Zartman, Jeremiah J, and Stanislav Y Shvartsman. 2010. “Unit Operations of Tissue Development: Epithelial Folding.”. Annu Rev Chem Biomol Eng 1: 231-46. Reference Link
Nikolić, Djordje L, Alistair N Boettiger, Dafna Bar-Sagi, Jeffrey D Carbeck, and Stanislav Y Shvartsman. (2006) 2006. “Role of Boundary Conditions in an Experimental Model of Epithelial Wound Healing.”. Am J Physiol Cell Physiol 291 (1). Reference Link
Kim, Yoosik, Mathieu Coppey, Rona Grossman, Leiore Ajuria, Gerardo Jiménez, Ze’ev Paroush, and Stanislav Y Shvartsman. (2010) 2010. “MAPK Substrate Competition Integrates Patterning Signals in the Drosophila Embryo.”. Curr Biol 20 (5): 446-51. Reference Link
Futran, Alan S, James Link, Rony Seger, and Stanislav Y Shvartsman. (2013) 2013. “ERK As a Model for Systems Biology of Enzyme Kinetics in Cells.”. Curr Biol 23 (21). Reference Link
Zartman, Jeremiah J, Nir Yakoby, Christopher A Bristow, Xiaofeng Zhou, Karin Schlichting, Christian Dahmann, and Stanislav Y Shvartsman. (2008) 2008. “Cad74A Is Regulated by BR and Is Required for Robust Dorsal Appendage Formation in Drosophila Oogenesis.”. Dev Biol 322 (2): 289-301. Reference Link
Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Transitions in the Model of Epithelial Patterning.”. Dev Dyn 226 (1): 155-9. Reference Link
Reeves, Gregory T, Cyrill B Muratov, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantitative Models of Developmental Pattern Formation.”. Dev Cell 11 (3): 289-300. Reference Link
Shvartsman, Stanislav Y, Mathieu Coppey, and Alexander M Berezhkovskii. (2009) 2009. “MAPK Signaling in Equations and Embryos.”. Fly (Austin) 3 (1): 62-7. Reference Link
Zartman, Jeremiah J, and Stanislav Y Shvartsman. (2007) 2007. “Enhancer Organization: Transistor With a Twist or Something in a Different Vein?”. Curr Biol 17 (24). Reference Link
Berezhkovskii, Alexander M, Yurii A Makhnovskii, Michael I Monine, Vladimir Yu Zitserman, and Stanislav Y Shvartsman. (2004) 2004. “Boundary Homogenization for Trapping by Patchy Surfaces.”. J Chem Phys 121 (22): 11390-4. Reference Link
Fuchs, Alisa, Lily S Cheung, Enrica Charbonnier, Stanislav Y Shvartsman, and George Pyrowolakis. (2012) 2012. “Transcriptional Interpretation of the EGF Receptor Signaling Gradient.”. Proc Natl Acad Sci U S A 109 (5): 1572-7. Reference Link
Goentoro, Lea A, Nir Yakoby, Joseph Goodhouse, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantitative Analysis of the GAL4 UAS System in Drosophila Oogenesis.”. Genesis 44 (2): 66-74. Reference Link
Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Long-Range Signal Transmission in Autocrine Relays.”. Biophys J 84 (2 Pt 1): 883-96. Reference Link
Simakov, David S A, Lily S Cheung, Len M Pismen, and Stanislav Y Shvartsman. (2012) 2012. “EGFR-Dependent Network Interactions That Pattern Drosophila Eggshell Appendages.”. Development 139 (15): 2814-20. Reference Link
Yan, Shian-Jang, Jeremiah J Zartman, Minjie Zhang, Anthony Scott, Stanislav Y Shvartsman, and Willis X Li. 2009. “Bistability Coordinates Activation of the EGFR and DPP Pathways in Drosophila Vein Differentiation.”. Mol Syst Biol 5: 278. Reference Link
Grimm, Oliver, Victoria Sanchez Zini, Yoosik Kim, Jordi Casanova, Stanislav Y Shvartsman, and Eric Wieschaus. (2012) 2012. “Torso RTK Controls Capicua Degradation by Changing Its Subcellular Localization.”. Development 139 (21): 3962-8. Reference Link
Goentoro, Lea A, Gregory T Reeves, Craig P Kowal, Luigi Martinelli, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantifying the Gurken Morphogen Gradient in Drosophila Oogenesis.”. Dev Cell 11 (2): 263-72. Reference Link
