Huttenhower, Curtis, Erin M Haley, Matthew A Hibbs, Vanessa Dumeaux, Daniel R Barrett, Hilary A Coller, and Olga G Troyanskaya. (2009) 2009. “Exploring the Human Genome With Functional Maps.”. Genome Res 19 (6): 1093-106.

Brooks, Dawn J, Jacques R Fresco, Arthur M Lesk, and Mona Singh. (2002) 2002. “Evolution of Amino Acid Frequencies in Proteins over Deep Time: Inferred Order of Introduction of Amino Acids into the Genetic Code.”. Mol Biol Evol 19 (10): 1645-55.

Miller, Jonathan, Chen Zeng, Ned S Wingreen, and Chao Tang. (2002) 2002. “Emergence of Highly Designable Protein-Backbone Conformations in an off-Lattice Model.”. Proteins 47 (4): 506-12.

Ndifon, Wilfred, Ned S Wingreen, and Simon A Levin. (2009) 2009. “Differential Neutralization Efficiency of Hemagglutinin Epitopes, Antibody Interference, and the Design of Influenza Vaccines.”. Proc Natl Acad Sci U S A 106 (21): 8701-6.

Li, Hao, Chao Tang, and Ned S Wingreen. (2002) 2002. “Designability of Protein Structures: A Lattice-Model Study Using the Miyazawa-Jernigan Matrix.”. Proteins 49 (3): 403-12.

Reaves, Marshall Louis, and Joshua D Rabinowitz. (2011) 2011. “Characteristic Phenotypes Associated With PtsN-Null Mutants in Escherichia Coli K-12 Are Absent in Strains With Functional IlvG.”. J Bacteriol 193 (18): 4576-81.

Hess, David C, Wenyun Lu, Joshua D Rabinowitz, and David Botstein. (2006) 2006. “Ammonium Toxicity and Potassium Limitation in Yeast.”. PLoS Biol 4 (11): e351.

Rabinowitz, Joshua D, and Elizabeth Kimball. (2007) 2007. “Acidic Acetonitrile for Cellular Metabolome Extraction from Escherichia Coli.”. Anal Chem 79 (16): 6167-73.

Davidson, Shawn M, Oliver Jonas, Mark A Keibler, Han Wei Hou, Alba Luengo, Jared R Mayers, Jeffrey Wyckoff, et al. (2017) 2017. “Direct Evidence for Cancer-Cell-Autonomous Extracellular Protein Catabolism in Pancreatic Tumors.”. Nat Med 23 (2): 235-41. doi:10.1038/nm.4256.

Nofal, Michel, Kevin Zhang, Seunghun Han, and Joshua D Rabinowitz. (2017) 2017. “MTOR Inhibition Restores Amino Acid Balance in Cells Dependent on Catabolism of Extracellular Protein.”. Mol Cell 67 (6): 936-946.e5. doi:10.1016/j.molcel.2017.08.011.

Bajad, Sunil U, Wenyun Lu, Elizabeth H Kimball, Jie Yuan, Celeste Peterson, and Joshua D Rabinowitz. (2006) 2006. “Separation and Quantitation of Water Soluble Cellular Metabolites by Hydrophilic Interaction Chromatography-Tandem Mass Spectrometry.”. J Chromatogr A 1125 (1): 76-88.

Capra, John A, and Mona Singh. (2007) 2007. “Predicting Functionally Important Residues from Sequence Conservation.”. Bioinformatics 23 (15): 1875-82.

Saldanha, Alok J, Matthew J Brauer, and David Botstein. (2004) 2004. “Nutritional Homeostasis in Batch and Steady-State Culture of Yeast.”. Mol Biol Cell 15 (9): 4089-104.

Vizcarra, Christina L, Naigong Zhang, Shannon A Marshall, Ned S Wingreen, Chen Zeng, and Stephen L Mayo. (2008) 2008. “An Improved Pairwise Decomposable Finite-Difference Poisson-Boltzmann Method for Computational Protein Design.”. J Comput Chem 29 (7): 1153-62.

Brauer, Matthew J, Alok J Saldanha, Kara Dolinski, and David Botstein. (2005) 2005. “Homeostatic Adjustment and Metabolic Remodeling in Glucose-Limited Yeast Cultures.”. Mol Biol Cell 16 (5): 2503-17.