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Drosophila

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  • Müller, H A, R Samanta, and E Wieschaus. (1999) 1999. “Wingless Signaling in the Drosophila Embryo: Zygotic Requirements and the Role of the Frizzled Genes.”. Development 126 (3): 577-86.
    Reference Link
  • Thomas, Jeffrey H, and Eric Wieschaus. (2004) 2004. “src64 and tec29 Are Required for Microfilament Contraction During Drosophila Cellularization.”. Development 131 (4): 863-71.
    Reference Link
  • Hu, Tina T, Michael B Eisen, Kevin R Thornton, and Peter Andolfatto. (2013) 2013. “A Second-Generation Assembly of the Drosophila Simulans Genome Provides New Insights into Patterns of Lineage-Specific Divergence.”. Genome Res 23 (1): 89-98.
    Reference Link
  • Di Talia, Stefano, Richard She, Shelby A Blythe, Xuemin Lu, Qi Fan Zhang, and Eric F Wieschaus. (2013) 2013. “Posttranslational Control of Cdc25 Degradation Terminates Drosophila’s Early Cell-Cycle Program.”. Curr Biol 23 (2): 127-32.
    Reference Link
  • Bothma, Jacques P, Michael Levine, and Alistair N Boettiger. (2010) 2010. “Morphogen Gradients: Limits to Signaling or Limits to Measurement?”. Curr Biol 20 (5).
    Reference Link
  • Senger, Kate, Grant W Armstrong, William J Rowell, Jennifer M Kwan, Michele Markstein, and Michael Levine. (2004) 2004. “Immunity Regulatory DNAs Share Common Organizational Features in Drosophila.”. Mol Cell 13 (1): 19-32.
    Reference Link
  • Rauskolb, C, K M Smith, M Peifer, and E Wieschaus. (1995) 1995. “Extradenticle Determines Segmental Identities Throughout Drosophila Development.”. Development 121 (11): 3663-73.
    Reference Link
  • Parks, S, and E Wieschaus. (1991) 1991. “The Drosophila Gastrulation Gene Concertina Encodes a G Alpha-Like Protein.”. Cell 64 (2): 447-58.
    Reference Link
  • Kavousanakis, Michail E, Jitendra S Kanodia, Yoosik Kim, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2010) 2010. “A Compartmental Model for the Bicoid Gradient.”. Dev Biol 345 (1): 12-7.
    Reference Link
  • Zhou, Jian, Ignacio E Schor, Victoria Yao, Chandra L Theesfeld, Raquel Marco-Ferreres, Alicja Tadych, Eileen E M Furlong, and Olga G Troyanskaya. (2019) 2019. “Accurate Genome-Wide Predictions of Spatio-Temporal Gene Expression During Embryonic Development.”. PLoS Genet 15 (9): e1008382. doi:10.1371/journal.pgen.1008382.
    Reference Link
  • Peifer, M, D Sweeton, M Casey, and E Wieschaus. (1994) 1994. “Wingless Signal and Zeste-White 3 Kinase Trigger Opposing Changes in the Intracellular Distribution of Armadillo.”. Development 120 (2): 369-80.
    Reference Link
  • Lembong, Jessica, Nir Yakoby, and Stanislav Y Shvartsman. (2008) 2008. “Spatial Regulation of BMP Signaling by Patterned Receptor Expression.”. Tissue Eng Part A 14 (9): 1469-77.
    Reference Link
  • Zallen, Jennifer A, Yehudit Cohen, Andrew M Hudson, Lynn Cooley, Eric Wieschaus, and Eyal D Schejter. (2002) 2002. “SCAR Is a Primary Regulator of Arp2 3-Dependent Morphological Events in Drosophila.”. J Cell Biol 156 (4): 689-701.
    Reference Link
  • Haddrill, Penelope R, Doris Bachtrog, and Peter Andolfatto. (2008) 2008. “Positive and Negative Selection on Noncoding DNA in Drosophila Simulans.”. Mol Biol Evol 25 (9): 1825-34.
    Reference Link
  • Riggleman, B, E Wieschaus, and P Schedl. (1989) 1989. “Molecular Analysis of the Armadillo Locus: Uniformly Distributed Transcripts and a Protein With Novel Internal Repeats Are Associated With a Drosophila Segment Polarity Gene.”. Genes Dev 3 (1): 96-113.
    Reference Link
  • Morize, P, A E Christiansen, M Costa, S Parks, and E Wieschaus. (1998) 1998. “Hyperactivation of the Folded Gastrulation Pathway Induces Specific Cell Shape Changes.”. Development 125 (4): 589-97.
