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Drosophila melanogaster

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  • Rushlow, Christine A, and Stanislav Y Shvartsman. (2012) 2012. “Temporal Dynamics, Spatial Range, and Transcriptional Interpretation of the Dorsal Morphogen Gradient.”. Curr Opin Genet Dev 22 (6): 542-6.
    Reference Link
  • Wieschaus, E, and R Nöthiger. (1982) 1982. “The Role of the Transformer Genes in the Development of Genitalia and Analia of Drosophila Melanogaster.”. Dev Biol 90 (2): 320-34.
    Reference Link
  • Little, Shawn C, Mikhail Tikhonov, and Thomas Gregor. (2013) 2013. “Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity.”. Cell 154 (4): 789-800.
    Reference Link
  • Hilgers, Valérie, Michael W Perry, David Hendrix, Alexander Stark, Michael Levine, and Benjamin Haley. (2011) 2011. “Neural-Specific Elongation of 3’ UTRs During Drosophila Development.”. Proc Natl Acad Sci U S A 108 (38): 15864-9.
    Reference Link
  • Wieschaus, E, C Nusslein-Volhard, and H Kluding. (1984) 1984. “Krüppel, a Gene Whose Activity Is Required Early in the Zygotic Genome for Normal Embryonic Segmentation.”. Dev Biol 104 (1): 172-86.
    Reference Link
  • Zartman, Jeremiah J, Jitendra S Kanodia, Lily S Cheung, and Stanislav Y Shvartsman. (2009) 2009. “Feedback Control of the EGFR Signaling Gradient: Superposition of Domain-Splitting Events in Drosophila Oogenesis.”. Development 136 (17): 2903-11.
    Reference Link
  • Gregor, Thomas, William Bialek, Rob R de Ruyter van Steveninck, David W Tank, and Eric F Wieschaus. (2005) 2005. “Diffusion and Scaling During Early Embryonic Pattern Formation.”. Proc Natl Acad Sci U S A 102 (51): 18403-7.
    Reference Link
  • Yakoby, Nir, Christopher A Bristow, Danielle Gong, Xenia Schafer, Jessica Lembong, Jeremiah J Zartman, Marc S Halfon, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “A Combinatorial Code for Pattern Formation in Drosophila Oogenesis.”. Dev Cell 15 (5): 725-37.
    Reference Link
  • Morozova, Tatiana, V, Julien Ayroles, Katherine W Jordan, Laura Duncan, Mary Anna Carbone, Richard F Lyman, Eric A Stone, et al. (2009) 2009. “Alcohol Sensitivity in Drosophila: Translational Potential of Systems Genetics.”. Genetics 183 (2): 733-45, 1SI.
    Reference Link
  • Ayroles, Julien, Mary Anna Carbone, Eric A Stone, Katherine W Jordan, Richard F Lyman, Michael M Magwire, Stephanie M Rollmann, et al. (2009) 2009. “Systems Genetics of Complex Traits in Drosophila Melanogaster.”. Nat Genet 41 (3): 299-307.
    Reference Link
  • Levine, Michael. (2014) 2014. “Retrospective. Walter Gehring (1939-2014).”. Science 345 (6194): 277.
    Reference Link
  • Haddrill, Penelope R, Doris Bachtrog, and Peter Andolfatto. (2008) 2008. “Positive and Negative Selection on Noncoding DNA in Drosophila Simulans.”. Mol Biol Evol 25 (9): 1825-34.
    Reference Link
  • Peifer, M, and E Wieschaus. (1990) 1990. “Mutations in the Drosophila Gene Extradenticle Affect the Way Specific Homeo Domain Proteins Regulate Segmental Identity.”. Genes Dev 4 (7): 1209-23.
    Reference Link
  • Lim, Bomyi, Núria Samper, Hang Lu, Christine Rushlow, Gerardo Jiménez, and Stanislav Y Shvartsman. (2013) 2013. “Kinetics of Gene Derepression by ERK Signaling.”. Proc Natl Acad Sci U S A 110 (25): 10330-5.
    Reference Link
  • Zartman, Jeremiah J, Jitendra S Kanodia, Nir Yakoby, Xenia Schafer, Colin Watson, Karin Schlichting, Christian Dahmann, and Stanislav Y Shvartsman. (2009) 2009. “Expression Patterns of Cadherin Genes in Drosophila Oogenesis.”. Gene Expr Patterns 9 (1): 31-6.
    Reference Link
  • Wang, Yu-Chiun, Zia Khan, Matthias Kaschube, and Eric F Wieschaus. (2012) 2012. “Differential Positioning of Adherens Junctions Is Associated With Initiation of Epithelial Folding.”. Nature 484 (7394): 390-3.
