Emerson, J A, J Vacher, L A Cirillo, S M Tilghman, and A L Tyner. (1992) 1992. “The Zonal Expression of Alpha-Fetoprotein Transgenes in the Livers of Adult Mice.”. Dev Dyn 195 (1): 55-66.

Zallen, Jennifer A, Yehudit Cohen, Andrew M Hudson, Lynn Cooley, Eric Wieschaus, and Eyal D Schejter. (2002) 2002. “SCAR Is a Primary Regulator of Arp2 3-Dependent Morphological Events in Drosophila.”. J Cell Biol 156 (4): 689-701.

Andolfatto, Peter, Mark Scriber, and Brian Charlesworth. (2003) 2003. “No Association Between Mitochondrial DNA Haplotypes and a Female-Limited Mimicry Phenotype in Papilio Glaucus.”. Evolution 57 (2): 305-16.

Vrana, P B, X J Guan, R S Ingram, and S M Tilghman. (1998) 1998. “Genomic Imprinting Is Disrupted in Interspecific Peromyscus Hybrids.”. Nat Genet 20 (4): 362-5.

van Raamsdonk, C D, and S M Tilghman. (2000) 2000. “Dosage Requirement and Allelic Expression of PAX6 During Lens Placode Formation.”. Development 127 (24): 5439-48.

Farley, Emma K, Katrina M Olson, Wei Zhang, Alexander J Brandt, Daniel S Rokhsar, and Michael S Levine. (2015) 2015. “Suboptimization of Developmental Enhancers.”. Science 350 (6258): 325-8.

Thornton, Kevin, Doris Bachtrog, and Peter Andolfatto. (2006) 2006. “X Chromosomes and Autosomes Evolve at Similar Rates in Drosophila: No Evidence for Faster-X Protein Evolution.”. Genome Res 16 (4): 498-504.

Fisk, Dianna G, Catherine A Ball, Kara Dolinski, Stacia R Engel, Eurie L Hong, Laurie Issel-Tarver, Katja Schwartz, et al. (2006) 2006. “Saccharomyces Cerevisiae S288C Genome Annotation: A Working Hypothesis.”. Yeast 23 (12): 857-65.

Hilgers, Valérie, Michael W Perry, David Hendrix, Alexander Stark, Michael Levine, and Benjamin Haley. (2011) 2011. “Neural-Specific Elongation of 3’ UTRs During Drosophila Development.”. Proc Natl Acad Sci U S A 108 (38): 15864-9.

Rossi, J M, D T Burke, J C Leung, D S Koos, H Chen, and S M Tilghman. (1992) 1992. “Genomic Analysis Using a Yeast Artificial Chromosome Library With Mouse DNA Inserts.”. Proc Natl Acad Sci U S A 89 (6): 2456-60.

Schmidt, J, V, P G Matteson, B K Jones, X J Guan, and S M Tilghman. (2000) 2000. “The Dlk1 and Gtl2 Genes Are Linked and Reciprocally Imprinted.”. Genes Dev 14 (16): 1997-2002.

Papazyan, Romeo, Zheng Sun, Yong Hoon Kim, Paul M Titchenell, David A Hill, Wenyun Lu, Manashree Damle, et al. (2016) 2016. “Physiological Suppression of Lipotoxic Liver Damage by Complementary Actions of HDAC3 and SCAP SREBP.”. Cell Metab 24 (6): 863-74. doi:10.1016/j.cmet.2016.10.012.

Chen, Xin, Suet Y Leung, Siu T Yuen, Kent-Man Chu, Jiafu Ji, Rui Li, Annie S Y Chan, et al. (2003) 2003. “Variation in Gene Expression Patterns in Human Gastric Cancers.”. Mol Biol Cell 14 (8): 3208-15.

Markstein, Michele, Robert Zinzen, Peter Markstein, Ka-Ping Yee, Albert Erives, Angela Stathopoulos, and Michael Levine. (2004) 2004. “A Regulatory Code for Neurogenic Gene Expression in the Drosophila Embryo.”. Development 131 (10): 2387-94.

Tu, Kimberly C, Tao Long, Sine L Svenningsen, Ned S Wingreen, and Bonnie L Bassler. (2010) 2010. “Negative Feedback Loops Involving Small Regulatory RNAs Precisely Control the Vibrio Harveyi Quorum-Sensing Response.”. Mol Cell 37 (4): 567-79.

Markstein, Michele, Peter Markstein, Vicky Markstein, and Michael S Levine. (2002) 2002. “Genome-Wide Analysis of Clustered Dorsal Binding Sites Identifies Putative Target Genes in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 99 (2): 763-8.

Leighton, P A, R S Ingram, J Eggenschwiler, A Efstratiadis, and S M Tilghman. (1995) 1995. “Disruption of Imprinting Caused by Deletion of the H19 Gene Region in Mice.”. Nature 375 (6526): 34-9.