    Reference Link
  • Rauskolb, C, M Peifer, and E Wieschaus. (1993) 1993. “Extradenticle, a Regulator of Homeotic Gene Activity, Is a Homolog of the Homeobox-Containing Human Proto-Oncogene pbx1.”. Cell 74 (6): 1101-12.
    Reference Link
  • Rose, L S, and E Wieschaus. (1992) 1992. “The Drosophila Cellularization Gene Nullo Produces a Blastoderm-Specific Transcript Whose Levels Respond to the Nucleocytoplasmic Ratio.”. Genes Dev 6 (7): 1255-68.
    Reference Link
  • Wieschaus, E. 1980. “A Combined Genetic and Mosaic Approach to the Study of Oogenesis in Drosophila.”. Basic Life Sci 16: 85-94.
    Reference Link
  • Stathopoulos, Angelike, and Michael Levine. (2004) 2004. “Whole-Genome Analysis of Drosophila Gastrulation.”. Curr Opin Genet Dev 14 (5): 477-84.
    Reference Link
  • Riggleman, B, P Schedl, and E Wieschaus. (1990) 1990. “Spatial Expression of the Drosophila Segment Polarity Gene Armadillo Is Posttranscriptionally Regulated by Wingless.”. Cell 63 (3): 549-60.
    Reference Link
  • Schejter, E D, L S Rose, M A Postner, and E Wieschaus. 1992. “Role of the Zygotic Genome in the Restructuring of the Actin Cytoskeleton at the Cycle-14 Transition During Drosophila Embryogenesis.”. Cold Spring Harb Symp Quant Biol 57: 653-9.
    Reference Link
  • Dubuis, Julien, Gašper Tkačik, Eric F Wieschaus, Thomas Gregor, and William Bialek. (2013) 2013. “Positional Information, in Bits.”. Proc Natl Acad Sci U S A 110 (41): 16301-8.
    Reference Link
  • Coppey, Mathieu, Alexander M Berezhkovskii, Yoosik Kim, Alistair N Boettiger, and Stanislav Y Shvartsman. (2007) 2007. “Modeling the Bicoid Gradient: Diffusion and Reversible Nuclear Trapping of a Stable Protein.”. Dev Biol 312 (2): 623-30.
    Reference Link
  • Hong, Joung-Woo, David A Hendrix, Dmitri Papatsenko, and Michael S Levine. (2008) 2008. “How the Dorsal Gradient Works: Insights from Postgenome Technologies.”. Proc Natl Acad Sci U S A 105 (51): 20072-6.
    Reference Link
  • Bachtrog, Doris, Kevin Thornton, Andrew Clark, and Peter Andolfatto. (2006) 2006. “Extensive Introgression of Mitochondrial DNA Relative to Nuclear Genes in the Drosophila Yakuba Species Group.”. Evolution 60 (2): 292-302.
    Reference Link
  • Ahmed, Yashi, Ali Nouri, and Eric Wieschaus. (2002) 2002. “Drosophila Apc1 and Apc2 Regulate Wingless Transduction Throughout Development.”. Development 129 (7): 1751-62.
    Reference Link
  • Papatsenko, Dmitri, Michael Levine, and Yury Goltsev. 2011. “Clusters of Temporal Discordances Reveal Distinct Embryonic Patterning Mechanisms in Drosophila and Anopheles.”. PLoS Biol 9 (1): e1000584.
    Reference Link
  • Stathopoulos, Angelike, Madeleine Van Drenth, Albert Erives, Michele Markstein, and Michael Levine. (2002) 2002. “Whole-Genome Analysis of Dorsal-Ventral Patterning in the Drosophila Embryo.”. Cell 111 (5): 687-701.
    Reference Link
  • Cowden, John, and Michael Levine. (2002) 2002. “The Snail Repressor Positions Notch Signaling in the Drosophila Embryo.”. Development 129 (7): 1785-93.
    Reference Link
  • Tkačik, Gašper, Thomas Gregor, and William Bialek. 2008. “The Role of Input Noise in Transcriptional Regulation.”. PLoS One 3 (7): e2774.
    Reference Link
  • Wilson, Daniel J, Ryan D Hernandez, Peter Andolfatto, and Molly Przeworski. (2011) 2011. “A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding Sequences.”. PLoS Genet 7 (12): e1002395.
    Reference Link
  • Shvartsman, Stanislav Y, Cyrill B Muratov, and Douglas A Lauffenburger. (2002) 2002. “Modeling and Computational Analysis of EGF Receptor-Mediated Cell Communication in Drosophila Oogenesis.”. Development 129 (11): 2577-89.
    Reference Link
  • Berezhkovskii, Alexander M, and Stanislav Y Shvartsman. (2014) 2014. “On the GFP-Based Analysis of Dynamic Concentration Profiles.”. Biophys J 106 (3).