Gordon, Peter, V, Christine Sample, Alexander M Berezhkovskii, Cyrill B Muratov, and Stanislav Y Shvartsman. (2011) 2011. “Local Kinetics of Morphogen Gradients.”. Proc Natl Acad Sci U S A 108 (15): 6157-62. Reference Link
Kanodia, Jitendra S, Richa Rikhy, Yoosik Kim, Viktor K Lund, Robert DeLotto, Jennifer Lippincott-Schwartz, and Stanislav Y Shvartsman. (2009) 2009. “Dynamics of the Dorsal Morphogen Gradient.”. Proc Natl Acad Sci U S A 106 (51): 21707-12. Reference Link
Qiao, Liang, Robert B Nachbar, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2007) 2007. “Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling.”. PLoS Comput Biol 3 (9): 1819-26. Reference Link
Coppey, Mathieu, Alexander M Berezhkovskii, Stuart C Sealfon, and Stanislav Y Shvartsman. (2007) 2007. “Time and Length Scales of Autocrine Signals in Three Dimensions.”. Biophys J 93 (6): 1917-22. Reference Link
Berezhkovskii, Alexander M, and Stanislav Y Shvartsman. (2011) 2011. “Physical Interpretation of Mean Local Accumulation Time of Morphogen Gradient Formation.”. J Chem Phys 135 (15): 154115. Reference Link
Gordon, Peter, V, Cyrill B Muratov, and Stanislav Y Shvartsman. (2013) 2013. “Local Accumulation Times for Source, Diffusion, and Degradation Models in Two and Three Dimensions.”. J Chem Phys 138 (10): 104121. Reference Link
Shvartsman, Stanislav Y, Mathieu Coppey, and Alexander M Berezhkovskii. (2008) 2008. “Dynamics of Maternal Morphogen Gradients in Drosophila.”. Curr Opin Genet Dev 18 (4): 342-7. Reference Link
Klein, Daryl E, Valerie M Nappi, Gregory T Reeves, Stanislav Y Shvartsman, and Mark A Lemmon. (2004) 2004. “Argos Inhibits Epidermal Growth Factor Receptor Signalling by Ligand Sequestration.”. Nature 430 (7003): 1040-4. Reference Link
Osterfield, Miriam, XinXin Du, Trudi Schüpbach, Eric Wieschaus, and Stanislav Y Shvartsman. (2013) 2013. “Three-Dimensional Epithelial Morphogenesis in the Developing Drosophila Egg.”. Dev Cell 24 (4): 400-10. Reference Link
Cheung, Lily S, Trudi Schüpbach, and Stanislav Y Shvartsman. (2011) 2011. “Pattern Formation by Receptor Tyrosine Kinases: Analysis of the Gurken Gradient in Drosophila Oogenesis.”. Curr Opin Genet Dev 21 (6): 719-25. Reference Link
Berezhkovskii, Alexander M, Lazaros Batsilas, and Stanislav Y Shvartsman. (2004) 2004. “Ligand Trapping in Epithelial Layers and Cell Cultures.”. Biophys Chem 107 (3): 221-7. Reference Link
Cheung, Lily S, David S A Simakov, Alisa Fuchs, George Pyrowolakis, and Stanislav Y Shvartsman. (2013) 2013. “Dynamic Model for the Coordination of Two Enhancers of Broad by EGFR Signaling.”. Proc Natl Acad Sci U S A 110 (44): 17939-44. Reference Link
Rogers, William A, Yogesh Goyal, Kei Yamaya, Stanislav Y Shvartsman, and Michael S Levine. (2017) 2017. “Uncoupling Neurogenic Gene Networks in the Drosophila Embryo.”. Genes Dev 31 (7): 634-38. doi:10.1101/gad.297150.117. Reference Link
Rushlow, Christine A, and Stanislav Y Shvartsman. (2012) 2012. “Temporal Dynamics, Spatial Range, and Transcriptional Interpretation of the Dorsal Morphogen Gradient.”. Curr Opin Genet Dev 22 (6): 542-6. Reference Link
Kanodia, Jitendra S, Hsiao-Lan Liang, Yoosik Kim, Bomyi Lim, Mei Zhan, Hang Lu, Christine A Rushlow, and Stanislav Y Shvartsman. (2012) 2012. “Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo.”. Biophys J 102 (3): 427-33. Reference Link
Monine, Michael I, Alexander M Berezhkovskii, Elizabeth J Joslin, Steven Wiley, Douglas A Lauffenburger, and Stanislav Y Shvartsman. (2005) 2005. “Ligand Accumulation in Autocrine Cell Cultures.”. Biophys J 88 (4): 2384-90. Reference Link
