Chikina, Maria D, Curtis Huttenhower, Coleen T Murphy, and Olga G Troyanskaya. (2009) 2009. “Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis Elegans.”. PLoS Comput Biol 5 (6): e1000417.

Li, Siran, Howard A Stone, and Coleen T Murphy. (2015) 2015. “A Microfluidic Device and Automatic Counting System for the Study of C. Elegans Reproductive Aging.”. Lab Chip 15 (2): 524-31. doi:10.1039/c4lc01028k.

Lakhina, Vanisha, Rachel Arey, Rachel Kaletsky, Amanda Kauffman, Geneva Stein, William Keyes, Daniel Xu, and Coleen T Murphy. (2015) 2015. “Genome-Wide Functional Analysis of CREB Long-Term Memory-Dependent Transcription Reveals Distinct Basal and Memory Gene Expression Programs.”. Neuron 85 (2): 330-45.

Ewald, Collin Y, Jess N Landis, Jess Porter Abate, Coleen T Murphy, and Keith Blackwell. (2015) 2015. “Dauer-Independent Insulin IGF-1-Signalling Implicates Collagen Remodelling in Longevity.”. Nature 519 (7541): 97-101. doi:10.1038/nature14021.

Murphy, Coleen T, Steven A McCarroll, Cornelia I Bargmann, Andrew Fraser, Ravi S Kamath, Julie Ahringer, Hao Li, and Cynthia Kenyon. (2003) 2003. “Genes That Act Downstream of DAF-16 to Influence the Lifespan of Caenorhabditis Elegans.”. Nature 424 (6946): 277-83.

Hahm, Jeong-Hoon, Sunhee Kim, Race DiLoreto, Cheng Shi, Seung-Jae Lee V, Coleen T Murphy, and Hong Gil Nam. (2015) 2015. “C. Elegans Maximum Velocity Correlates With Healthspan and Is Maintained in Worms With an Insulin Receptor Mutation.”. Nat Commun 6: 8919. doi:10.1038/ncomms9919.

Park, Christopher Y, Aaron K Wong, Casey S Greene, Jessica Rowland, Yuanfang Guan, Lars A Bongo, Rebecca Burdine, and Olga G Troyanskaya. 2013. “Functional Knowledge Transfer for High-Accuracy Prediction of under-Studied Biological Processes.”. PLoS Comput Biol 9 (3): e1002957.

Wang, Juan, Rachel Kaletsky, Malan Silva, April Williams, Leonard A Haas, Rebecca J Androwski, Jessica N Landis, et al. (2015) 2015. “Cell-Specific Transcriptional Profiling of Ciliated Sensory Neurons Reveals Regulators of Behavior and Extracellular Vesicle Biogenesis.”. Curr Biol 25 (24): 3232-8. doi:10.1016/j.cub.2015.10.057.

Stephens, Greg J, Bethany Johnson-Kerner, William Bialek, and William S Ryu. 2010. “From Modes to Movement in the Behavior of Caenorhabditis Elegans.”. PLoS One 5 (11): e13914.

Kaletsky, Rachel, Vanisha Lakhina, Rachel Arey, April Williams, Jessica Landis, Jasmine M Ashraf, and Coleen T Murphy. (2016) 2016. “The C. Elegans Adult Neuronal IIS FOXO Transcriptome Reveals Adult Phenotype Regulators.”. Nature 529 (7584): 92-6. doi:10.1038/nature16483.

Murphy, Coleen T, Seung-Jae Lee, and Cynthia Kenyon. (2007) 2007. “Tissue Entrainment by Feedback Regulation of Insulin Gene Expression in the Endoderm of Caenorhabditis Elegans.”. Proc Natl Acad Sci U S A 104 (48): 19046-50.

Rizki, Gizem, Terri Naoko Iwata, Ji Li, Christian G Riedel, Colette Lafontaine Picard, Max Jan, Coleen T Murphy, and Siu Sylvia Lee. (2011) 2011. “The Evolutionarily Conserved Longevity Determinants HCF-1 and SIR-2.1 SIRT1 Collaborate to Regulate DAF-16 FOXO.”. PLoS Genet 7 (9): e1002235.

DiLoreto, Race, and Coleen T Murphy. (2015) 2015. “The Cell Biology of Aging.”. Mol Biol Cell 26 (25): 4524-31. doi:10.1091/mbc.E14-06-1084.

Luo, Shijing, Gunnar A Kleemann, Jasmine M Ashraf, Wendy M Shaw, and Coleen T Murphy. (2010) 2010. “TGF-β and Insulin Signaling Regulate Reproductive Aging via Oocyte and Germline Quality Maintenance.”. Cell 143 (2): 299-312.

Kenyon, Cynthia, and Coleen T Murphy. (2006) 2006. “Enrichment of Regulatory Motifs Upstream of Predicted DAF-16 Targets.”. Nat Genet 38 (4): 397-8; author reply 398.

Li, Ling-Bo, Haoyun Lei, Rachel Arey, Pengpeng Li, Jianfeng Liu, Coleen T Murphy, X Z Shawn Xu, and Kang Shen. (2016) 2016. “The Neuronal Kinesin UNC-104 KIF1A Is a Key Regulator of Synaptic Aging and Insulin Signaling-Regulated Memory.”. Curr Biol 26 (5): 605-15. doi:10.1016/j.cub.2015.12.068.

Luo, Shijing, Wendy M Shaw, Jasmine M Ashraf, and Coleen T Murphy. (2009) 2009. “TGF-Beta Sma Mab Signaling Mutations Uncouple Reproductive Aging from Somatic Aging.”. PLoS Genet 5 (12): e1000789.

