Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Whole-Mount in Situ Hybridization on Sea Squirt (Ciona Intestinalis) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5348.

Novoradovskaya, Natalia, Michael L Whitfield, Lee S Basehore, Alexey Novoradovsky, Robert Pesich, Jerry Usary, Mehmet Karaca, et al. (2004) 2004. “Universal Reference RNA As a Standard for Microarray Experiments.”. BMC Genomics 5 (1): 20.

Guan, Yuanfang, Dmitriy Gorenshteyn, Margit Burmeister, Aaron K Wong, John C Schimenti, Mary Ann Handel, Carol J Bult, Matthew A Hibbs, and Olga G Troyanskaya. 2012. “Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes.”. PLoS Comput Biol 8 (9): e1002694.

Jumbo-Lucioni, Patricia, Julien Ayroles, Michelle Chambers, Katherine W Jordan, Jeff Leips, Trudy Fc Mackay, and Maria De Luca. 2010. “Systems Genetics Analysis of Body Weight and Energy Metabolism Traits in Drosophila Melanogaster.”. BMC Genomics 11: 297.

Thomas, Jeffrey H, and Eric Wieschaus. (2004) 2004. “src64 and tec29 Are Required for Microfilament Contraction During Drosophila Cellularization.”. Development 131 (4): 863-71.

Bejsovec, A, and E Wieschaus. (1995) 1995. “Signaling Activities of the Drosophila Wingless Gene Are Separately Mutable and Appear to Be Transduced at the Cell Surface.”. Genetics 139 (1): 309-20.

Tkačik, Gašper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek, and Michael J Berry. (2014) 2014. “Searching for Collective Behavior in a Large Network of Sensory Neurons.”. PLoS Comput Biol 10 (1): e1003408.

Levine, Michael. (2014) 2014. “Retrospective. Walter Gehring (1939-2014).”. Science 345 (6194): 277.

Fan, Jing, Jiangbin Ye, Jurre J Kamphorst, Tomer Shlomi, Craig B Thompson, and Joshua D Rabinowitz. (2014) 2014. “Quantitative Flux Analysis Reveals Folate-Dependent NADPH Production.”. Nature 510 (7504): 298-302.

Block, Steven M, Charles L Asbury, Joshua W Shaevitz, and Matthew J Lang. (2003) 2003. “Probing the Kinesin Reaction Cycle With a 2D Optical Force Clamp.”. Proc Natl Acad Sci U S A 100 (5): 2351-6.

Greene, Casey S, and Olga G Troyanskaya. (2011) 2011. “PILGRM: An Interactive Data-Driven Discovery Platform for Expert Biologists.”. Nucleic Acids Res 39 (Web Server issue).

Tilghman, S M, M S Bartolomei, A L Webber, M E Brunkow, J Saam, P A Leighton, K Pfeifer, and S Zemel. 1993. “Parental Imprinting of the H19 and Igf2 Genes in the Mouse.”. Cold Spring Harb Symp Quant Biol 58: 287-95.

Tolwinski, Nicholas S, and Eric Wieschaus. (2004) 2004. “A Nuclear Escort for Beta-Catenin.”. Nat Cell Biol 6 (7): 579-80.

Perry, Michael W, Alistair N Boettiger, and Michael Levine. (2011) 2011. “Multiple Enhancers Ensure Precision of Gap Gene-Expression Patterns in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 108 (33): 13570-5.

Chung, Kwanghun, Yoosik Kim, Jitendra S Kanodia, Emily Gong, Stanislav Y Shvartsman, and Hang Lu. (2011) 2011. “A Microfluidic Array for Large-Scale Ordering and Orientation of Embryos.”. Nat Methods 8 (2): 171-6.

Webber, A L, R S Ingram, J M Levorse, and S M Tilghman. (1998) 1998. “Location of Enhancers Is Essential for the Imprinting of H19 and Igf2 Genes.”. Nature 391 (6668): 711-5.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Isolation of Individual Cells and Tissues from Electroporated Sea Squirt (Ciona) Embryos by Fluorescence-Activated Cell Sorting (FACS).”. Cold Spring Harb Protoc 2009 (12): pdb.prot5349.

