Huang, Wen, Stephen Richards, Mary Anna Carbone, Dianhui Zhu, Robert Anholt, Julien Ayroles, Laura Duncan, et al. (2012) 2012. “Epistasis Dominates the Genetic Architecture of Drosophila Quantitative Traits.”. Proc Natl Acad Sci U S A 109 (39): 15553-9.

Mackay, Trudy F C, Stephen Richards, Eric A Stone, Antonio Barbadilla, Julien Ayroles, Dianhui Zhu, Sònia Casillas, et al. (2012) 2012. “The Drosophila Melanogaster Genetic Reference Panel.”. Nature 482 (7384): 173-8.

Harbison, Susan T, Mary Anna Carbone, Julien Ayroles, Eric A Stone, Richard F Lyman, and Trudy F C Mackay. (2009) 2009. “Co-Regulated Transcriptional Networks Contribute to Natural Genetic Variation in Drosophila Sleep.”. Nat Genet 41 (3): 371-5.

Morozova, Tatiana, V, Julien Ayroles, Katherine W Jordan, Laura Duncan, Mary Anna Carbone, Richard F Lyman, Eric A Stone, et al. (2009) 2009. “Alcohol Sensitivity in Drosophila: Translational Potential of Systems Genetics.”. Genetics 183 (2): 733-45, 1SI.

Ober, Ulrike, Julien Ayroles, Eric A Stone, Stephen Richards, Dianhui Zhu, Richard A Gibbs, Christian Stricker, et al. 2012. “Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila Melanogaster.”. PLoS Genet 8 (5): e1002685.

Edwards, Alexis C, Julien Ayroles, Eric A Stone, Mary Anna Carbone, Richard F Lyman, and Trudy F C Mackay. 2009. “A Transcriptional Network Associated With Natural Variation in Drosophila Aggressive Behavior.”. Genome Biol 10 (7): R76.

Ayroles, Julien, Mary Anna Carbone, Eric A Stone, Katherine W Jordan, Richard F Lyman, Michael M Magwire, Stephanie M Rollmann, et al. (2009) 2009. “Systems Genetics of Complex Traits in Drosophila Melanogaster.”. Nat Genet 41 (3): 299-307.

Stone, Eric A, and Julien Ayroles. (2009) 2009. “Modulated Modularity Clustering As an Exploratory Tool for Functional Genomic Inference.”. PLoS Genet 5 (5): e1000479.

Kocher, Sarah D, Julien Ayroles, Eric A Stone, and Christina M Grozinger. 2010. “Individual Variation in Pheromone Response Correlates With Reproductive Traits and Brain Gene Expression in Worker Honey Bees.”. PLoS One 5 (2): e9116.

Massouras, Andreas, Sebastian M Waszak, Monica Albarca-Aguilera, Korneel Hens, Wiebke Holcombe, Julien Ayroles, Emmanouil T Dermitzakis, et al. 2012. “Genomic Variation and Its Impact on Gene Expression in Drosophila Melanogaster.”. PLoS Genet 8 (11): e1003055.

Mackay, Trudy F C, Eric A Stone, and Julien Ayroles. (2009) 2009. “The Genetics of Quantitative Traits: Challenges and Prospects.”. Nat Rev Genet 10 (8): 565-77.

Ayroles, Julien, Brooke A Laflamme, Eric A Stone, Mariana F Wolfner, and Trudy F C Mackay. (2011) 2011. “Functional Genome Annotation of Drosophila Seminal Fluid Proteins Using Transcriptional Genetic Networks.”. Genet Res (Camb) 93 (6): 387-95.