Foo, Sun Melody, Yujia Sun, Bomyi Lim, Ruta Ziukaite, Kevin O’Brien, Chung-Yi Nien, Nikolai Kirov, Stanislav Y Shvartsman, and Christine A Rushlow. (2014) 2014. “Zelda Potentiates Morphogen Activity by Increasing Chromatin Accessibility.”. Curr Biol 24 (12): 1341-6.

Muratov, Cyrill B, Peter Gordon V, and Stanislav Y Shvartsman. (2011) 2011. “Self-Similar Dynamics of Morphogen Gradients.”. Phys Rev E Stat Nonlin Soft Matter Phys 84 (4 Pt 1): 041916.

Chung, Kwanghun, Yoosik Kim, Jitendra S Kanodia, Emily Gong, Stanislav Y Shvartsman, and Hang Lu. (2011) 2011. “A Microfluidic Array for Large-Scale Ordering and Orientation of Embryos.”. Nat Methods 8 (2): 171-6.

Zartman, Jeremiah J, Jitendra S Kanodia, Lily S Cheung, and Stanislav Y Shvartsman. (2009) 2009. “Feedback Control of the EGFR Signaling Gradient: Superposition of Domain-Splitting Events in Drosophila Oogenesis.”. Development 136 (17): 2903-11.

Yakoby, Nir, Christopher A Bristow, Danielle Gong, Xenia Schafer, Jessica Lembong, Jeremiah J Zartman, Marc S Halfon, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “A Combinatorial Code for Pattern Formation in Drosophila Oogenesis.”. Dev Cell 15 (5): 725-37.

Fletcher, Alexander G, Miriam Osterfield, Ruth E Baker, and Stanislav Y Shvartsman. (2014) 2014. “Vertex Models of Epithelial Morphogenesis.”. Biophys J 106 (11): 2291-304.

Helman, Aharon, Bomyi Lim, María José Andreu, Yoosik Kim, Tatyana Shestkin, Hang Lu, Gerardo Jiménez, Stanislav Y Shvartsman, and Ze’ev Paroush. (2012) 2012. “RTK Signaling Modulates the Dorsal Gradient.”. Development 139 (16): 3032-9.

Shvartsman, Stanislav Y, and Ruth E Baker. (2012) 2012. “Mathematical Models of Morphogen Gradients and Their Effects on Gene Expression.”. Wiley Interdiscip Rev Dev Biol 1 (5): 715-30.

Zartman, Jeremiah J, Jitendra S Kanodia, Nir Yakoby, Xenia Schafer, Colin Watson, Karin Schlichting, Christian Dahmann, and Stanislav Y Shvartsman. (2009) 2009. “Expression Patterns of Cadherin Genes in Drosophila Oogenesis.”. Gene Expr Patterns 9 (1): 31-6.

Jiménez, Gerardo, Stanislav Y Shvartsman, and Ze’ev Paroush. (2012) 2012. “The Capicua Repressor--a General Sensor of RTK Signaling in Development and Disease.”. J Cell Sci 125 (Pt 6): 1383-91.

Zartman, Jeremiah J, and Stanislav Y Shvartsman. 2010. “Unit Operations of Tissue Development: Epithelial Folding.”. Annu Rev Chem Biomol Eng 1: 231-46.

Nikolić, Djordje L, Alistair N Boettiger, Dafna Bar-Sagi, Jeffrey D Carbeck, and Stanislav Y Shvartsman. (2006) 2006. “Role of Boundary Conditions in an Experimental Model of Epithelial Wound Healing.”. Am J Physiol Cell Physiol 291 (1).

Kim, Yoosik, Mathieu Coppey, Rona Grossman, Leiore Ajuria, Gerardo Jiménez, Ze’ev Paroush, and Stanislav Y Shvartsman. (2010) 2010. “MAPK Substrate Competition Integrates Patterning Signals in the Drosophila Embryo.”. Curr Biol 20 (5): 446-51.

Futran, Alan S, James Link, Rony Seger, and Stanislav Y Shvartsman. (2013) 2013. “ERK As a Model for Systems Biology of Enzyme Kinetics in Cells.”. Curr Biol 23 (21).

Zartman, Jeremiah J, Nir Yakoby, Christopher A Bristow, Xiaofeng Zhou, Karin Schlichting, Christian Dahmann, and Stanislav Y Shvartsman. (2008) 2008. “Cad74A Is Regulated by BR and Is Required for Robust Dorsal Appendage Formation in Drosophila Oogenesis.”. Dev Biol 322 (2): 289-301.

Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Transitions in the Model of Epithelial Patterning.”. Dev Dyn 226 (1): 155-9.

