Chikina, Maria D, Christophe P Gerald, Xianting Li, Yongchao Ge, Hanna Pincas, Venugopalan D Nair, Aaron K Wong, et al. (2015) 2015. “Low-Variance RNAs Identify Parkinson’s Disease Molecular Signature in Blood.”. Mov Disord 30 (6): 813-21.

Wong, Aaron K, Christopher Y Park, Casey S Greene, Lars A Bongo, Yuanfang Guan, and Olga G Troyanskaya. (2012) 2012. “IMP: A Multi-Species Functional Genomics Portal for Integration, Visualization and Prediction of Protein Functions and Networks.”. Nucleic Acids Res 40 (Web Server issue).

Wong, Aaron K, Arjun Krishnan, Victoria Yao, Alicja Tadych, and Olga G Troyanskaya. (2015) 2015. “IMP 2.0: A Multi-Species Functional Genomics Portal for Integration, Visualization and Prediction of Protein Functions and Networks.”. Nucleic Acids Res.

Park, Christopher Y, Aaron K Wong, Casey S Greene, Jessica Rowland, Yuanfang Guan, Lars A Bongo, Rebecca Burdine, and Olga G Troyanskaya. 2013. “Functional Knowledge Transfer for High-Accuracy Prediction of under-Studied Biological Processes.”. PLoS Comput Biol 9 (3): e1002957.

Goya, Jonathan, Aaron K Wong, Victoria Yao, Arjun Krishnan, Max Homilius, and Olga G Troyanskaya. (2015) 2015. “FNTM: A Server for Predicting Functional Networks of Tissues in Mouse.”. Nucleic Acids Res.

Gorenshteyn, Dmitriy, Elena Zaslavsky, Miguel Fribourg, Christopher Y Park, Aaron K Wong, Alicja Tadych, Boris M Hartmann, et al. (2015) 2015. “Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases.”. Immunity 43 (3): 605-14.

Roberts, Andrew M, Aaron K Wong, Ian Fisk, and Olga G Troyanskaya. (2016) 2016. “GIANT API: An Application Programming Interface for Functional Genomics.”. Nucleic Acids Res.

Krishnan, Arjun, Ran Zhang, Victoria Yao, Chandra L Theesfeld, Aaron K Wong, Alicja Tadych, Natalia Volfovsky, Alan Packer, Alex Lash, and Olga G Troyanskaya. (2016) 2016. “Genome-Wide Prediction and Functional Characterization of the Genetic Basis of Autism Spectrum Disorder.”. Nat Neurosci 19 (11): 1454-62. doi:10.1038/nn.4353.

Zhou, Jian, Chandra L Theesfeld, Kevin Yao, Kathleen M Chen, Aaron K Wong, and Olga G Troyanskaya. (2018) 2018. “Deep Learning Sequence-Based Ab Initio Prediction of Variant Effects on Expression and Disease Risk.”. Nat Genet 50 (8): 1171-79. doi:10.1038/s41588-018-0160-6.

Yao, Victoria, Aaron K Wong, and Olga G Troyanskaya. (2018) 2018. “Enabling Precision Medicine through Integrative Network Models.”. J Mol Biol 430 (18 Pt A): 2913-23. doi:10.1016/j.jmb.2018.07.004.

Yao, Victoria, Rachel Kaletsky, William Keyes, Danielle E Mor, Aaron K Wong, Salman Sohrabi, Coleen T Murphy, and Olga G Troyanskaya. (2018) 2018. “An Integrative Tissue-Network Approach to Identify and Test Human Disease Genes.”. Nat Biotechnol. doi:10.1038/nbt.4246.

Lee, Young-suk, Aaron K Wong, Alicja Tadych, Boris M Hartmann, Christopher Y Park, Veronica A DeJesus, Irene Ramos, Elena Zaslavsky, Stuart C Sealfon, and Olga G Troyanskaya. (2018) 2018. “Interpretation of an Individual Functional Genomics Experiment Guided by Massive Public Data.”. Nat Methods 15 (12): 1049-52. doi:10.1038/s41592-018-0218-5.

Greene, Casey S, Arjun Krishnan, Aaron K Wong, Emanuela Ricciotti, Rene A Zelaya, Daniel S Himmelstein, Ran Zhang, et al. (2015) 2015. “Understanding Multicellular Function and Disease With Human Tissue-Specific Networks.”. Nat Genet 47 (6): 569-76.

Zhou, Jian, Christopher Y Park, Chandra L Theesfeld, Aaron K Wong, Yuan Yuan, Claudia Scheckel, John J Fak, et al. (2019) 2019. “Whole-Genome Deep-Learning Analysis Identifies Contribution of Noncoding Mutations to Autism Risk.”. Nat Genet 51 (6): 973-80. doi:10.1038/s41588-019-0420-0.

Guan, Yuanfang, Dmitriy Gorenshteyn, Margit Burmeister, Aaron K Wong, John C Schimenti, Mary Ann Handel, Carol J Bult, Matthew A Hibbs, and Olga G Troyanskaya. 2012. “Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes.”. PLoS Comput Biol 8 (9): e1002694.

Park, Christopher Y, Arjun Krishnan, Qian Zhu, Aaron K Wong, Young-suk Lee, and Olga G Troyanskaya. (2014) 2014. “Tissue-Aware Data Integration Approach for the Inference of Pathway Interactions in Metazoan Organisms.”. Bioinformatics.

Zhu, Qian, Aaron K Wong, Arjun Krishnan, Miriam R Aure, Alicja Tadych, Ran Zhang, David C Corney, et al. (2015) 2015. “Targeted Exploration and Analysis of Large Cross-Platform Human Transcriptomic Compendia.”. Nat Methods 12 (3): 211-4, 3 p following 214.