Munger, Joshua, Sunil U Bajad, Hilary A Coller, Thomas Shenk, and Joshua D Rabinowitz. (2006) 2006. “Dynamics of the Cellular Metabolome During Human Cytomegalovirus Infection.”. PLoS Pathog 2 (12): e132.

Tipping, Marla, Yoosik Kim, Phillip Kyriakakis, Mei Tong, Stanislav Y Shvartsman, and Alexey Veraksa. (2010) 2010. “β-Arrestin Kurtz Inhibits MAPK and Toll Signalling in Drosophila Development.”. EMBO J 29 (19): 3222-35.

Chang, Howard Y, Jen-Tsan Chi, Sandrine Dudoit, Chanda Bondre, Matt van de Rijn, David Botstein, and Patrick O Brown. (2002) 2002. “Diversity, Topographic Differentiation, and Positional Memory in Human Fibroblasts.”. Proc Natl Acad Sci U S A 99 (20): 12877-82.

Sayama, Koichi, Maximilian Diehn, Kentaro Matsuda, Carolina Lunderius, Mindy Tsai, See-Ying Tam, David Botstein, Patrick O Brown, and Stephen J Galli. (2002) 2002. “Transcriptional Response of Human Mast Cells Stimulated via the Fc(epsilon)RI and Identification of Mast Cells As a Source of IL-11.”. BMC Immunol 3: 5.

Slavov, Nikolai, Edoardo M Airoldi, Alexander van Oudenaarden, and David Botstein. (2012) 2012. “A Conserved Cell Growth Cycle Can Account for the Environmental Stress Responses of Divergent Eukaryotes.”. Mol Biol Cell 23 (10): 1986-97.

Coppey, Mathieu, Alexander M Berezhkovskii, Stuart C Sealfon, and Stanislav Y Shvartsman. (2007) 2007. “Time and Length Scales of Autocrine Signals in Three Dimensions.”. Biophys J 93 (6): 1917-22.

Rogers, William A, Yogesh Goyal, Kei Yamaya, Stanislav Y Shvartsman, and Michael S Levine. (2017) 2017. “Uncoupling Neurogenic Gene Networks in the Drosophila Embryo.”. Genes Dev 31 (7): 634-38. doi:10.1101/gad.297150.117.

Osterfield, Miriam, XinXin Du, Trudi Schüpbach, Eric Wieschaus, and Stanislav Y Shvartsman. (2013) 2013. “Three-Dimensional Epithelial Morphogenesis in the Developing Drosophila Egg.”. Dev Cell 24 (4): 400-10.

Kim, Hye In, Johannes Raffler, Wenyun Lu, Jung-Jin Lee, Deepti Abbey, Danish Saleheen, Joshua D Rabinowitz, et al. (2017) 2017. “Fine Mapping and Functional Analysis Reveal a Role of SLC22A1 in Acylcarnitine Transport.”. Am J Hum Genet 101 (4): 489-502. doi:10.1016/j.ajhg.2017.08.008.

Liu, Sean T H, Ronit Sharon-Friling, Pavlina Ivanova, Stephen B Milne, David S Myers, Joshua D Rabinowitz, Alex Brown, and Thomas Shenk. (2011) 2011. “Synaptic Vesicle-Like Lipidome of Human Cytomegalovirus Virions Reveals a Role for SNARE Machinery in Virion Egress.”. Proc Natl Acad Sci U S A 108 (31): 12869-74.

Miller, Russell A, Yuji Shi, Wenyun Lu, David A Pirman, Aditi Jatkar, Matthew Blatnik, Hong Wu, et al. (2018) 2018. “Targeting Hepatic Glutaminase Activity to Ameliorate Hyperglycemia.”. Nat Med 24 (4): 518-24. doi:10.1038/nm.4514.

Batsilas, Lazaros, Alexander M Berezhkovskii, and Stanislav Y Shvartsman. (2003) 2003. “Stochastic Model of Autocrine and Paracrine Signals in Cell Culture Assays.”. Biophys J 85 (6): 3659-65.

Minhas, Paras S, Ling Liu, Peter K Moon, Amit U Joshi, Christopher Dove, Siddhita Mhatre, Kevin Contrepois, et al. (2019) 2019. “Macrophage De Novo NAD Synthesis Specifies Immune Function in Aging and Inflammation.”. Nat Immunol 20 (1): 50-63. doi:10.1038/s41590-018-0255-3.

Di Talia, Stefano, and Eric F Wieschaus. (2012) 2012. “Short-Term Integration of Cdc25 Dynamics Controls Mitotic Entry During Drosophila Gastrulation.”. Dev Cell 22 (4): 763-74.

Lee, Young-suk, Aaron K Wong, Alicja Tadych, Boris M Hartmann, Christopher Y Park, Veronica A DeJesus, Irene Ramos, Elena Zaslavsky, Stuart C Sealfon, and Olga G Troyanskaya. (2018) 2018. “Interpretation of an Individual Functional Genomics Experiment Guided by Massive Public Data.”. Nat Methods 15 (12): 1049-52. doi:10.1038/s41592-018-0218-5.

Trinklein, Nathan D, John I Murray, Sara J Hartman, David Botstein, and Richard M Myers. (2004) 2004. “The Role of Heat Shock Transcription Factor 1 in the Genome-Wide Regulation of the Mammalian Heat Shock Response.”. Mol Biol Cell 15 (3): 1254-61.

Lemons, Johanna M S, Xiao-Jiang Feng, Bryson D Bennett, Aster Legesse-Miller, Elizabeth L Johnson, Irene Raitman, Elizabeth A Pollina, Herschel A Rabitz, Joshua D Rabinowitz, and Hilary A Coller. 2010. “Quiescent Fibroblasts Exhibit High Metabolic Activity.”. PLoS Biol 8 (10): e1000514.

van Raamsdonk, C D, and S M Tilghman. (2001) 2001. “Optimizing the Detection of Nascent Transcripts by RNA Fluorescence in Situ Hybridization.”. Nucleic Acids Res 29 (8).

Melamud, Eugene, Livia Vastag, and Joshua D Rabinowitz. (2010) 2010. “Metabolomic Analysis and Visualization Engine for LC-MS Data.”. Anal Chem 82 (23): 9818-26.

Monine, Michael I, Alexander M Berezhkovskii, Elizabeth J Joslin, Steven Wiley, Douglas A Lauffenburger, and Stanislav Y Shvartsman. (2005) 2005. “Ligand Accumulation in Autocrine Cell Cultures.”. Biophys J 88 (4): 2384-90.

Senger, Kate, Grant W Armstrong, William J Rowell, Jennifer M Kwan, Michele Markstein, and Michael Levine. (2004) 2004. “Immunity Regulatory DNAs Share Common Organizational Features in Drosophila.”. Mol Cell 13 (1): 19-32.

Grady, Sarah L, Jesse Hwang, Livia Vastag, Joshua D Rabinowitz, and Thomas Shenk. (2012) 2012. “Herpes Simplex Virus 1 Infection Activates poly(ADP-Ribose) Polymerase and Triggers the Degradation of poly(ADP-Ribose) Glycohydrolase.”. J Virol 86 (15): 8259-68.

Chi, Jen-Tsan, Howard Y Chang, Guttorm Haraldsen, Frode L Jahnsen, Olga G Troyanskaya, Dustin S Chang, Zhen Wang, et al. (2003) 2003. “Endothelial Cell Diversity Revealed by Global Expression Profiling.”. Proc Natl Acad Sci U S A 100 (19): 10623-8.