Cao, Chen, Laurence A Lemaire, Wei Wang, Peter H Yoon, Yoolim A Choi, Lance R Parsons, John C Matese, Wei Wang, Michael Levine, and Kai Chen. (2019) 2019. “Comprehensive Single-Cell Transcriptome Lineages of a Proto-Vertebrate.”. Nature 571 (7765): 349-54. doi:10.1038/s41586-019-1385-y.

De Renzis, Stefano, Olivier Elemento, Saeed Tavazoie, and Eric F Wieschaus. (2007) 2007. “Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo.”. PLoS Biol 5 (5): e117.

McIsaac, Scott, Benjamin L Oakes, David Botstein, and Marcus B Noyes. 2013. “Rapid Synthesis and Screening of Chemically Activated Transcription Factors With GFP-Based Reporters.”. J Vis Exp, no. 81: e51153.

Rowe, Kevin C, Sonal Singhal, Matthew D Macmanes, Julien Ayroles, Toni Lyn Morelli, Emily M Rubidge, Ke Bi, and Craig C Moritz. (2011) 2011. “Museum Genomics: Low-Cost and High-Accuracy Genetic Data from Historical Specimens.”. Mol Ecol Resour 11 (6): 1082-92.

Garrigan, Daniel, Sarah B Kingan, Anthony J Geneva, Peter Andolfatto, Andrew Clark, Kevin R Thornton, and Daven C Presgraves. (2012) 2012. “Genome Sequencing Reveals Complex Speciation in the Drosophila Simulans Clade.”. Genome Res 22 (8): 1499-511.

Cleary, M A, C D van Raamsdonk, J Levorse, B Zheng, A Bradley, and S M Tilghman. (2001) 2001. “Disruption of an Imprinted Gene Cluster by a Targeted Chromosomal Translocation in Mice.”. Nat Genet 29 (1): 78-82.

Yoo-Warren, H, , R S Ingram, and S M Tilghman. (1988) 1988. “Two Regulatory Domains Flank the Mouse H19 Gene.”. Mol Cell Biol 8 (11): 4707-15.

Vacher, J, S A Camper, R Krumlauf, R S Compton, and S M Tilghman. (1992) 1992. “Raf Regulates the Postnatal Repression of the Mouse Alpha-Fetoprotein Gene at the Posttranscriptional Level.”. Mol Cell Biol 12 (2): 856-64.

Haddrill, Penelope R, Kevin R Thornton, Brian Charlesworth, and Peter Andolfatto. (2005) 2005. “Multilocus Patterns of Nucleotide Variability and the Demographic and Selection History of Drosophila Melanogaster Populations.”. Genome Res 15 (6): 790-9.

Rossi, J M, H Chen, and S M Tilghman. (1994) 1994. “Genetic Map of the Fused Locus on Mouse Chromosome 17.”. Genomics 23 (1): 178-84.

Putnam, Andrea S, Mark Scriber, and Peter Andolfatto. (2007) 2007. “Discordant Divergence Times Among Z-Chromosome Regions Between Two Ecologically Distinct Swallowtail Butterfly Species.”. Evolution 61 (4): 912-27.

Vasicek, T J, L Zeng, X J Guan, T Zhang, F Costantini, and S M Tilghman. (1997) 1997. “Two Dominant Mutations in the Mouse Fused Gene Are the Result of Transposon Insertions.”. Genetics 147 (2): 777-86.

Papatsenko, Dmitri, and Michael Levine. (2005) 2005. “Quantitative Analysis of Binding Motifs Mediating Diverse Spatial Readouts of the Dorsal Gradient in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 102 (14): 4966-71.

Millonig, J H, J A Emerson, J M Levorse, and S M Tilghman. (1995) 1995. “Molecular Analysis of the Distal Enhancer of the Mouse Alpha-Fetoprotein Gene.”. Mol Cell Biol 15 (7): 3848-56.

Sandell, Lisa L, Xiao-Juan Guan, Robert Ingram, and Shirley M Tilghman. (2003) 2003. “Gatm, a Creatine Synthesis Enzyme, Is Imprinted in Mouse Placenta.”. Proc Natl Acad Sci U S A 100 (8): 4622-7.

Pane, Attilio, Peng Jiang, Dorothy Yanling Zhao, Mona Singh, and Trudi Schüpbach. (2011) 2011. “The Cutoff Protein Regulates PiRNA Cluster Expression and PiRNA Production in the Drosophila Germline.”. EMBO J 30 (22): 4601-15.

Lossos, Izidore S, Ash A Alizadeh, Maximilian Diehn, Roger Warnke, Yvonne Thorstenson, Peter J Oefner, Patrick O Brown, David Botstein, and Ronald Levy. (2002) 2002. “Transformation of Follicular Lymphoma to Diffuse Large-Cell Lymphoma: Alternative Patterns With Increased or Decreased Expression of C-Myc and Its Regulated Genes.”. Proc Natl Acad Sci U S A 99 (13): 8886-91.

