Identifying proteins of high designability via surface-exposure patterns. Author Eldon Emberly, Jonathan Miller, Chen Zeng, Ned Wingreen, Chao Tang Publication Year 2002 Type Journal Article Abstract Using an off-lattice model, we fully enumerate folded conformations of polypeptide chains of up to N = 19 monomers. Structures are found to differ markedly in designability, defined as the number of sequences with that structure as a unique lowest-energy conformation. We find that designability is closely correlated with the pattern of surface exposure of the folded structure. For longer chains, complete enumeration of structures is impractical. Instead, structures can be randomly sampled, and relative designability estimated either from designability within the random sample, or directly from surface-exposure pattern. We compare the surface-exposure patterns of those structures identified as highly designable to the patterns of naturally occurring proteins. Keywords Proteins, Models, Molecular, Protein Conformation, Protein Folding, Peptides, Hydrophobic and Hydrophilic Interactions Journal Proteins Volume 47 Issue 3 Pages 295-304 Date Published 05/2002 Alternate Journal Proteins Google ScholarBibTeXEndNote X3 XML