Rabinowitz, Joshua D, Peter M Lloyd, Patrik Munzar, Daniel J Myers, Steve Cross, Ramesh Damani, Reynaldo Quintana, Daniel A Spyker, Pravin Soni, and James Cassella V. (2006) 2006. “Ultra-Fast Absorption of Amorphous Pure Drug Aerosols via Deep Lung Inhalation.”. J Pharm Sci 95 (11): 2438-51.

Waters, Christopher M, Wenyun Lu, Joshua D Rabinowitz, and Bonnie L Bassler. (2008) 2008. “Quorum Sensing Controls Biofilm Formation in Vibrio Cholerae through Modulation of Cyclic Di-GMP Levels and Repression of VpsT.”. J Bacteriol 190 (7): 2527-36.

Lu, Wenyun, Yun Kyung Kwon, and Joshua D Rabinowitz. (2007) 2007. “Isotope Ratio-Based Profiling of Microbial Folates.”. J Am Soc Mass Spectrom 18 (5): 898-909.

Castellana, Michele, Maxwell Z Wilson, Yifan Xu, Preeti Joshi, Ileana M Cristea, Joshua D Rabinowitz, Zemer Gitai, and Ned S Wingreen. (2014) 2014. “Enzyme Clustering Accelerates Processing of Intermediates through Metabolic Channeling.”. Nat Biotechnol 32 (10): 1011-8.

DiMaggio, Peter A, Scott R McAllister, Christodoulos A Floudas, Xiao-Jiang Feng, Joshua D Rabinowitz, and Herschel A Rabitz. 2008. “Biclustering via Optimal Re-Ordering of Data Matrices in Systems Biology: Rigorous Methods and Comparative Studies.”. BMC Bioinformatics 9: 458.

Titchenell, Paul M, William J Quinn, Mingjian Lu, Qingwei Chu, Wenyun Lu, Changhong Li, Helen Chen, et al. 2016. “Direct Hepatocyte Insulin Signaling Is Required for Lipogenesis But Is Dispensable for the Suppression of Glucose Production.”. Cell Metab. doi:10.1016/j.cmet.2016.04.022.

Papazyan, Romeo, Zheng Sun, Yong Hoon Kim, Paul M Titchenell, David A Hill, Wenyun Lu, Manashree Damle, et al. (2016) 2016. “Physiological Suppression of Lipotoxic Liver Damage by Complementary Actions of HDAC3 and SCAP SREBP.”. Cell Metab 24 (6): 863-74. doi:10.1016/j.cmet.2016.10.012.

Wooldridge, Amy L, Robert J Bischof, Hong Liu, Gary K Heinemann, Damien S Hunter, Lynne C Giles, Rebecca A Simmons, et al. (2017) 2017. “Late Gestation Maternal Dietary Methyl Donor and Cofactor Supplementation in Sheep Partially Reverses Protection Against Allergic Sensitization by IUGR.”. Am J Physiol Regul Integr Comp Physiol, ajpregu.00549.2016. doi:10.1152/ajpregu.00549.2016.

Li, Sophia Hsin-Jung, Zhiyuan Li, Junyoung O Park, Christopher G King, Joshua D Rabinowitz, Ned S Wingreen, and Zemer Gitai. (2018) 2018. “Escherichia Coli Translation Strategies Differ across Carbon, Nitrogen and Phosphorus Limitation Conditions.”. Nat Microbiol 3 (8): 939-47. doi:10.1038/s41564-018-0199-2.

Liu, Qingkun, Emily M Johnson, Rachel K Lam, Qian Wang, Hong Bo Ye, Edward N Wilson, Paras S Minhas, et al. (2019) 2019. “Peripheral TREM1 Responses to Brain and Intestinal Immunogens Amplify Stroke Severity.”. Nat Immunol 20 (8): 1023-34. doi:10.1038/s41590-019-0421-2.

Rajeshkumar, N, V, Prasanta Dutta, Shinichi Yabuuchi, Roeland F de Wilde, Gary Martinez V, Anne Le, Jurre J Kamphorst, et al. (2015) 2015. “Therapeutic Targeting of the Warburg Effect in Pancreatic Cancer Relies on an Absence of p53 Function.”. Cancer Res 75 (16): 3355-64.

