Grimm, Oliver, Victoria Sanchez Zini, Yoosik Kim, Jordi Casanova, Stanislav Y Shvartsman, and Eric Wieschaus. (2012) 2012. “Torso RTK Controls Capicua Degradation by Changing Its Subcellular Localization.”. Development 139 (21): 3962-8.

Lembong, Jessica, Nir Yakoby, and Stanislav Y Shvartsman. (2009) 2009. “Pattern Formation by Dynamically Interacting Network Motifs.”. Proc Natl Acad Sci U S A 106 (9): 3213-8.

Grosshans, J, and E Wieschaus. (2000) 2000. “A Genetic Link Between Morphogenesis and Cell Division During Formation of the Ventral Furrow in Drosophila.”. Cell 101 (5): 523-31.

Yakoby, Nir, Jessica Lembong, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “Drosophila Eggshell Is Patterned by Sequential Action of Feedforward and Feedback Loops.”. Development 135 (2): 343-51.

Rushlow, Christine A, and Stanislav Y Shvartsman. (2012) 2012. “Temporal Dynamics, Spatial Range, and Transcriptional Interpretation of the Dorsal Morphogen Gradient.”. Curr Opin Genet Dev 22 (6): 542-6.

Zartman, Jeremiah J, Lily S Cheung, Matthew G Niepielko, Christine Bonini, Benjamin Haley, Nir Yakoby, and Stanislav Y Shvartsman. (2011) 2011. “Pattern Formation by a Moving Morphogen Source.”. Phys Biol 8 (4): 045003.

Levine, Michael, and Eric H Davidson. (2005) 2005. “Gene Regulatory Networks for Development.”. Proc Natl Acad Sci U S A 102 (14): 4936-42.

De Renzis, Stefano, J Yu, R Zinzen, and Eric Wieschaus. (2006) 2006. “Dorsal-Ventral Pattern of Delta Trafficking Is Established by a Snail-Tom-Neuralized Pathway.”. Dev Cell 10 (2): 257-64.

Gregor, Thomas, Eric F Wieschaus, Alistair P McGregor, William Bialek, and David W Tank. (2007) 2007. “Stability and Nuclear Dynamics of the Bicoid Morphogen Gradient.”. Cell 130 (1): 141-52.

Coppey, Mathieu, Alistair N Boettiger, Alexander M Berezhkovskii, and Stanislav Y Shvartsman. (2008) 2008. “Nuclear Trapping Shapes the Terminal Gradient in the Drosophila Embryo.”. Curr Biol 18 (12): 915-9.

Little, Shawn C, Gašper Tkačik, Thomas B Kneeland, Eric F Wieschaus, and Thomas Gregor. (2011) 2011. “The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized MRNA.”. PLoS Biol 9 (3): e1000596.

Stathopoulos, Angelike, and Michael Levine. (2002) 2002. “Dorsal Gradient Networks in the Drosophila Embryo.”. Dev Biol 246 (1): 57-67.

Bothma, Jacques P, Joe Magliocco, and Michael Levine. (2011) 2011. “The Snail Repressor Inhibits Release, Not Elongation, of Paused Pol II in the Drosophila Embryo.”. Curr Biol 21 (18): 1571-7.

Stolfi, Alberto, Eileen Wagner, Matthew Taliaferro, Seemay Chou, and Michael Levine. (2011) 2011. “Neural Tube Patterning by Ephrin, FGF and Notch Signaling Relays.”. Development 138 (24): 5429-39.

Dawes-Hoang, Rachel E, Kush M Parmar, Audrey E Christiansen, Chris B Phelps, Andrea H Brand, and Eric F Wieschaus. (2005) 2005. “Folded Gastrulation, Cell Shape Change and the Control of Myosin Localization.”. Development 132 (18): 4165-78.

Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Discrete Models of Autocrine Cell Communication in Epithelial Layers.”. Biophys J 84 (6): 3624-35.

Gregor, Thomas, Alistair P McGregor, and Eric F Wieschaus. (2008) 2008. “Shape and Function of the Bicoid Morphogen Gradient in Dipteran Species With Different Sized Embryos.”. Dev Biol 316 (2): 350-8.

Sample, Christine, and Stanislav Y Shvartsman. (2010) 2010. “Multiscale Modeling of Diffusion in the Early Drosophila Embryo.”. Proc Natl Acad Sci U S A 107 (22): 10092-6.