Senger, Kate, Grant W Armstrong, William J Rowell, Jennifer M Kwan, Michele Markstein, and Michael Levine. (2004) 2004. “Immunity Regulatory DNAs Share Common Organizational Features in Drosophila.”. Mol Cell 13 (1): 19-32.

Troyanskaya, Olga. (2007) 2007. “‘Getting Started in. ’: A Series Not to Miss.”. PLoS Comput Biol 3 (10): 1841.

Mackay, Trudy F C, Eric A Stone, and Julien Ayroles. (2009) 2009. “The Genetics of Quantitative Traits: Challenges and Prospects.”. Nat Rev Genet 10 (8): 565-77.

Schejter, E D, and E Wieschaus. 1993. “Functional Elements of the Cytoskeleton in the Early Drosophila Embryo.”. Annu Rev Cell Biol 9: 67-99.

Rauskolb, C, M Peifer, and E Wieschaus. (1993) 1993. “Extradenticle, a Regulator of Homeotic Gene Activity, Is a Homolog of the Homeobox-Containing Human Proto-Oncogene pbx1.”. Cell 74 (6): 1101-12.

Houchmandzadeh, Bahram, Eric Wieschaus, and Stanislas Leibler. (2002) 2002. “Establishment of Developmental Precision and Proportions in the Early Drosophila Embryo.”. Nature 415 (6873): 798-802.

Simakov, David S A, Lily S Cheung, Len M Pismen, and Stanislav Y Shvartsman. (2012) 2012. “EGFR-Dependent Network Interactions That Pattern Drosophila Eggshell Appendages.”. Development 139 (15): 2814-20.

Parks, S, and E Wieschaus. (1991) 1991. “The Drosophila Gastrulation Gene Concertina Encodes a G Alpha-Like Protein.”. Cell 64 (2): 447-58.

Leighton, P A, R S Ingram, J Eggenschwiler, A Efstratiadis, and S M Tilghman. (1995) 1995. “Disruption of Imprinting Caused by Deletion of the H19 Gene Region in Mice.”. Nature 375 (6526): 34-9.

Pane, Attilio, Peng Jiang, Dorothy Yanling Zhao, Mona Singh, and Trudi Schüpbach. (2011) 2011. “The Cutoff Protein Regulates PiRNA Cluster Expression and PiRNA Production in the Drosophila Germline.”. EMBO J 30 (22): 4601-15.

Levine, Michael. (2014) 2014. “The Contraction of Time and Space in Remote Chromosomal Interactions.”. Cell 158 (2): 243-4.

McCarroll, Steven A, Coleen T Murphy, Sige Zou, Scott D Pletcher, Chen-Shan Chin, Yuh Nung Jan, Cynthia Kenyon, Cornelia I Bargmann, and Hao Li. (2004) 2004. “Comparing Genomic Expression Patterns across Species Identifies Shared Transcriptional Profile in Aging.”. Nat Genet 36 (2): 197-204.

Jiménez, Gerardo, Stanislav Y Shvartsman, and Ze’ev Paroush. (2012) 2012. “The Capicua Repressor--a General Sensor of RTK Signaling in Development and Disease.”. J Cell Sci 125 (Pt 6): 1383-91.

Klein, Daryl E, Valerie M Nappi, Gregory T Reeves, Stanislav Y Shvartsman, and Mark A Lemmon. (2004) 2004. “Argos Inhibits Epidermal Growth Factor Receptor Signalling by Ligand Sequestration.”. Nature 430 (7003): 1040-4.

Bennett, Bryson D, Jie Yuan, Elizabeth H Kimball, and Joshua D Rabinowitz. 2008. “Absolute Quantitation of Intracellular Metabolite Concentrations by an Isotope Ratio-Based Approach.”. Nat Protoc 3 (8): 1299-311.

Ewald, Collin Y, Jess N Landis, Jess Porter Abate, Coleen T Murphy, and Keith Blackwell. (2015) 2015. “Dauer-Independent Insulin IGF-1-Signalling Implicates Collagen Remodelling in Longevity.”. Nature 519 (7541): 97-101. doi:10.1038/nature14021.