Lemons, Johanna M S, Xiao-Jiang Feng, Bryson D Bennett, Aster Legesse-Miller, Elizabeth L Johnson, Irene Raitman, Elizabeth A Pollina, Herschel A Rabitz, Joshua D Rabinowitz, and Hilary A Coller. 2010. “Quiescent Fibroblasts Exhibit High Metabolic Activity.”. PLoS Biol 8 (10): e1000514.

Kimball, Elizabeth, and Joshua D Rabinowitz. (2006) 2006. “Identifying Decomposition Products in Extracts of Cellular Metabolites.”. Anal Biochem 358 (2): 273-80.

Munger, Joshua, Sunil U Bajad, Hilary A Coller, Thomas Shenk, and Joshua D Rabinowitz. (2006) 2006. “Dynamics of the Cellular Metabolome During Human Cytomegalovirus Infection.”. PLoS Pathog 2 (12): e132.

Xu, Yi-Fan, Wenyun Lu, and Joshua D Rabinowitz. (2015) 2015. “Avoiding Misannotation of in-Source Fragmentation Products As Cellular Metabolites in Liquid Chromatography-Mass Spectrometry-Based Metabolomics.”. Anal Chem 87 (4): 2273-81.

Ducker, Gregory S, Li Chen, Raphael J Morscher, Jonathan M Ghergurovich, Mark Esposito, Xin Teng, Yibin Kang, and Joshua D Rabinowitz. (2016) 2016. “Reversal of Cytosolic One-Carbon Flux Compensates for Loss of the Mitochondrial Folate Pathway.”. Cell Metab. doi:10.1016/j.cmet.2016.04.016.

Hong, Sungguan, Wenjun Zhou, Bin Fang, Wenyun Lu, Emanuele Loro, Manashree Damle, Guolian Ding, et al. (2017) 2017. “Dissociation of Muscle Insulin Sensitivity from Exercise Endurance in Mice by HDAC3 Depletion.”. Nat Med 23 (2): 223-34. doi:10.1038/nm.4245.

Hui, Sheng, Jonathan M Ghergurovich, Raphael J Morscher, Cholsoon Jang, Xin Teng, Wenyun Lu, Lourdes A Esparza, et al. (2017) 2017. “Glucose Feeds the TCA Cycle via Circulating Lactate.”. Nature 551 (7678): 115-18. doi:10.1038/nature24057.

Guan, Dongyin, Ying Xiong, Patricia C Borck, Cholsoon Jang, Paschalis-Thomas Doulias, Romeo Papazyan, Bin Fang, et al. (2018) 2018. “Diet-Induced Circadian Enhancer Remodeling Synchronizes Opposing Hepatic Lipid Metabolic Processes.”. Cell 174 (4): 831-842.e12. doi:10.1016/j.cell.2018.06.031.

Dekhne, Aamod S, Khushbu Shah, Gregory S Ducker, Jade M Katinas, Jennifer Wong-Roushar, Md Junayed Nayeen, Arpit Doshi, et al. (2019) 2019. “Novel pyrrolo[3,2-d]pyrimidine Compounds Target Mitochondrial and Cytosolic One-Carbon Metabolism With Broad-Spectrum Antitumor Efficacy.”. Mol Cancer Ther. doi:10.1158/1535-7163.MCT-19-0037.

Rabinowitz, Joshua D, and Livia Vastag. (2012) 2012. “Teaching the Design Principles of Metabolism.”. Nat Chem Biol 8 (6): 497-501.

Fan, Jing, Jiangbin Ye, Jurre J Kamphorst, Tomer Shlomi, Craig B Thompson, and Joshua D Rabinowitz. (2014) 2014. “Quantitative Flux Analysis Reveals Folate-Dependent NADPH Production.”. Nature 510 (7504): 298-302.

Kamphorst, Jurre J, Justin R Cross, Jing Fan, Elisa de Stanchina, Robin Mathew, Eileen P White, Craig B Thompson, and Joshua D Rabinowitz. (2013) 2013. “Hypoxic and Ras-Transformed Cells Support Growth by Scavenging Unsaturated Fatty Acids from Lysophospholipids.”. Proc Natl Acad Sci U S A 110 (22): 8882-7.

Kwon, Yun Kyung, Wenyun Lu, Eugene Melamud, Nurussaba Khanam, Andrew Bognar, and Joshua D Rabinowitz. (2008) 2008. “A Domino Effect in Antifolate Drug Action in Escherichia Coli.”. Nat Chem Biol 4 (10): 602-8.