    Reference Link
  • Wieschaus, E, and W Gehring. (1976) 1976. “Clonal Analysis of Primordial Disc Cells in the Early Embryo of Drosophila Melanogaster.”. Dev Biol 50 (2): 249-63.
    Reference Link
  • Andolfatto, Peter. (2005) 2005. “Adaptive Evolution of Non-Coding DNA in Drosophila.”. Nature 437 (7062): 1149-52.
    Reference Link
  • Jumbo-Lucioni, Patricia, Julien Ayroles, Michelle Chambers, Katherine W Jordan, Jeff Leips, Trudy Fc Mackay, and Maria De Luca. 2010. “Systems Genetics Analysis of Body Weight and Energy Metabolism Traits in Drosophila Melanogaster.”. BMC Genomics 11: 297.
    Reference Link
  • Zusman, S B, and E F Wieschaus. (1985) 1985. “Requirements for Zygotic Gene Activity During Gastrulation in Drosophila Melanogaster.”. Dev Biol 111 (2): 359-71.
    Reference Link
  • Wilson, Daniel J, Ryan D Hernandez, Peter Andolfatto, and Molly Przeworski. (2011) 2011. “A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding Sequences.”. PLoS Genet 7 (12): e1002395.
    Reference Link
  • Nusslein-Volhard, C, and E Wieschaus. (1980) 1980. “Mutations Affecting Segment Number and Polarity in Drosophila.”. Nature 287 (5785): 795-801.
    Reference Link
  • Martin, Adam C, Michael Gelbart, Rodrigo Fernandez-Gonzalez, Matthias Kaschube, and Eric F Wieschaus. (2010) 2010. “Integration of Contractile Forces During Tissue Invagination.”. J Cell Biol 188 (5): 735-49.
    Reference Link
  • Berman, Benjamin P, Yutaka Nibu, Barret D Pfeiffer, Pavel Tomancak, Susan E Celniker, Michael Levine, Gerald M Rubin, and Michael B Eisen. (2002) 2002. “Exploiting Transcription Factor Binding Site Clustering to Identify Cis-Regulatory Modules Involved in Pattern Formation in the Drosophila Genome.”. Proc Natl Acad Sci U S A 99 (2): 757-62.
    Reference Link
  • Bothma, Jacques P, and Michael Levine. (2013) 2013. “Development: Lights, Camera, Action--the Drosophila Embryo Goes Live!”. Curr Biol 23 (21).
    Reference Link
  • Zusman, S B, and E Wieschaus. (1987) 1987. “A Cell Marker System and Mosaic Patterns During Early Embryonic Development in Drosophila Melanogaster.”. Genetics 115 (4): 725-36.
    Reference Link
  • Zwarts, Liesbeth, Lies Vanden Broeck, Elisa Cappuyns, Julien Ayroles, Michael M Magwire, Veerle Vulsteke, Jason Clements, Trudy F C Mackay, and Patrick Callaerts. (2015) 2015. “The Genetic Basis of Natural Variation in Mushroom Body Size in Drosophila Melanogaster.”. Nat Commun 6: 10115. doi:10.1038/ncomms10115.
    Reference Link
  • Drocco, J A, E F Wieschaus, and D W Tank. (2012) 2012. “The Synthesis-Diffusion-Degradation Model Explains Bicoid Gradient Formation in Unfertilized Eggs.”. Phys Biol 9 (5): 055004.
    Reference Link
  • Merrill, P T, D Sweeton, and E Wieschaus. (1988) 1988. “Requirements for Autosomal Gene Activity During Precellular Stages of Drosophila Melanogaster.”. Development 104 (3): 495-509.
    Reference Link
  • Chopra, Vivek S, David A Hendrix, Leighton J Core, Chiahao Tsui, John T Lis, and Michael Levine. (2011) 2011. “The Polycomb Group Mutant Esc Leads to Augmented Levels of Paused Pol II in the Drosophila Embryo.”. Mol Cell 42 (6): 837-44.
    Reference Link
  • Perry, Michael W, Alistair N Boettiger, and Michael Levine. (2011) 2011. “Multiple Enhancers Ensure Precision of Gap Gene-Expression Patterns in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 108 (33): 13570-5.
    Reference Link
  • Farley, Emma, and Michael Levine. (2012) 2012. “HOT DNAs: A Novel Class of Developmental Enhancers.”. Genes Dev 26 (9): 873-6.
    Reference Link
  • Cande, Jessica Doran, Vivek S Chopra, and Michael Levine. (2009) 2009. “Evolving Enhancer-Promoter Interactions Within the Tinman Complex of the Flour Beetle, Tribolium Castaneum.”. Development 136 (18): 3153-60.
