Papatsenko, Dmitri, Yury Goltsev, and Michael Levine. (2009) 2009. “Organization of Developmental Enhancers in the Drosophila Embryo.”. Nucleic Acids Res 37 (17): 5665-77.

Abitua, Philip Barron, Eileen Wagner, Ignacio A Navarrete, and Michael Levine. (2012) 2012. “Identification of a Rudimentary Neural Crest in a Non-Vertebrate Chordate.”. Nature 492 (7427): 104-7.

Gainous, Blair, Eileen Wagner, and Michael Levine. (2015) 2015. “Diverse ETS Transcription Factors Mediate FGF Signaling in the Ciona Anterior Neural Plate.”. Dev Biol.

Abitua, Philip Barron, Blair Gainous, Angela N Kaczmarczyk, Christopher J Winchell, Clare Hudson, Kaori Kamata, Masashi Nakagawa, Motoyuki Tsuda, Takehiro G Kusakabe, and Michael Levine. (2015) 2015. “The Pre-Vertebrate Origins of Neurogenic Placodes.”. Nature 524 (7566): 462-5.

Chopra, Vivek S, Jessica Doran Cande, Joung-Woo Hong, and Michael Levine. (2009) 2009. “Stalled Hox Promoters As Chromosomal Boundaries.”. Genes Dev 23 (13): 1505-9.

Stolfi, Alberto, and Michael Levine. (2011) 2011. “Neuronal Subtype Specification in the Spinal Cord of a Protovertebrate.”. Development 138 (5): 995-1004.

Farley, Emma, and Michael Levine. (2012) 2012. “HOT DNAs: A Novel Class of Developmental Enhancers.”. Genes Dev 26 (9): 873-6.

Goltsev, Yury, Gustavo L Rezende, Karen Vranizan, Greg Lanzaro, Denise Valle, and Michael Levine. (2009) 2009. “Developmental and Evolutionary Basis for Drought Tolerance of the Anopheles Gambiae Embryo.”. Dev Biol 330 (2): 462-70.

Ferraro, Teresa, Emilia Esposito, Laure Mancini, Sam Ng, Tanguy Lucas, Mathieu Coppey, Nathalie Dostatni, Aleksandra M Walczak, Michael Levine, and Mounia Lagha. (2016) 2016. “Transcriptional Memory in the Drosophila Embryo.”. Curr Biol 26 (2): 212-8.

Christiaen, Lionel, Alberto Stolfi, Brad Davidson, and Michael Levine. (2009) 2009. “Spatio-Temporal Intersection of Lhx3 and Tbx6 Defines the Cardiac Field through Synergistic Activation of Mesp.”. Dev Biol 328 (2): 552-60.

Hilgers, Valérie, Michael W Perry, David Hendrix, Alexander Stark, Michael Levine, and Benjamin Haley. (2011) 2011. “Neural-Specific Elongation of 3’ UTRs During Drosophila Development.”. Proc Natl Acad Sci U S A 108 (38): 15864-9.

Harafuji, Naoe, David N Keys, and Michael Levine. (2002) 2002. “Genome-Wide Identification of Tissue-Specific Enhancers in the Ciona Tadpole.”. Proc Natl Acad Sci U S A 99 (10): 6802-5.

Bothma, Jacques P, and Michael Levine. (2013) 2013. “Development: Lights, Camera, Action--the Drosophila Embryo Goes Live!”. Curr Biol 23 (21).

El-Sherif, Ezzat, and Michael Levine. (2016) 2016. “Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo.”. Curr Biol 26 (9): 1164-9.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “X-Gal Staining of Electroporated Sea Squirt (Ciona) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5346.

Cowden, John, and Michael Levine. (2002) 2002. “The Snail Repressor Positions Notch Signaling in the Drosophila Embryo.”. Development 129 (7): 1785-93.