Karsli-Uzunbas, Gizem, Jessie Yanxiang Guo, Sandy Price, Xin Teng, Saurabh Laddha V, Sinan Khor, Nada Y Kalaany, et al. (2014) 2014. “Autophagy Is Required for Glucose Homeostasis and Lung Tumor Maintenance.”. Cancer Discov 4 (8): 914-27.

Rabinowitz, Joshua D, and Hilary A Coller. 2016. “Partners in the Warburg Effect.”. Elife 5.

Davidson, Shawn M, Oliver Jonas, Mark A Keibler, Han Wei Hou, Alba Luengo, Jared R Mayers, Jeffrey Wyckoff, et al. (2017) 2017. “Direct Evidence for Cancer-Cell-Autonomous Extracellular Protein Catabolism in Pancreatic Tumors.”. Nat Med 23 (2): 235-41. doi:10.1038/nm.4256.

Ducker, Gregory S, Jonathan M Ghergurovich, Nello Mainolfi, Vipin Suri, Stephanie K Jeong, Sophia Hsin-Jung Li, Adam Friedman, et al. (2017) 2017. “Human SHMT Inhibitors Reveal Defective Glycine Import As a Targetable Metabolic Vulnerability of Diffuse Large B-Cell Lymphoma.”. Proc Natl Acad Sci U S A 114 (43): 11404-9. doi:10.1073/pnas.1706617114.

Hui, Sheng, and Joshua D Rabinowitz. (2018) 2018. “An Unexpected Trigger for Calorie Burning in Brown Fat.”. Nature 560 (7716): 38-39. doi:10.1038/d41586-018-05619-7.

Ron-Harel, Noga, Jonathan M Ghergurovich, Giulia Notarangelo, Martin W LaFleur, Yoshiki Tsubosaka, Arlene H Sharpe, Joshua D Rabinowitz, and Marcia C Haigis. (2019) 2019. “T Cell Activation Depends on Extracellular Alanine.”. Cell Rep 28 (12): 3011-3021.e4. doi:10.1016/j.celrep.2019.08.034.

Munger, Joshua, Bryson D Bennett, Anuraag Parikh, Xiao-Jiang Feng, Jessica McArdle, Herschel A Rabitz, Thomas Shenk, and Joshua D Rabinowitz. (2008) 2008. “Systems-Level Metabolic Flux Profiling Identifies Fatty Acid Synthesis As a Target for Antiviral Therapy.”. Nat Biotechnol 26 (10): 1179-86.

Kamphorst, Jurre J, Michelle K Chung, Jing Fan, and Joshua D Rabinowitz. 2014. “Quantitative Analysis of Acetyl-CoA Production in Hypoxic Cancer Cells Reveals Substantial Contribution from Acetate.”. Cancer Metab 2: 23.

Fan, Jing, Xin Teng, Ling Liu, Katherine R Mattaini, Ryan E Looper, Matthew G Vander Heiden, and Joshua D Rabinowitz. (2014) 2014. “Human Phosphoglycerate Dehydrogenase Produces the Oncometabolite D-2-Hydroxyglutarate.”. ACS Chem Biol.

Piazza, Matthew, Xiao-Jiang Feng, Joshua D Rabinowitz, and Herschel Rabitz. (2008) 2008. “Diverse Metabolic Model Parameters Generate Similar Methionine Cycle Dynamics.”. J Theor Biol 251 (4): 628-39.

Rabinowitz, Joshua D, and Eileen White. (2010) 2010. “Autophagy and Metabolism.”. Science 330 (6009): 1344-8.

Zong, Wei-Xing, Joshua D Rabinowitz, and Eileen White. (2016) 2016. “Mitochondria and Cancer.”. Mol Cell 61 (5): 667-76.

Su, Xiaoyang, Wenyun Lu, and Joshua D Rabinowitz. (2017) 2017. “Metabolite Spectral Accuracy on Orbitraps.”. Anal Chem 89 (11): 5940-48. doi:10.1021/acs.analchem.7b00396.

Pavlova, Natalya N, Sheng Hui, Jonathan M Ghergurovich, Jing Fan, Andrew M Intlekofer, Richard M White, Joshua D Rabinowitz, Craig B Thompson, and Ji Zhang. (2018) 2018. “As Extracellular Glutamine Levels Decline, Asparagine Becomes an Essential Amino Acid.”. Cell Metab 27 (2): 428-438.e5. doi:10.1016/j.cmet.2017.12.006.

