Bloom, Joshua S, Zia Khan, Leonid Kruglyak, Mona Singh, and Amy A Caudy. 2009. “Measuring Differential Gene Expression by Short Read Sequencing: Quantitative Comparison to 2-Channel Gene Expression Microarrays.”. BMC Genomics 10: 221. Reference Link
Gresham, David, Douglas M Ruderfer, Stephen C Pratt, Joseph Schacherer, Maitreya Dunham, David Botstein, and Leonid Kruglyak. (2006) 2006. “Genome-Wide Detection of Polymorphisms at Nucleotide Resolution With a Single DNA Microarray.”. Science 311 (5769): 1932-6. Reference Link
Schacherer, Joseph, Douglas M Ruderfer, David Gresham, Kara Dolinski, David Botstein, and Leonid Kruglyak. 2007. “Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces Cerevisiae Strains.”. PLoS One 2 (3): e322. Reference Link
Breunig, Jeffrey S, Sean R Hackett, Joshua D Rabinowitz, and Leonid Kruglyak. (2014) 2014. “Genetic Basis of Metabolome Variation in Yeast.”. PLoS Genet 10 (3): e1004142. Reference Link
Reisser, Cyrielle, Cindy Dick, Leonid Kruglyak, David Botstein, Joseph Schacherer, and David Hess. (2013) 2013. “Genetic Basis of Ammonium Toxicity Resistance in a Sake Strain of Yeast: A Mendelian Case.”. G3 (Bethesda). Reference Link
Khan, Zia, Sasan Amini, Joshua S Bloom, Cristian Ruse, Amy A Caudy, Leonid Kruglyak, Mona Singh, David H Perlman, and Saeed Tavazoie. 2011. “Accurate Proteome-Wide Protein Quantification from High-Resolution 15N Mass Spectra.”. Genome Biol 12 (12): R122. Reference Link
Reaves, Marshall Louis, Sunita Sinha, Joshua D Rabinowitz, Leonid Kruglyak, and Rosemary J Redfield. (2012) 2012. “Absence of Detectable Arsenate in DNA from Arsenate-Grown GFAJ-1 Cells.”. Science 337 (6093): 470-3. Reference Link
Khan, Zia, Joshua S Bloom, Sasan Amini, Mona Singh, David H Perlman, Amy A Caudy, and Leonid Kruglyak. 2012. “Quantitative Measurement of Allele-Specific Protein Expression in a Diploid Yeast Hybrid by LC-MS.”. Mol Syst Biol 8: 602. Reference Link
Khan, Zia, Joshua S Bloom, Benjamin A Garcia, Mona Singh, and Leonid Kruglyak. (2009) 2009. “Protein Quantification across Hundreds of Experimental Conditions.”. Proc Natl Acad Sci U S A 106 (37): 15544-8. Reference Link
Khan, Zia, Joshua S Bloom, Leonid Kruglyak, and Mona Singh. (2009) 2009. “A Practical Algorithm for Finding Maximal Exact Matches in Large Sequence Datasets Using Sparse Suffix Arrays.”. Bioinformatics 25 (13): 1609-16. Reference Link
Gresham, David, Bo Curry, Alexandra Ward, Benjamin Gordon, Leonardo Brizuela, Leonid Kruglyak, and David Botstein. (2010) 2010. “Optimized Detection of Sequence Variation in Heterozygous Genomes Using DNA Microarrays With Isothermal-Melting Probes.”. Proc Natl Acad Sci U S A 107 (4): 1482-7. Reference Link