Stephens, Greg J, Matthew Bueno de Mesquita, William S Ryu, and William Bialek. (2011) 2011. “Emergence of Long Timescales and Stereotyped Behaviors in Caenorhabditis Elegans.”. Proc Natl Acad Sci U S A 108 (18): 7286-9.

Shi, Cheng, and Coleen T Murphy. (2016) 2016. “Feeding the Germline.”. Genes Dev 30 (3): 249-50. doi:10.1101/gad.276980.115.

Murphy, Coleen T. (2006) 2006. “The Search for DAF-16 FOXO Transcriptional Targets: Approaches and Discoveries.”. Exp Gerontol 41 (10): 910-21.

Liu, Gang, Jason Rogers, Coleen T Murphy, and Christopher Rongo. (2011) 2011. “EGF Signalling Activates the Ubiquitin Proteasome System to Modulate C. Elegans Lifespan.”. EMBO J 30 (15): 2990-3003.

Nguyen, Jeffrey P, Frederick B Shipley, Ashley N Linder, George S Plummer, Mochi Liu, Sagar U Setru, Joshua W Shaevitz, and Andrew M Leifer. (2016) 2016. “Whole-Brain Calcium Imaging With Cellular Resolution in Freely Behaving Caenorhabditis Elegans.”. Proc Natl Acad Sci U S A 113 (8). doi:10.1073/pnas.1507110112.

Kaletsky, Rachel, and Coleen T Murphy. (2010) 2010. “The Role of Insulin IGF-Like Signaling in C. Elegans Longevity and Aging.”. Dis Model Mech 3 (7-8): 415-9.

Stephens, Greg J, Bethany Johnson-Kerner, William Bialek, and William S Ryu. (2008) 2008. “Dimensionality and Dynamics in the Behavior of C. Elegans.”. PLoS Comput Biol 4 (4): e1000028.

Nguyen, Jeffrey P, Ashley N Linder, George S Plummer, Joshua W Shaevitz, and Andrew M Leifer. (2017) 2017. “Automatically Tracking Neurons in a Moving and Deforming Brain.”. PLoS Comput Biol 13 (5): e1005517. doi:10.1371/journal.pcbi.1005517.

Hsu, Ao-Lin, Coleen T Murphy, and Cynthia Kenyon. (2003) 2003. “Regulation of Aging and Age-Related Disease by DAF-16 and Heat-Shock Factor.”. Science 300 (5622): 1142-5.

Tepper, Ronald G, Coleen T Murphy, and Harmen J Bussemaker. (2014) 2014. “DAF-16 and PQM-1: Partners in Longevity.”. Aging (Albany NY) 6 (1): 5-6.

Tepper, Ronald G, Jasmine M Ashraf, Rachel Kaletsky, Gunnar Kleemann, Coleen T Murphy, and Harmen J Bussemaker. (2013) 2013. “PQM-1 Complements DAF-16 As a Key Transcriptional Regulator of DAF-2-Mediated Development and Longevity.”. Cell 154 (3): 676-90.

Oliveira, Riva P, Jess Porter Abate, Kieran Dilks, Jessica Landis, Jasmine M Ashraf, Coleen T Murphy, and Keith Blackwell. (2009) 2009. “Condition-Adapted Stress and Longevity Gene Regulation by Caenorhabditis Elegans SKN-1 Nrf.”. Aging Cell 8 (5): 524-41.

Shi, Cheng, and Coleen T Murphy. (2014) 2014. “Mating Induces Shrinking and Death in Caenorhabditis Mothers.”. Science 343 (6170): 536-40.

McCarroll, Steven A, Coleen T Murphy, Sige Zou, Scott D Pletcher, Chen-Shan Chin, Yuh Nung Jan, Cynthia Kenyon, Cornelia I Bargmann, and Hao Li. (2004) 2004. “Comparing Genomic Expression Patterns across Species Identifies Shared Transcriptional Profile in Aging.”. Nat Genet 36 (2): 197-204.

Landis, Jessica N, and Coleen T Murphy. (2010) 2010. “Integration of Diverse Inputs in the Regulation of Caenorhabditis Elegans DAF-16 FOXO.”. Dev Dyn 239 (5): 1405-12.

Luo, Shijing, and Coleen T Murphy. (2011) 2011. “Caenorhabditis Elegans Reproductive Aging: Regulation and Underlying Mechanisms.”. Genesis 49 (2): 53-65.

Kauffman, Amanda L, Jasmine M Ashraf, Ryan Corces-Zimmerman, Jessica N Landis, and Coleen T Murphy. (2010) 2010. “Insulin Signaling and Dietary Restriction Differentially Influence the Decline of Learning and Memory With Age.”. PLoS Biol 8 (5): e1000372.

Shaw, Wendy M, Shijing Luo, Jessica Landis, Jasmine M Ashraf, and Coleen T Murphy. (2007) 2007. “The C. Elegans TGF-Beta Dauer Pathway Regulates Longevity via Insulin Signaling.”. Curr Biol 17 (19): 1635-45.

Lee, Seung-Jae, Coleen T Murphy, and Cynthia Kenyon. (2009) 2009. “Glucose Shortens the Life Span of C. Elegans by Downregulating DAF-16 FOXO Activity and Aquaporin Gene Expression.”. Cell Metab 10 (5): 379-91.

Dawes-Hoang, Rachel E, Jennifer A Zallen, and Eric F Wieschaus. (2003) 2003. “Bringing Classical Embryology to C Elegans Gastrulation.”. Dev Cell 4 (1): 6-8.