Xu, Yi-Fan, Wenyun Lu, Jonathan C Chen, Sarah A Johnson, Patrick A Gibney, David G Thomas, Greg Brown, et al. (2018) 2018. “Discovery and Functional Characterization of a Yeast Sugar Alcohol Phosphatase.”. ACS Chem Biol 13 (10): 3011-20. doi:10.1021/acschembio.8b00804.

Park, Junyoung O, Lukas B Tanner, Monica H Wei, Daven B Khana, Tyler B Jacobson, Zheyun Zhang, Sara A Rubin, et al. (2019) 2019. “Near-Equilibrium Glycolysis Supports Metabolic Homeostasis and Energy Yield.”. Nat Chem Biol 15 (10): 1001-8. doi:10.1038/s41589-019-0364-9.

Amador-Noguez, Daniel, Xiao-Jiang Feng, Jing Fan, Nathaniel Roquet, Herschel Rabitz, and Joshua D Rabinowitz. (2010) 2010. “Systems-Level Metabolic Flux Profiling Elucidates a Complete, Bifurcated Tricarboxylic Acid Cycle in Clostridium Acetobutylicum.”. J Bacteriol 192 (17): 4452-61.

Reaves, Marshall Louis, Brian D Young, Aaron M Hosios, Yi-Fan Xu, and Joshua D Rabinowitz. (2013) 2013. “Pyrimidine Homeostasis Is Accomplished by Directed Overflow Metabolism.”. Nature 500 (7461): 237-41.

Kamphorst, Jurre J, Michel Nofal, Cosimo Commisso, Sean R Hackett, Wenyun Lu, Elda Grabocka, Matthew G Vander Heiden, et al. (2015) 2015. “Human Pancreatic Cancer Tumors Are Nutrient Poor and Tumor Cells Actively Scavenge Extracellular Protein.”. Cancer Res 75 (3): 544-53.

Vastag, Livia, Emre Koyuncu, Sarah L Grady, Thomas E Shenk, and Joshua D Rabinowitz. (2011) 2011. “Divergent Effects of Human Cytomegalovirus and Herpes Simplex Virus-1 on Cellular Metabolism.”. PLoS Pathog 7 (7): e1002124.

Zhang, Ji, Jing Fan, Sriram Venneti, Justin R Cross, Toshimitsu Takagi, Bhavneet Bhinder, Hakim Djaballah, et al. (2014) 2014. “Asparagine Plays a Critical Role in Regulating Cellular Adaptation to Glutamine Depletion.”. Mol Cell 56 (2): 205-18.

Park, Junyoung O, Sara A Rubin, Yi-Fan Xu, Daniel Amador-Noguez, Jing Fan, Tomer Shlomi, and Joshua D Rabinowitz. (2016) 2016. “Metabolite Concentrations, Fluxes and Free Energies Imply Efficient Enzyme Usage.”. Nat Chem Biol.

Lu, Wenyun, Lin Wang, Li Chen, Sheng Hui, and Joshua D Rabinowitz. (2017) 2017. “Extraction and Quantitation of Nicotinamide Adenine Dinucleotide Redox Cofactors.”. Antioxid Redox Signal. doi:10.1089/ars.2017.7014.

Morscher, Raphael J, Gregory S Ducker, Sophia Hsin-Jung Li, Johannes A Mayer, Zemer Gitai, Wolfgang Sperl, and Joshua D Rabinowitz. (2018) 2018. “Mitochondrial Translation Requires Folate-Dependent TRNA Methylation.”. Nature 554 (7690): 128-32. doi:10.1038/nature25460.

Poillet-Perez, Laura, Xiaoqi Xie, Le Zhan, Yang Yang, Daniel W Sharp, Zhixian Sherrie Hu, Xiaoyang Su, et al. (2018) 2018. “Autophagy Maintains Tumour Growth through Circulating Arginine.”. Nature 563 (7732): 569-73. doi:10.1038/s41586-018-0697-7.

Stine, Rachel R, Alexander P Sakers, Tara TeSlaa, Megan Kissig, Zachary E Stine, Chan Wook Kwon, Lan Cheng, et al. (2019) 2019. “PRDM16 Maintains Homeostasis of the Intestinal Epithelium by Controlling Region-Specific Metabolism.”. Cell Stem Cell. doi:10.1016/j.stem.2019.08.017.