Stolfi, Alberto, Eileen Wagner, Matthew Taliaferro, Seemay Chou, and Michael Levine. (2011) 2011. “Neural Tube Patterning by Ephrin, FGF and Notch Signaling Relays.”. Development 138 (24): 5429-39.

Levine, Michael, and Eric H Davidson. (2005) 2005. “Gene Regulatory Networks for Development.”. Proc Natl Acad Sci U S A 102 (14): 4936-42.

Markstein, Michele, and Michael Levine. (2002) 2002. “Decoding Cis-Regulatory DNAs in the Drosophila Genome.”. Curr Opin Genet Dev 12 (5): 601-6.

Bothma, Jacques P, Hernan G Garcia, Samuel Ng, Michael W Perry, Thomas Gregor, and Michael Levine. 2015. “Enhancer Additivity and Non-Additivity Are Determined by Enhancer Strength in the Drosophila Embryo.”. Elife 4.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Whole-Mount in Situ Hybridization on Sea Squirt (Ciona Intestinalis) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5348.

Bothma, Jacques P, Joe Magliocco, and Michael Levine. (2011) 2011. “The Snail Repressor Inhibits Release, Not Elongation, of Paused Pol II in the Drosophila Embryo.”. Curr Biol 21 (18): 1571-7.

Perry, Michael W, Alistair N Boettiger, and Michael Levine. (2011) 2011. “Multiple Enhancers Ensure Precision of Gap Gene-Expression Patterns in the Drosophila Embryo.”. Proc Natl Acad Sci U S A 108 (33): 13570-5.

Shi, Weiyang, Sara M Peyrot, Edwin Munro, and Michael Levine. (2009) 2009. “FGF3 in the Floor Plate Directs Notochord Convergent Extension in the Ciona Tadpole.”. Development 136 (1): 23-8.

Nibu, Yutaka, Kate Senger, and Michael Levine. (2003) 2003. “CtBP-Independent Repression in the Drosophila Embryo.”. Mol Cell Biol 23 (11): 3990-9.

Esposito, Emilia, Bomyi Lim, Ghita Guessous, Hanieh Falahati, and Michael Levine. (2016) 2016. “Mitosis-Associated Repression in Development.”. Genes Dev 30 (13): 1503-8. doi:10.1101/gad.281188.116.

Stathopoulos, Angelike, and Michael Levine. (2002) 2002. “Whole-Genome Expression Profiles Identify Gene Batteries in Drosophila.”. Dev Cell 3 (4): 464-5.

Haley, Benjamin, David Hendrix, Vinh Trang, and Michael Levine. (2008) 2008. “A Simplified MiRNA-Based Gene Silencing Method for Drosophila Melanogaster.”. Dev Biol 321 (2): 482-90.

Bothma, Jacques P, Michael Levine, and Alistair N Boettiger. (2010) 2010. “Morphogen Gradients: Limits to Signaling or Limits to Measurement?”. Curr Biol 20 (5).

Wagner, Eileen, and Michael Levine. (2012) 2012. “FGF Signaling Establishes the Anterior Border of the Ciona Neural Tube.”. Development 139 (13): 2351-9.

Calhoun, Vincent C, and Michael Levine. (2003) 2003. “Coordinate Regulation of an Extended Chromosome Domain.”. Cell 113 (3): 278-80.

Fukaya, Takashi, Bomyi Lim, and Michael Levine. (2016) 2016. “Enhancer Control of Transcriptional Bursting.”. Cell 166 (2): 358-68. doi:10.1016/j.cell.2016.05.025.

Stathopoulos, Angelike, and Michael Levine. (2004) 2004. “Whole-Genome Analysis of Drosophila Gastrulation.”. Curr Opin Genet Dev 14 (5): 477-84.

Perry, Michael W, Alistair N Boettiger, Jacques P Bothma, and Michael Levine. (2010) 2010. “Shadow Enhancers Foster Robustness of Drosophila Gastrulation.”. Curr Biol 20 (17): 1562-7.

