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Bacterial Proteins

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  • Waters, Christopher M, Wenyun Lu, Joshua D Rabinowitz, and Bonnie L Bassler. (2008) 2008. “Quorum Sensing Controls Biofilm Formation in Vibrio Cholerae through Modulation of Cyclic Di-GMP Levels and Repression of VpsT.”. J Bacteriol 190 (7): 2527-36.
    Reference Link
  • Mignot, Tâm, Joshua W Shaevitz, Patricia L Hartzell, and David R Zusman. (2007) 2007. “Evidence That Focal Adhesion Complexes Power Bacterial Gliding Motility.”. Science 315 (5813): 853-6.
    Reference Link
  • Long, Tao, Kimberly C Tu, Yufang Wang, Pankaj Mehta, N P Ong, Bonnie L Bassler, and Ned S Wingreen. (2009) 2009. “Quantifying the Integration of Quorum-Sensing Signals With Single-Cell Resolution.”. PLoS Biol 7 (3): e68.
    Reference Link
  • Yuan, Jie, and Joshua D Rabinowitz. (2007) 2007. “Differentiating Metabolites Formed from De Novo Synthesis Versus Macromolecule Decomposition.”. J Am Chem Soc 129 (30): 9294-5.
    Reference Link
  • Wang, Yufang, Kimberly C Tu, N P Ong, Bonnie L Bassler, and Ned S Wingreen. (2011) 2011. “Protein-Level Fluctuation Correlation at the Microcolony Level and Its Application to the Vibrio Harveyi Quorum-Sensing Circuit.”. Biophys J 100 (12): 3045-53.
    Reference Link
  • Neumann, Silke, Clinton H Hansen, Ned S Wingreen, and Victor Sourjik. (2010) 2010. “Differences in Signalling by Directly and Indirectly Binding Ligands in Bacterial Chemotaxis.”. EMBO J 29 (20): 3484-95.
    Reference Link
  • Ng, Wai-Leung, Yunzhou Wei, Lark J Perez, Jianping Cong, Tao Long, Matthew Koch, Martin F Semmelhack, Ned S Wingreen, and Bonnie L Bassler. (2010) 2010. “Probing Bacterial Transmembrane Histidine Kinase Receptor-Ligand Interactions With Natural and Synthetic Molecules.”. Proc Natl Acad Sci U S A 107 (12): 5575-80.
    Reference Link
  • Swem, Lee R, Danielle L Swem, Ned S Wingreen, and Bonnie L Bassler. (2008) 2008. “Deducing Receptor Signaling Parameters from in Vivo Analysis: LuxN AI-1 Quorum Sensing in Vibrio Harveyi.”. Cell 134 (3): 461-73.
    Reference Link
  • Meir, Yigal, Vladimir Jakovljevic, Olga Oleksiuk, Victor Sourjik, and Ned S Wingreen. (2010) 2010. “Precision and Kinetics of Adaptation in Bacterial Chemotaxis.”. Biophys J 99 (9): 2766-74.
    Reference Link
  • Jim, Kam, Kush Parmar, Mona Singh, and Saeed Tavazoie. (2004) 2004. “A Cross-Genomic Approach for Systematic Mapping of Phenotypic Traits to Genes.”. Genome Res 14 (1): 109-15.
    Reference Link
  • Endres, Robert G, and Ned S Wingreen. (2006) 2006. “Precise Adaptation in Bacterial Chemotaxis through ‘assistance neighborhoods’.”. Proc Natl Acad Sci U S A 103 (35): 13040-4.
    Reference Link
  • Broedersz, Chase P, Xindan Wang, Yigal Meir, Joseph J Loparo, David Z Rudner, and Ned S Wingreen. (2014) 2014. “Condensation and Localization of the Partitioning Protein ParB on the Bacterial Chromosome.”. Proc Natl Acad Sci U S A 111 (24): 8809-14.
    Reference Link
  • Mora, Thierry, Fan Bai, Yong-Suk Che, Tohru Minamino, Keiichi Namba, and Ned S Wingreen. (2011) 2011. “Non-Genetic Individuality in Escherichia Coli Motor Switching.”. Phys Biol 8 (2): 024001.
    Reference Link
  • Endres, Robert G, Joseph J Falke, and Ned S Wingreen. (2007) 2007. “Chemotaxis Receptor Complexes: From Signaling to Assembly.”. PLoS Comput Biol 3 (7): e150.
    Reference Link
  • Tu, Kimberly C, Tao Long, Sine L Svenningsen, Ned S Wingreen, and Bonnie L Bassler. (2010) 2010. “Negative Feedback Loops Involving Small Regulatory RNAs Precisely Control the Vibrio Harveyi Quorum-Sensing Response.”. Mol Cell 37 (4): 567-79.
    Reference Link
  • Hansen, Clinton H, Robert G Endres, and Ned S Wingreen. (2008) 2008. “Chemotaxis in Escherichia Coli: A Molecular Model for Robust Precise Adaptation.”. PLoS Comput Biol 4 (1): e1.
    Reference Link
  • Huang, Kerwyn Casey, and Ned S Wingreen. (2004) 2004. “Min-Protein Oscillations in Round Bacteria.”. Phys Biol 1 (3-4): 229-35.
