Bajad, Sunil U, Wenyun Lu, Elizabeth H Kimball, Jie Yuan, Celeste Peterson, and Joshua D Rabinowitz. (2006) 2006. “Separation and Quantitation of Water Soluble Cellular Metabolites by Hydrophilic Interaction Chromatography-Tandem Mass Spectrometry.”. J Chromatogr A 1125 (1): 76-88.

Caudy, Amy A, Yuanfang Guan, Yue Jia, Christina Hansen, Chris DeSevo, Alicia P Hayes, Joy Agee, et al. (2013) 2013. “A New System for Comparative Functional Genomics of Saccharomyces Yeasts.”. Genetics 195 (1): 275-87.

Yuan, Jie, Christopher D Doucette, William U Fowler, Xiao-Jiang Feng, Matthew Piazza, Herschel A Rabitz, Ned S Wingreen, and Joshua D Rabinowitz. 2009. “Metabolomics-Driven Quantitative Analysis of Ammonia Assimilation in E. Coli.”. Mol Syst Biol 5: 302.

Yuan, Jie, William U Fowler, Elizabeth Kimball, Wenyun Lu, and Joshua D Rabinowitz. (2006) 2006. “Kinetic Flux Profiling of Nitrogen Assimilation in Escherichia Coli.”. Nat Chem Biol 2 (10): 529-30.

Yuan, Jie, Bryson D Bennett, and Joshua D Rabinowitz. 2008. “Kinetic Flux Profiling for Quantitation of Cellular Metabolic Fluxes.”. Nat Protoc 3 (8): 1328-40.

Yuan, Jie, and Joshua D Rabinowitz. (2007) 2007. “Differentiating Metabolites Formed from De Novo Synthesis Versus Macromolecule Decomposition.”. J Am Chem Soc 129 (30): 9294-5.

Brauer, Matthew J, Jie Yuan, Bryson D Bennett, Wenyun Lu, Elizabeth Kimball, David Botstein, and Joshua D Rabinowitz. (2006) 2006. “Conservation of the Metabolomic Response to Starvation across Two Divergent Microbes.”. Proc Natl Acad Sci U S A 103 (51): 19302-7.

Goyal, Sidhartha, Jie Yuan, Thomas Chen, Joshua D Rabinowitz, and Ned S Wingreen. (2010) 2010. “Achieving Optimal Growth through Product Feedback Inhibition in Metabolism.”. PLoS Comput Biol 6 (6): e1000802.

Bennett, Bryson D, Jie Yuan, Elizabeth H Kimball, and Joshua D Rabinowitz. 2008. “Absolute Quantitation of Intracellular Metabolite Concentrations by an Isotope Ratio-Based Approach.”. Nat Protoc 3 (8): 1299-311.