Hendrix, David, Michael Levine, and Weiyang Shi. 2010. “MiRTRAP, a Computational Method for the Systematic Identification of MiRNAs from High Throughput Sequencing Data.”. Genome Biol 11 (4): R39.

Berman, Benjamin P, Yutaka Nibu, Barret D Pfeiffer, Pavel Tomancak, Susan E Celniker, Michael Levine, Gerald M Rubin, and Michael B Eisen. (2002) 2002. “Exploiting Transcription Factor Binding Site Clustering to Identify Cis-Regulatory Modules Involved in Pattern Formation in the Drosophila Genome.”. Proc Natl Acad Sci U S A 99 (2): 757-62.

Erives, Albert, and Michael Levine. (2004) 2004. “Coordinate Enhancers Share Common Organizational Features in the Drosophila Genome.”. Proc Natl Acad Sci U S A 101 (11): 3851-6.

Navarrete, Ignacio A, and Michael Levine. (2016) 2016. “Nodal and FGF Coordinate Ascidian Neural Tube Morphogenesis.”. Development 143 (24): 4665-75. doi:10.1242/dev.144733.

Stathopoulos, Angelike, Madeleine Van Drenth, Albert Erives, Michele Markstein, and Michael Levine. (2002) 2002. “Whole-Genome Analysis of Dorsal-Ventral Patterning in the Drosophila Embryo.”. Cell 111 (5): 687-701.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “The Sea Squirt Ciona Intestinalis.”. Cold Spring Harb Protoc 2009 (12): pdb.emo138.

Christiaen, Lionel, Eileen Wagner, Weiyang Shi, and Michael Levine. (2009) 2009. “Microinjection of Morpholino Oligos and RNAs in Sea Squirt (Ciona) Embryos.”. Cold Spring Harb Protoc 2009 (12): pdb.prot5347.

Cande, Jessica Doran, Vivek S Chopra, and Michael Levine. (2009) 2009. “Evolving Enhancer-Promoter Interactions Within the Tinman Complex of the Flour Beetle, Tribolium Castaneum.”. Development 136 (18): 3153-60.

Keys, David N, Michael Levine, Richard M Harland, and John B Wallingford. (2002) 2002. “Control of Intercalation Is Cell-Autonomous in the Notochord of Ciona Intestinalis.”. Dev Biol 246 (2): 329-40.

Fukaya, Takashi, and Michael Levine. (2017) 2017. “Transvection.”. Curr Biol 27 (19): R1047-R1049. doi:10.1016/j.cub.2017.08.001.

Cowden, John, and Michael Levine. (2003) 2003. “Ventral Dominance Governs Sequential Patterns of Gene Expression across the Dorsal-Ventral Axis of the Neuroectoderm in the Drosophila Embryo.”. Dev Biol 262 (2): 335-49.

Levine, Michael. (2014) 2014. “Retrospective. Walter Gehring (1939-2014).”. Science 345 (6194): 277.

Lagha, Mounia, Jacques P Bothma, and Michael Levine. (2012) 2012. “Mechanisms of Transcriptional Precision in Animal Development.”. Trends Genet 28 (8): 409-16.

Davidson, Brad, and Michael Levine. (2003) 2003. “Evolutionary Origins of the Vertebrate Heart: Specification of the Cardiac Lineage in Ciona Intestinalis.”. Proc Natl Acad Sci U S A 100 (20): 11469-73.

Levine, Michael. (2014) 2014. “The Contraction of Time and Space in Remote Chromosomal Interactions.”. Cell 158 (2): 243-4.

Fukaya, Takashi, Bomyi Lim, and Michael Levine. (2017) 2017. “Rapid Rates of Pol II Elongation in the Drosophila Embryo.”. Curr Biol 27 (9): 1387-91. doi:10.1016/j.cub.2017.03.069.