Costa, M, E T Wilson, and E Wieschaus. (1994) 1994. “A Putative Cell Signal Encoded by the Folded Gastrulation Gene Coordinates Cell Shape Changes During Drosophila Gastrulation.”. Cell 76 (6): 1075-89.

Riggleman, B, E Wieschaus, and P Schedl. (1989) 1989. “Molecular Analysis of the Armadillo Locus: Uniformly Distributed Transcripts and a Protein With Novel Internal Repeats Are Associated With a Drosophila Segment Polarity Gene.”. Genes Dev 3 (1): 96-113.

Bowman, Aaron B, John M Levorse, Robert S Ingram, and Shirley M Tilghman. (2003) 2003. “Functional Characterization of a Testis-Specific DNA Binding Activity at the H19 Igf2 Imprinting Control Region.”. Mol Cell Biol 23 (22): 8345-51.

Keys, David N, Michael Levine, Richard M Harland, and John B Wallingford. (2002) 2002. “Control of Intercalation Is Cell-Autonomous in the Notochord of Ciona Intestinalis.”. Dev Biol 246 (2): 329-40.

Shakoury-Elizeh, Minoo, John Tiedeman, Jared Rashford, Tracey Ferea, Janos Demeter, Emily Garcia, Ronda Rolfes, Patrick O Brown, David Botstein, and Caroline C Philpott. (2004) 2004. “Transcriptional Remodeling in Response to Iron Deprivation in Saccharomyces Cerevisiae.”. Mol Biol Cell 15 (3): 1233-43.

Hendrix, David A, Joung-Woo Hong, Julia Zeitlinger, Daniel S Rokhsar, and Michael S Levine. (2008) 2008. “Promoter Elements Associated With RNA Pol II Stalling in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 105 (22): 7762-7.

Coulter, D E, E A Swaykus, M A Beran-Koehn, D Goldberg, E Wieschaus, and P Schedl. (1990) 1990. “Molecular Analysis of Odd-Skipped, a Zinc Finger Encoding Segmentation Gene With a Novel Pair-Rule Expression Pattern.”. EMBO J 9 (11): 3795-804.

Katz, David J, Michael A Beer, John M Levorse, and Shirley M Tilghman. (2005) 2005. “Functional Characterization of a Novel Ku70 80 Pause Site at the H19 Igf2 Imprinting Control Region.”. Mol Cell Biol 25 (10): 3855-63.

Kim, Yoosik, Antonina Iagovitina, Keisuke Ishihara, Kate M Fitzgerald, Bart Deplancke, Dmitri Papatsenko, and Stanislav Y Shvartsman. (2013) 2013. “Context-Dependent Transcriptional Interpretation of Mitogen Activated Protein Kinase Signaling in the Drosophila Embryo.”. Chaos 23 (2): 025105.

Fuchs, Alisa, Lily S Cheung, Enrica Charbonnier, Stanislav Y Shvartsman, and George Pyrowolakis. (2012) 2012. “Transcriptional Interpretation of the EGF Receptor Signaling Gradient.”. Proc Natl Acad Sci U S A 109 (5): 1572-7.

Brannan, C I, E C Dees, R S Ingram, and S M Tilghman. (1990) 1990. “The Product of the H19 Gene May Function As an RNA.”. Mol Cell Biol 10 (1): 28-36.

Hendrix, David, Michael Levine, and Weiyang Shi. 2010. “MiRTRAP, a Computational Method for the Systematic Identification of MiRNAs from High Throughput Sequencing Data.”. Genome Biol 11 (4): R39.

Godbout, R, R S Ingram, and S M Tilghman. (1988) 1988. “Fine-Structure Mapping of the Three Mouse Alpha-Fetoprotein Gene Enhancers.”. Mol Cell Biol 8 (3): 1169-78.

Papatsenko, Dmitri, Andrey Kislyuk, Michael Levine, and Inna Dubchak. (2006) 2006. “Conservation Patterns in Different Functional Sequence Categories of Divergent Drosophila Species.”. Genomics 88 (4): 431-42.

Feuerman, M H, R Godbout, R S Ingram, and S M Tilghman. (1989) 1989. “Tissue-Specific Transcription of the Mouse Alpha-Fetoprotein Gene Promoter Is Dependent on HNF-1.”. Mol Cell Biol 9 (10): 4204-12.

Peifer, M, and E Wieschaus. (1993) 1993. “The Product of the Drosophila Melanogaster Segment Polarity Gene Armadillo Is Highly Conserved in Sequence and Expression in the Housefly Musca Domestica.”. J Mol Evol 36 (3): 224-33.