Abouchar, Laurent, Mariela D Petkova, Cynthia R Steinhardt, and Thomas Gregor. (2014) 2014. “Fly Wing Vein Patterns Have Spatial Reproducibility of a Single Cell.”. J R Soc Interface 11 (97): 20140443.

Gregor, Thomas, William Bialek, Rob R de Ruyter van Steveninck, David W Tank, and Eric F Wieschaus. (2005) 2005. “Diffusion and Scaling During Early Embryonic Pattern Formation.”. Proc Natl Acad Sci U S A 102 (51): 18403-7.

Hong, Joung-Woo, David A Hendrix, and Michael S Levine. (2008) 2008. “Shadow Enhancers As a Source of Evolutionary Novelty.”. Science 321 (5894): 1314.

Perry, Michael W, Alistair N Boettiger, and Michael Levine. (2011) 2011. “Multiple Enhancers Ensure Precision of Gap Gene-Expression Patterns in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 108 (33): 13570-5.

Wagner, Eileen, and Michael Levine. (2012) 2012. “FGF Signaling Establishes the Anterior Border of the Ciona Neural Tube.”. Development 139 (13): 2351-9.

Bothma, Jacques P, and Michael Levine. (2013) 2013. “Development: Lights, Camera, Action--the Drosophila Embryo Goes Live!”. Curr Biol 23 (21).

Helman, Aharon, Bomyi Lim, María José Andreu, Yoosik Kim, Tatyana Shestkin, Hang Lu, Gerardo Jiménez, Stanislav Y Shvartsman, and Ze’ev Paroush. (2012) 2012. “RTK Signaling Modulates the Dorsal Gradient.”. Development 139 (16): 3032-9.

Coppey, Mathieu, Alexander M Berezhkovskii, Yoosik Kim, Alistair N Boettiger, and Stanislav Y Shvartsman. (2007) 2007. “Modeling the Bicoid Gradient: Diffusion and Reversible Nuclear Trapping of a Stable Protein.”. Dev Biol 312 (2): 623-30.

Zartman, Jeremiah J, Jitendra S Kanodia, Lily S Cheung, and Stanislav Y Shvartsman. (2009) 2009. “Feedback Control of the EGFR Signaling Gradient: Superposition of Domain-Splitting Events in Drosophila Oogenesis.”. Development 136 (17): 2903-11.

Markstein, Michele, and Michael Levine. (2002) 2002. “Decoding Cis-Regulatory DNAs in the Drosophila Genome.”. Curr Opin Genet Dev 12 (5): 601-6.

Chopra, Vivek S, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Regulation of Hox Gene Activity by Transcriptional Elongation in Drosophila.”. Curr Biol 19 (8): 688-93.

Shvartsman, Stanislav Y, Cyrill B Muratov, and Douglas A Lauffenburger. (2002) 2002. “Modeling and Computational Analysis of EGF Receptor-Mediated Cell Communication in Drosophila Oogenesis.”. Development 129 (11): 2577-89.

Zartman, Jeremiah J, Jitendra S Kanodia, Nir Yakoby, Xenia Schafer, Colin Watson, Karin Schlichting, Christian Dahmann, and Stanislav Y Shvartsman. (2009) 2009. “Expression Patterns of Cadherin Genes in Drosophila Oogenesis.”. Gene Expr Patterns 9 (1): 31-6.

Cande, Jessica Doran, Yury Goltsev, and Michael S Levine. (2009) 2009. “Conservation of Enhancer Location in Divergent Insects.”. Proc Natl Acad Sci U S A 106 (34): 14414-9.

Reeves, Gregory T, Cyrill B Muratov, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantitative Models of Developmental Pattern Formation.”. Dev Cell 11 (3): 289-300.

Kim, Yoosik, Mathieu Coppey, Rona Grossman, Leiore Ajuria, Gerardo Jiménez, Ze’ev Paroush, and Stanislav Y Shvartsman. (2010) 2010. “MAPK Substrate Competition Integrates Patterning Signals in the Drosophila Embryo.”. Curr Biol 20 (5): 446-51.