Yakoby, Nir, Jessica Lembong, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “Drosophila Eggshell Is Patterned by Sequential Action of Feedforward and Feedback Loops.”. Development 135 (2): 343-51. Reference Link
Song, Yonghyun, Robert A Marmion, Junyoung O Park, Debopriyo Biswas, Joshua D Rabinowitz, and Stanislav Y Shvartsman. (2017) 2017. “Dynamic Control of DNTP Synthesis in Early Embryos.”. Dev Cell 42 (3): 301-308.e3. doi:10.1016/j.devcel.2017.06.013. Reference Link
Kim, Yoosik, Ze’ev Paroush, Knud Nairz, Ernst Hafen, Gerardo Jiménez, and Stanislav Y Shvartsman. (2011) 2011. “Substrate-Dependent Control of MAPK Phosphorylation in Vivo.”. Mol Syst Biol 7: 467. Reference Link
Lembong, Jessica, Nir Yakoby, and Stanislav Y Shvartsman. (2009) 2009. “Pattern Formation by Dynamically Interacting Network Motifs.”. Proc Natl Acad Sci U S A 106 (9): 3213-8. Reference Link
Berezhkovskii, Alexander M, and Stanislav Y Shvartsman. (2013) 2013. “Kinetics of Receptor Occupancy During Morphogen Gradient Formation.”. J Chem Phys 138 (24): 244105. Reference Link
Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Discrete Models of Autocrine Cell Communication in Epithelial Layers.”. Biophys J 84 (6): 3624-35. Reference Link
Song, Yonghyun, Junyoung O Park, Lukas Tanner, Yatsuhisa Nagano, Joshua D Rabinowitz, and Stanislav Y Shvartsman. (2019) 2019. “Energy Budget of Drosophila Embryogenesis.”. Curr Biol 29 (12): R566-R567. doi:10.1016/j.cub.2019.05.025. Reference Link
Liu, Ping, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2011) 2011. “Substrate-Dependent Control of ERK Phosphorylation Can Lead to Oscillations.”. Biophys J 101 (11): 2572-81. Reference Link
Zartman, Jeremiah J, Lily S Cheung, Matthew G Niepielko, Christine Bonini, Benjamin Haley, Nir Yakoby, and Stanislav Y Shvartsman. (2011) 2011. “Pattern Formation by a Moving Morphogen Source.”. Phys Biol 8 (4): 045003. Reference Link
Lim, Bomyi, Núria Samper, Hang Lu, Christine Rushlow, Gerardo Jiménez, and Stanislav Y Shvartsman. (2013) 2013. “Kinetics of Gene Derepression by ERK Signaling.”. Proc Natl Acad Sci U S A 110 (25): 10330-5. Reference Link
Kim, Yoosik, Antonina Iagovitina, Keisuke Ishihara, Kate M Fitzgerald, Bart Deplancke, Dmitri Papatsenko, and Stanislav Y Shvartsman. (2013) 2013. “Context-Dependent Transcriptional Interpretation of Mitogen Activated Protein Kinase Signaling in the Drosophila Embryo.”. Chaos 23 (2): 025105. Reference Link
Batsilas, Lazaros, Alexander M Berezhkovskii, and Stanislav Y Shvartsman. (2003) 2003. “Stochastic Model of Autocrine and Paracrine Signals in Cell Culture Assays.”. Biophys J 85 (6): 3659-65. Reference Link
Coppey, Mathieu, Alistair N Boettiger, Alexander M Berezhkovskii, and Stanislav Y Shvartsman. (2008) 2008. “Nuclear Trapping Shapes the Terminal Gradient in the Drosophila Embryo.”. Curr Biol 18 (12): 915-9. Reference Link
Berezhkovskii, Alexander M, Christine Sample, and Stanislav Y Shvartsman. (2010) 2010. “How Long Does It Take to Establish a Morphogen Gradient?”. Biophys J 99 (8). Reference Link
Kanodia, Jitendra S, Yoosik Kim, Raju Tomer, Zia Khan, Kwanghun Chung, John D Storey, Hang Lu, Philipp J Keller, and Stanislav Y Shvartsman. (2011) 2011. “A Computational Statistics Approach for Estimating the Spatial Range of Morphogen Gradients.”. Development 138 (22): 4867-74. Reference Link
Lembong, Jessica, Nir Yakoby, and Stanislav Y Shvartsman. (2008) 2008. “Spatial Regulation of BMP Signaling by Patterned Receptor Expression.”. Tissue Eng Part A 14 (9): 1469-77. Reference Link
Sample, Christine, and Stanislav Y Shvartsman. (2010) 2010. “Multiscale Modeling of Diffusion in the Early Drosophila Embryo.”. Proc Natl Acad Sci U S A 107 (22): 10092-6. Reference Link