Reeves, Gregory T, Cyrill B Muratov, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantitative Models of Developmental Pattern Formation.”. Dev Cell 11 (3): 289-300.

Shvartsman, Stanislav Y, Mathieu Coppey, and Alexander M Berezhkovskii. (2009) 2009. “MAPK Signaling in Equations and Embryos.”. Fly (Austin) 3 (1): 62-7.

Zartman, Jeremiah J, and Stanislav Y Shvartsman. (2007) 2007. “Enhancer Organization: Transistor With a Twist or Something in a Different Vein?”. Curr Biol 17 (24).

Berezhkovskii, Alexander M, Yurii A Makhnovskii, Michael I Monine, Vladimir Yu Zitserman, and Stanislav Y Shvartsman. (2004) 2004. “Boundary Homogenization for Trapping by Patchy Surfaces.”. J Chem Phys 121 (22): 11390-4.

Fuchs, Alisa, Lily S Cheung, Enrica Charbonnier, Stanislav Y Shvartsman, and George Pyrowolakis. (2012) 2012. “Transcriptional Interpretation of the EGF Receptor Signaling Gradient.”. Proc Natl Acad Sci U S A 109 (5): 1572-7.

Goentoro, Lea A, Nir Yakoby, Joseph Goodhouse, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantitative Analysis of the GAL4 UAS System in Drosophila Oogenesis.”. Genesis 44 (2): 66-74.

Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Long-Range Signal Transmission in Autocrine Relays.”. Biophys J 84 (2 Pt 1): 883-96.

Simakov, David S A, Lily S Cheung, Len M Pismen, and Stanislav Y Shvartsman. (2012) 2012. “EGFR-Dependent Network Interactions That Pattern Drosophila Eggshell Appendages.”. Development 139 (15): 2814-20.

Yan, Shian-Jang, Jeremiah J Zartman, Minjie Zhang, Anthony Scott, Stanislav Y Shvartsman, and Willis X Li. 2009. “Bistability Coordinates Activation of the EGFR and DPP Pathways in Drosophila Vein Differentiation.”. Mol Syst Biol 5: 278.

Grimm, Oliver, Victoria Sanchez Zini, Yoosik Kim, Jordi Casanova, Stanislav Y Shvartsman, and Eric Wieschaus. (2012) 2012. “Torso RTK Controls Capicua Degradation by Changing Its Subcellular Localization.”. Development 139 (21): 3962-8.

Goentoro, Lea A, Gregory T Reeves, Craig P Kowal, Luigi Martinelli, Trudi Schüpbach, and Stanislav Y Shvartsman. (2006) 2006. “Quantifying the Gurken Morphogen Gradient in Drosophila Oogenesis.”. Dev Cell 11 (2): 263-72.

Gordon, Peter, V, Christine Sample, Alexander M Berezhkovskii, Cyrill B Muratov, and Stanislav Y Shvartsman. (2011) 2011. “Local Kinetics of Morphogen Gradients.”. Proc Natl Acad Sci U S A 108 (15): 6157-62.

Kanodia, Jitendra S, Richa Rikhy, Yoosik Kim, Viktor K Lund, Robert DeLotto, Jennifer Lippincott-Schwartz, and Stanislav Y Shvartsman. (2009) 2009. “Dynamics of the Dorsal Morphogen Gradient.”. Proc Natl Acad Sci U S A 106 (51): 21707-12.

Qiao, Liang, Robert B Nachbar, Ioannis G Kevrekidis, and Stanislav Y Shvartsman. (2007) 2007. “Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling.”. PLoS Comput Biol 3 (9): 1819-26.

Coppey, Mathieu, Alexander M Berezhkovskii, Stuart C Sealfon, and Stanislav Y Shvartsman. (2007) 2007. “Time and Length Scales of Autocrine Signals in Three Dimensions.”. Biophys J 93 (6): 1917-22.

Berezhkovskii, Alexander M, and Stanislav Y Shvartsman. (2011) 2011. “Physical Interpretation of Mean Local Accumulation Time of Morphogen Gradient Formation.”. J Chem Phys 135 (15): 154115.

Gordon, Peter, V, Cyrill B Muratov, and Stanislav Y Shvartsman. (2013) 2013. “Local Accumulation Times for Source, Diffusion, and Degradation Models in Two and Three Dimensions.”. J Chem Phys 138 (10): 104121.

Shvartsman, Stanislav Y, Mathieu Coppey, and Alexander M Berezhkovskii. (2008) 2008. “Dynamics of Maternal Morphogen Gradients in Drosophila.”. Curr Opin Genet Dev 18 (4): 342-7.