Klibaite, Ugne, Gordon J Berman, Jessica Doran Cande, David L Stern, and Joshua W Shaevitz. (2017) 2017. “An Unsupervised Method for Quantifying the Behavior of Paired Animals.”. Phys Biol 14 (1): 015006. doi:10.1088/1478-3975/aa5c50.

Cao, Chen, Laurence A Lemaire, Wei Wang, Peter H Yoon, Yoolim A Choi, Lance R Parsons, John C Matese, Wei Wang, Michael Levine, and Kai Chen. (2019) 2019. “Comprehensive Single-Cell Transcriptome Lineages of a Proto-Vertebrate.”. Nature 571 (7765): 349-54. doi:10.1038/s41586-019-1385-y.

Stathopoulos, Angelike, and Michael Levine. (2002) 2002. “Whole-Genome Expression Profiles Identify Gene Batteries in Drosophila.”. Dev Cell 3 (4): 464-5.

Zartman, Jeremiah J, and Stanislav Y Shvartsman. 2010. “Unit Operations of Tissue Development: Epithelial Folding.”. Annu Rev Chem Biomol Eng 1: 231-46.

Murphy, Coleen T, Seung-Jae Lee, and Cynthia Kenyon. (2007) 2007. “Tissue Entrainment by Feedback Regulation of Insulin Gene Expression in the Endoderm of Caenorhabditis Elegans.”. Proc Natl Acad Sci U S A 104 (48): 19046-50.

McIsaac, Scott, Benjamin L Oakes, Xin Wang, Krysta A Dummit, David Botstein, and Marcus B Noyes. (2013) 2013. “Synthetic Gene Expression Perturbation Systems With Rapid, Tunable, Single-Gene Specificity in Yeast.”. Nucleic Acids Res 41 (4): e57.

Christiaen, Lionel, Alberto Stolfi, Brad Davidson, and Michael Levine. (2009) 2009. “Spatio-Temporal Intersection of Lhx3 and Tbx6 Defines the Cardiac Field through Synergistic Activation of Mesp.”. Dev Biol 328 (2): 552-60.

Di Talia, Stefano, and Eric F Wieschaus. (2012) 2012. “Short-Term Integration of Cdc25 Dynamics Controls Mitotic Entry During Drosophila Gastrulation.”. Dev Cell 22 (4): 763-74.

Murphy, Coleen T. (2006) 2006. “The Search for DAF-16 FOXO Transcriptional Targets: Approaches and Discoveries.”. Exp Gerontol 41 (10): 910-21.

Tolwinski, Nicholas S, and Eric Wieschaus. (2004) 2004. “Rethinking WNT Signaling.”. Trends Genet 20 (4): 177-81.

Goentoro, Lea A, Nir Yakoby, Joseph Goodhouse, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantitative Analysis of the GAL4 UAS System in Drosophila Oogenesis.”. Genesis 44 (2): 66-74.

Schupbach, T, and E Wieschaus. 1998. “Probing for Gene Specificity in Epithelial Development.”. Int J Dev Biol 42 (3): 249-55.

Pavan, W J, and S M Tilghman. (1994) 1994. “Piebald Lethal (sl) Acts Early to Disrupt the Development of Neural Crest-Derived Melanocytes.”. Proc Natl Acad Sci U S A 91 (15): 7159-63.

Tilghman, S M. 1991. “Parental Imprinting in the Mouse.”. Harvey Lect 87: 69-84.

Armand, P, A C Knapp, A J Hirsch, E F Wieschaus, and M D Cole. (1994) 1994. “A Novel Basic Helix-Loop-Helix Protein Is Expressed in Muscle Attachment Sites of the Drosophila Epidermis.”. Mol Cell Biol 14 (6): 4145-54.

Haddrill, Penelope R, Kevin R Thornton, Brian Charlesworth, and Peter Andolfatto. (2005) 2005. “Multilocus Patterns of Nucleotide Variability and the Demographic and Selection History of Drosophila Melanogaster Populations.”. Genome Res 15 (6): 790-9.

Zhen, Ying, and Peter Andolfatto. 2012. “Methods to Detect Selection on Noncoding DNA.”. Methods Mol Biol 856: 141-59.