Berman, Benjamin P, Yutaka Nibu, Barret D Pfeiffer, Pavel Tomancak, Susan E Celniker, Michael Levine, Gerald M Rubin, and Michael B Eisen. (2002) 2002. “Exploiting Transcription Factor Binding Site Clustering to Identify Cis-Regulatory Modules Involved in Pattern Formation in the Drosophila Genome.”. Proc Natl Acad Sci U S A 99 (2): 757-62.

Reeves, Gregory T, Rachel Kalifa, Daryl E Klein, Mark A Lemmon, and Stanislav Y Shvartsman. (2005) 2005. “Computational Analysis of EGFR Inhibition by Argos.”. Dev Biol 284 (2): 523-35.

Garcia, Hernan G, Mikhail Tikhonov, Albert Lin, and Thomas Gregor. (2013) 2013. “Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning.”. Curr Biol 23 (21): 2140-5.

Stathopoulos, Angelike, and Michael Levine. (2005) 2005. “Localized Repressors Delineate the Neurogenic Ectoderm in the Early Drosophila Embryo.”. Dev Biol 280 (2): 482-93.

Houchmandzadeh, Bahram, Eric Wieschaus, and Stanislas Leibler. (2002) 2002. “Establishment of Developmental Precision and Proportions in the Early Drosophila Embryo.”. Nature 415 (6873): 798-802.

Biemar, Frédéric, David A Nix, Jessica Piel, Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, Robert Manak, and Michael S Levine. (2006) 2006. “Comprehensive Identification of Drosophila Dorsal-Ventral Patterning Genes Using a Whole-Genome Tiling Array.”. Proc Natl Acad Sci U S A 103 (34): 12763-8.

Papatsenko, Dmitri, and Michael Levine. (2005) 2005. “Quantitative Analysis of Binding Motifs Mediating Diverse Spatial Readouts of the Dorsal Gradient in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 102 (14): 4966-71.

Gordon, Peter, V, Christine Sample, Alexander M Berezhkovskii, Cyrill B Muratov, and Stanislav Y Shvartsman. (2011) 2011. “Local Kinetics of Morphogen Gradients.”. Proc Natl Acad Sci U S A 108 (15): 6157-62.

Haupaix, Nicolas, Philip Barron Abitua, Cathy Sirour, Hitoyoshi Yasuo, Michael Levine, and Clare Hudson. (2014) 2014. “Ephrin-Mediated Restriction of ERK1 2 Activity Delimits the Number of Pigment Cells in the Ciona CNS.”. Dev Biol 394 (1): 170-80.

Kavousanakis, Michail E, Jitendra S Kanodia, Yoosik Kim, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2010) 2010. “A Compartmental Model for the Bicoid Gradient.”. Dev Biol 345 (1): 12-7.

Khan, Zia, Yu-Chiun Wang, Eric F Wieschaus, and Matthias Kaschube. (2014) 2014. “Quantitative 4D Analyses of Epithelial Folding During Drosophila Gastrulation.”. Development 141 (14): 2895-900.

Stathopoulos, Angelike, and Michael Levine. (2002) 2002. “Linear Signaling in the Toll-Dorsal Pathway of Drosophila: Activated Pelle Kinase Specifies All Threshold Outputs of Gene Expression While the BHLH Protein Twist Specifies a Subset.”. Development 129 (14): 3411-9.

Simakov, David S A, Lily S Cheung, Len M Pismen, and Stanislav Y Shvartsman. (2012) 2012. “EGFR-Dependent Network Interactions That Pattern Drosophila Eggshell Appendages.”. Development 139 (15): 2814-20.

Cole, Susan E, John M Levorse, Shirley M Tilghman, and Thomas F Vogt. (2002) 2002. “Clock Regulatory Elements Control Cyclic Expression of Lunatic Fringe During Somitogenesis.”. Dev Cell 3 (1): 75-84.

Stathopoulos, Angelike, Madeleine Van Drenth, Albert Erives, Michele Markstein, and Michael Levine. (2002) 2002. “Whole-Genome Analysis of Dorsal-Ventral Patterning in the Drosophila Embryo.”. Cell 111 (5): 687-701.

Stathopoulos, Angelike, Bergin Tam, Matthew Ronshaugen, Manfred Frasch, and Michael Levine. (2004) 2004. “Pyramus and Thisbe: FGF Genes That Pattern the Mesoderm of Drosophila Embryos.”. Genes Dev 18 (6): 687-99.