient.”. Curr Opin Genet Dev 22 (6): 542-6.

Markstein, Michele, Robert Zinzen, Peter Markstein, Ka-Ping Yee, Albert Erives, Angela Stathopoulos, and Michael Levine. (2004) 2004. “A Regulatory Code for Neurogenic Gene Expression in the Drosophila Embryo.”. Development 131 (10): 2387-94.

Little, Shawn C, Mikhail Tikhonov, and Thomas Gregor. (2013) 2013. “Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity.”. Cell 154 (4): 789-800.

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Kim, Yoosik, María José Andreu, Bomyi Lim, Kwanghun Chung, Mark Terayama, Gerardo Jiménez, Celeste A Berg, Hang Lu, and Stanislav Y Shvartsman. (2011) 2011. “Gene Regulation by MAPK Substrate Competition.”. Dev Cell 20 (6): 880-7.

Cheung, Lily S, David S A Simakov, Alisa Fuchs, George Pyrowolakis, and Stanislav Y Shvartsman. (2013) 2013. “Dynamic Model for the Coordination of Two Enhancers of Broad by EGFR Signaling.”. Proc Natl Acad Sci U S A 110 (44): 17939-44.

Goodliffe, Julie M, Michael D Cole, and Eric Wieschaus. 2007. “Coordinated Regulation of Myc Trans-Activation Targets by Polycomb and the Trithorax Group Protein Ash1.”. BMC Mol Biol 8: 40.

Klein, Daryl E, Valerie M Nappi, Gregory T Reeves, Stanislav Y Shvartsman, and Mark A Lemmon. (2004) 2004. “Argos Inhibits Epidermal Growth Factor Receptor Signalling by Ligand Sequestration.”. Nature 430 (7003): 1040-4.

Drocco, J A, E F Wieschaus, and D W Tank. (2012) 2012. “The Synthesis-Diffusion-Degradation Model Explains Bicoid Gradient Formation in Unfertilized Eggs.”. Phys Biol 9 (5): 055004.

Chopra, Vivek S, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Regulation of Hox Gene Activity by Transcriptional Elongation in Drosophila.”. Curr Biol 19 (8): 688-93.

Di Talia, Stefano, Richard She, Shelby A Blythe, Xuemin Lu, Qi Fan Zhang, and Eric F Wieschaus. (2013) 2013. “Posttranslational Control of Cdc25 Degradation Terminates Drosophila’s Early Cell-Cycle Program.”. Curr Biol 23 (2): 127-32.

Bothma, Jacques P, Michael Levine, and Alistair N Boettiger. (2010) 2010. “Morphogen Gradients: Limits to Signaling or Limits to Measurement?”. Curr Biol 20 (5).

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Papatsenko, Dmitri, and Michael S Levine. (2008) 2008. “Dual Regulation by the Hunchback Gradient in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 105 (8): 2901-6.

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Morozova, Tatiana, V, Julien Ayroles, Katherine W Jordan, Laura Duncan, Mary Anna Carbone, Richard F Lyman, Eric A Stone, et al. (2009) 2009. “Alcohol Sensitivity in Drosophila: Translational Potential of Systems Genetics.”. Genetics 183 (2): 733-45, 1SI.

Tipping, Marla, Yoosik Kim, Phillip Kyriakakis, Mei Tong, Stanislav Y Shvartsman, and Alexey Veraksa. (2010) 2010. “β-Arrestin Kurtz Inhibits MAPK and Toll Signalling in Drosophila Development.”. EMBO J 29 (19): 3222-35.

Kim, Yoosik, Ze’ev Paroush, Knud Nairz, Ernst Hafen, Gerardo Jiménez, and Stanislav Y Shvartsman. (2011) 2011. “Substrate-Dependent Control of MAPK Phosphorylation in Vivo.”. Mol Syst Biol 7: 467.

Ahmed, Yashi, S Hayashi, A Levine, and E Wieschaus. (1998) 1998. “Regulation of Armadillo by a Drosophila APC Inhibits Neuronal Apoptosis During Retinal Development.”. Cell 93 (7): 1171-82.

Goodliffe, Julie M, Eric Wieschaus, and Michael D Cole. (2005) 2005. “Polycomb Mediates Myc Autorepression and Its Transcriptional Control of Many Loci in Drosophila.”. Genes Dev 19 (24): 2941-6.

Riggleman, B, E Wieschaus, and P Schedl. (1989) 1989. “Molecular Analysis of the Armadillo Locus: Uniformly Distributed Transcripts and a Protein With Novel Internal Repeats Are Associated With a Drosophila Segment Polarity Gene.”. Genes Dev 3 (1): 96-113.

Ayroles, Julien, Brooke A Laflamme, Eric A Stone, Mariana F Wolfner, and Trudy F C Mackay. (2011) 2011. “Functional Genome Annotation of Drosophila Seminal Fluid Proteins Using Transcriptional Genetic Networks.”. Genet Res (Camb) 93 (6): 387-95.

Hayashi, S, B Rubinfeld, B Souza, P Polakis, E Wieschaus, and A J Levine. (1997) 1997. “A Drosophila Homolog of the Tumor Suppressor Gene Adenomatous Polyposis Coli down-Regulates Beta-Catenin But Its Zygotic Expression Is Not Essential for the Regulation of Armadillo.”. Proc Natl Acad Sci U S A 94 (1): 242-7.

Erives, Albert, and Michael Levine. (2004) 2004. “Coordinate Enhancers Share Common Organizational Features in the Drosophila Genome.”. Proc Natl Acad Sci U S A 101 (11): 3851-6.

Dubuis, Julien, Reba Samanta, and Thomas Gregor. 2013. “Accurate Measurements of Dynamics and Reproducibility in Small Genetic Networks.”. Mol Syst Biol 9: 639.

Sokac, Anna Marie, and Eric Wieschaus. (2008) 2008. “Zygotically Controlled F-Actin Establishes Cortical Compartments to Stabilize Furrows During Drosophila Cellularization.”. J Cell Sci 121 (Pt 11): 1815-24.