    Reference Link
  • Wang, Siyuan, and Ned S Wingreen. (2013) 2013. “Cell Shape Can Mediate the Spatial Organization of the Bacterial Cytoskeleton.”. Biophys J 104 (3): 541-52.
    Reference Link
  • Ureta, Alejandro R, Robert G Endres, Ned S Wingreen, and Thomas J Silhavy. (2007) 2007. “Kinetic Analysis of the Assembly of the Outer Membrane Protein LamB in Escherichia Coli Mutants Each Lacking a Secretion or Targeting Factor in a Different Cellular Compartment.”. J Bacteriol 189 (2): 446-54.
    Reference Link
  • Teng, Shu-Wen, Jessica N Schaffer, Kimberly C Tu, Pankaj Mehta, Wenyun Lu, N P Ong, Bonnie L Bassler, and Ned S Wingreen. (2011) 2011. “Active Regulation of Receptor Ratios Controls Integration of Quorum-Sensing Signals in Vibrio Harveyi.”. Mol Syst Biol 7: 491.
    Reference Link
  • Vincent, A, J T Blankenship, and E Wieschaus. (1997) 1997. “Integration of the Head and Trunk Segmentation Systems Controls Cephalic Furrow Formation in Drosophila.”. Development 124 (19): 3747-54.
    Reference Link
  • Mignot, Tâm, and Joshua W Shaevitz. (2008) 2008. “Active and Passive Mechanisms of Intracellular Transport and Localization in Bacteria.”. Curr Opin Microbiol 11 (6): 580-5.
    Reference Link
  • Pompeani, Audra J, Joseph J Irgon, Michael F Berger, Martha L Bulyk, Ned S Wingreen, and Bonnie L Bassler. (2008) 2008. “The Vibrio Harveyi Master Quorum-Sensing Regulator, LuxR, a TetR-Type Protein Is Both an Activator and a Repressor: DNA Recognition and Binding Specificity at Target Promoters.”. Mol Microbiol 70 (1): 76-88.
    Reference Link
  • van Teeffelen, Sven, Joshua W Shaevitz, and Zemer Gitai. (2012) 2012. “Image Analysis in Fluorescence Microscopy: Bacterial Dynamics As a Case Study.”. Bioessays 34 (5): 427-36.
    Reference Link
  • Khan, Zia, Sasan Amini, Joshua S Bloom, Cristian Ruse, Amy A Caudy, Leonid Kruglyak, Mona Singh, David H Perlman, and Saeed Tavazoie. 2011. “Accurate Proteome-Wide Protein Quantification from High-Resolution 15N Mass Spectra.”. Genome Biol 12 (12): R122.
    Reference Link
  • Endres, Robert G, Olga Oleksiuk, Clinton H Hansen, Yigal Meir, Victor Sourjik, and Ned S Wingreen. 2008. “Variable Sizes of Escherichia Coli Chemoreceptor Signaling Teams.”. Mol Syst Biol 4: 211.
    Reference Link
  • Emberly, Eldon, and Ned S Wingreen. (2006) 2006. “Hourglass Model for a Protein-Based Circadian Oscillator.”. Phys Rev Lett 96 (3): 038303.
    Reference Link
  • Bartlett, Thomas M, Benjamin P Bratton, Amit Duvshani, Amanda Miguel, Ying Sheng, Nicholas R Martin, Jeffrey P Nguyen, et al. (2017) 2017. “A Periplasmic Polymer Curves Vibrio Cholerae and Promotes Pathogenesis.”. Cell 168 (1-2): 172-185.e15. doi:10.1016/j.cell.2016.12.019.
    Reference Link
  • Mora, Thierry, Howard Yu, Yoshiyuki Sowa, and Ned S Wingreen. (2009) 2009. “Steps in the Bacterial Flagellar Motor.”. PLoS Comput Biol 5 (10): e1000540.
    Reference Link
  • Wang, Siyuan, Leon Furchtgott, Kerwyn Casey Huang, and Joshua W Shaevitz. (2012) 2012. “Helical Insertion of Peptidoglycan Produces Chiral Ordering of the Bacterial Cell Wall.”. Proc Natl Acad Sci U S A 109 (10).
    Reference Link
  • Greenfield, Derek, Ann L McEvoy, Hari Shroff, Gavin E Crooks, Ned S Wingreen, Eric Betzig, and Jan Liphardt. (2009) 2009. “Self-Organization of the Escherichia Coli Chemotaxis Network Imaged With Super-Resolution Light Microscopy.”. PLoS Biol 7 (6): e1000137.
    Reference Link
  • Coulter, D E, and E Wieschaus. (1988) 1988. “Gene Activities and Segmental Patterning in Drosophila: Analysis of Odd-Skipped and Pair-Rule Double Mutants.”. Genes Dev 2 (12B): 1812-23.
    Reference Link
  • Peterson, Celeste N, Igor Levchenko, Joshua D Rabinowitz, Tania A Baker, and Thomas J Silhavy. (2012) 2012. “RpoS Proteolysis Is Controlled Directly by ATP Levels in Escherichia Coli.”. Genes Dev 26 (6): 548-53.
    Reference Link
  • Banigan, Edward J, Michael A Gelbart, Zemer Gitai, Ned S Wingreen, and Andrea J Liu. (2011) 2011. “Filament Depolymerization Can Explain Chromosome Pulling During Bacterial Mitosis.”. PLoS Comput Biol 7 (9): e1002145.
    Reference Link

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