Klein, Daryl E, Valerie M Nappi, Gregory T Reeves, Stanislav Y Shvartsman, and Mark A Lemmon. (2004) 2004. “Argos Inhibits Epidermal Growth Factor Receptor Signalling by Ligand Sequestration.”. Nature 430 (7003): 1040-4.

Osterfield, Miriam, XinXin Du, Trudi Schüpbach, Eric Wieschaus, and Stanislav Y Shvartsman. (2013) 2013. “Three-Dimensional Epithelial Morphogenesis in the Developing Drosophila Egg.”. Dev Cell 24 (4): 400-10.

Cheung, Lily S, Trudi Schüpbach, and Stanislav Y Shvartsman. (2011) 2011. “Pattern Formation by Receptor Tyrosine Kinases: Analysis of the Gurken Gradient in Drosophila Oogenesis.”. Curr Opin Genet Dev 21 (6): 719-25.

Berezhkovskii, Alexander M, Lazaros Batsilas, and Stanislav Y Shvartsman. (2004) 2004. “Ligand Trapping in Epithelial Layers and Cell Cultures.”. Biophys Chem 107 (3): 221-7.

Cheung, Lily S, David S A Simakov, Alisa Fuchs, George Pyrowolakis, and Stanislav Y Shvartsman. (2013) 2013. “Dynamic Model for the Coordination of Two Enhancers of Broad by EGFR Signaling.”. Proc Natl Acad Sci U S A 110 (44): 17939-44.

Rogers, William A, Yogesh Goyal, Kei Yamaya, Stanislav Y Shvartsman, and Michael S Levine. (2017) 2017. “Uncoupling Neurogenic Gene Networks in the Drosophila Embryo.”. Genes Dev 31 (7): 634-38. doi:10.1101/gad.297150.117.

Rushlow, Christine A, and Stanislav Y Shvartsman. (2012) 2012. “Temporal Dynamics, Spatial Range, and Transcriptional Interpretation of the Dorsal Morphogen Gradient.”. Curr Opin Genet Dev 22 (6): 542-6.

Kanodia, Jitendra S, Hsiao-Lan Liang, Yoosik Kim, Bomyi Lim, Mei Zhan, Hang Lu, Christine A Rushlow, and Stanislav Y Shvartsman. (2012) 2012. “Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo.”. Biophys J 102 (3): 427-33.

Monine, Michael I, Alexander M Berezhkovskii, Elizabeth J Joslin, Steven Wiley, Douglas A Lauffenburger, and Stanislav Y Shvartsman. (2005) 2005. “Ligand Accumulation in Autocrine Cell Cultures.”. Biophys J 88 (4): 2384-90.

Yakoby, Nir, Jessica Lembong, Trudi Schüpbach, and Stanislav Y Shvartsman. (2008) 2008. “Drosophila Eggshell Is Patterned by Sequential Action of Feedforward and Feedback Loops.”. Development 135 (2): 343-51.

Song, Yonghyun, Robert A Marmion, Junyoung O Park, Debopriyo Biswas, Joshua D Rabinowitz, and Stanislav Y Shvartsman. (2017) 2017. “Dynamic Control of DNTP Synthesis in Early Embryos.”. Dev Cell 42 (3): 301-308.e3. doi:10.1016/j.devcel.2017.06.013.

Kim, Yoosik, Ze’ev Paroush, Knud Nairz, Ernst Hafen, Gerardo Jiménez, and Stanislav Y Shvartsman. (2011) 2011. “Substrate-Dependent Control of MAPK Phosphorylation in Vivo.”. Mol Syst Biol 7: 467.

Lembong, Jessica, Nir Yakoby, and Stanislav Y Shvartsman. (2009) 2009. “Pattern Formation by Dynamically Interacting Network Motifs.”. Proc Natl Acad Sci U S A 106 (9): 3213-8.

Berezhkovskii, Alexander M, and Stanislav Y Shvartsman. (2013) 2013. “Kinetics of Receptor Occupancy During Morphogen Gradient Formation.”. J Chem Phys 138 (24): 244105.

Pribyl, Michal, Cyrill B Muratov, and Stanislav Y Shvartsman. (2003) 2003. “Discrete Models of Autocrine Cell Communication in Epithelial Layers.”. Biophys J 84 (6): 3624-35.

Song, Yonghyun, Junyoung O Park, Lukas Tanner, Yatsuhisa Nagano, Joshua D Rabinowitz, and Stanislav Y Shvartsman. (2019) 2019. “Energy Budget of Drosophila Embryogenesis.”. Curr Biol 29 (12): R566-R567. doi:10.1016/j.cub.2019.05.025.