    Reference Link
  • Wieschaus, E, and J Szabad. (1979) 1979. “The Development and Function of the Female Germ Line in Drosophila Melanogaster: A Cell Lineage Study.”. Dev Biol 68 (1): 29-46.
    Reference Link
  • Szabad, J, T Schupbach, and E Wieschaus. (1979) 1979. “Cell Lineage and Development in the Larval Epidermis of Drosophila Melanogaster.”. Dev Biol 73 (2): 256-71.
    Reference Link
  • Klibaite, Ugne, Gordon J Berman, Jessica Doran Cande, David L Stern, and Joshua W Shaevitz. (2017) 2017. “An Unsupervised Method for Quantifying the Behavior of Paired Animals.”. Phys Biol 14 (1): 015006. doi:10.1088/1478-3975/aa5c50.
    Reference Link
  • Chopra, Vivek S, Jessica Doran Cande, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Stalled Hox Promoters As Chromosomal Boundaries.”. Genes Dev 23 (13): 1505-9.
    Reference Link
  • Markstein, Michele, Robert Zinzen, Peter Markstein, Ka-Ping Yee, Albert Erives, Angela Stathopoulos, and Michael Levine. (2004) 2004. “A Regulatory Code for Neurogenic Gene Expression in the Drosophila Embryo.”. Development 131 (10): 2387-94.
    Reference Link
  • Lecuit, T, and E Wieschaus. (2000) 2000. “Polarized Insertion of New Membrane from a Cytoplasmic Reservoir During Cleavage of the Drosophila Embryo.”. J Cell Biol 150 (4): 849-60.
    Reference Link
  • Haddrill, Penelope R, Kevin R Thornton, Brian Charlesworth, and Peter Andolfatto. (2005) 2005. “Multilocus Patterns of Nucleotide Variability and the Demographic and Selection History of Drosophila Melanogaster Populations.”. Genome Res 15 (6): 790-9.
    Reference Link
  • Andolfatto, Peter. (2007) 2007. “Hitchhiking Effects of Recurrent Beneficial Amino Acid Substitutions in the Drosophila Melanogaster Genome.”. Genome Res 17 (12): 1755-62.
    Reference Link
  • Houchmandzadeh, Bahram, Eric Wieschaus, and Stanislas Leibler. (2002) 2002. “Establishment of Developmental Precision and Proportions in the Early Drosophila Embryo.”. Nature 415 (6873): 798-802.
    Reference Link
  • Markstein, Michele, and Michael Levine. (2002) 2002. “Decoding Cis-Regulatory DNAs in the Drosophila Genome.”. Curr Opin Genet Dev 12 (5): 601-6.
    Reference Link
  • Lu, Xuemin, Jeff Drocco, and Eric F Wieschaus. (2010) 2010. “Cell Cycle Regulation via Inter-Nuclear Communication During the Early Embryonic Development of Drosophila Melanogaster.”. Cell Cycle 9 (14): 2908-10.
    Reference Link
  • Pritykin, Yuri, Tarcisio Brito, Trudi Schüpbach, Mona Singh, and Attilio Pane. (2017) 2017. “Integrative Analysis Unveils New Functions for the Drosophila Cutoff Protein in Noncoding RNA Biogenesis and Gene Regulation.”. RNA 23 (7): 1097-1109. doi:10.1261/rna.058594.116.
    Reference Link
  • Gregor, Thomas, Eric F Wieschaus, Alistair P McGregor, William Bialek, and David W Tank. (2007) 2007. “Stability and Nuclear Dynamics of the Bicoid Morphogen Gradient.”. Cell 130 (1): 141-52.
    Reference Link
  • Chopra, Vivek S, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Regulation of Hox Gene Activity by Transcriptional Elongation in Drosophila.”. Curr Biol 19 (8): 688-93.
    Reference Link
  • Levine, Michael. (2011) 2011. “Paused RNA Polymerase II As a Developmental Checkpoint.”. Cell 145 (4): 502-11.
    Reference Link
  • Coulter, D E, E A Swaykus, M A Beran-Koehn, D Goldberg, E Wieschaus, and P Schedl. (1990) 1990. “Molecular Analysis of Odd-Skipped, a Zinc Finger Encoding Segmentation Gene With a Novel Pair-Rule Expression Pattern.”. EMBO J 9 (11): 3795-804.
    Reference Link
  • Zhou, Jian, and Olga G Troyanskaya. (2014) 2014. “Global Quantitative Modeling of Chromatin Factor Interactions.”. PLoS Comput Biol 10 (3): e1003525.
    Reference Link

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