    Reference Link
  • Rebeiz, Mark, Margarita Ramos-Womack, Sangyun Jeong, Peter Andolfatto, Thomas Werner, John True, David L Stern, and Sean B Carroll. (2009) 2009. “Evolution of the Tan Locus Contributed to Pigment Loss in Drosophila Santomea: A Response to Matute Et Al.”. Cell 139 (6): 1189-96.
    Reference Link
  • De Renzis, Stefano, J Yu, R Zinzen, and Eric Wieschaus. (2006) 2006. “Dorsal-Ventral Pattern of Delta Trafficking Is Established by a Snail-Tom-Neuralized Pathway.”. Dev Cell 10 (2): 257-64.
    Reference Link
  • Wieschaus, E, C Audit, and M Masson. (1981) 1981. “A Clonal Analysis of the Roles of Somatic Cells and Germ Line During Oogenesis in Drosophila.”. Dev Biol 88 (1): 92-103.
    Reference Link
  • Peifer, M, P D McCrea, K J Green, E Wieschaus, and B M Gumbiner. (1992) 1992. “The Vertebrate Adhesive Junction Proteins Beta-Catenin and Plakoglobin and the Drosophila Segment Polarity Gene Armadillo Form a Multigene Family With Similar Properties.”. J Cell Biol 118 (3): 681-91.
    Reference Link
  • Bothma, Jacques P, Joe Magliocco, and Michael Levine. (2011) 2011. “The Snail Repressor Inhibits Release, Not Elongation, of Paused Pol II in the Drosophila Embryo.”. Curr Biol 21 (18): 1571-7.
    Reference Link
  • Peifer, M, S Orsulic, D Sweeton, and E Wieschaus. (1993) 1993. “A Role for the Drosophila Segment Polarity Gene Armadillo in Cell Adhesion and Cytoskeletal Integrity During Oogenesis.”. Development 118 (4): 1191-207.
    Reference Link
  • Goodliffe, Julie M, Eric Wieschaus, and Michael D Cole. (2005) 2005. “Polycomb Mediates Myc Autorepression and Its Transcriptional Control of Many Loci in Drosophila.”. Genes Dev 19 (24): 2941-6.
    Reference Link
  • Shvartsman, Stanislav Y, and Ruth E Baker. (2012) 2012. “Mathematical Models of Morphogen Gradients and Their Effects on Gene Expression.”. Wiley Interdiscip Rev Dev Biol 1 (5): 715-30.
    Reference Link
  • Marsh, J L, and E Wieschaus. (1977) 1977. “Germ-Line Dependence of the Maroon-Like Maternal Effect in Drosophila.”. Dev Biol 60 (2): 396-403.
    Reference Link
  • Cande, Jessica Doran, Peter Andolfatto, Benjamin Prud’homme, David L Stern, and Nicolas Gompel. 2012. “Evolution of Multiple Additive Loci Caused Divergence Between Drosophila Yakuba and D. Santomea in Wing Rowing During Male Courtship.”. PLoS One 7 (8): e43888.
    Reference Link
  • Stathopoulos, Angelike, and Michael Levine. (2002) 2002. “Dorsal Gradient Networks in the Drosophila Embryo.”. Dev Biol 246 (1): 57-67.
    Reference Link
  • Bae, Esther, Vincent C Calhoun, Michael Levine, Edward B Lewis, and Robert A Drewell. (2002) 2002. “Characterization of the Intergenic RNA Profile at Abdominal-A and Abdominal-B in the Drosophila Bithorax Complex.”. Proc Natl Acad Sci U S A 99 (26): 16847-52.
    Reference Link
  • Cowden, John, and Michael Levine. (2003) 2003. “Ventral Dominance Governs Sequential Patterns of Gene Expression across the Dorsal-Ventral Axis of the Neuroectoderm in the Drosophila Embryo.”. Dev Biol 262 (2): 335-49.
    Reference Link
  • Lecuit, Thomas, Reba Samanta, and Eric Wieschaus. (2002) 2002. “Slam Encodes a Developmental Regulator of Polarized Membrane Growth During Cleavage of the Drosophila Embryo.”. Dev Cell 2 (4): 425-36.
    Reference Link
  • Leffler, Ellen M, Kevin Bullaughey, Daniel R Matute, Wynn K Meyer, Laure Ségurel, Aarti Venkat, Peter Andolfatto, and Molly Przeworski. 2012. “Revisiting an Old Riddle: What Determines Genetic Diversity Levels Within Species?”. PLoS Biol 10 (9): e1001388.
    Reference Link
  • Sella, Guy, Dmitri A Petrov, Molly Przeworski, and Peter Andolfatto. (2009) 2009. “Pervasive Natural Selection in the Drosophila Genome?”. PLoS Genet 5 (6): e1000495.
    Reference Link

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