Fisk, Dianna G, Catherine A Ball, Kara Dolinski, Stacia R Engel, Eurie L Hong, Laurie Issel-Tarver, Katja Schwartz, et al. (2006) 2006. “Saccharomyces Cerevisiae S288C Genome Annotation: A Working Hypothesis.”. Yeast 23 (12): 857-65.

Lee, Young-suk, Arjun Krishnan, Rose Oughtred, Jennifer Rust, Christie S Chang, Joseph Ryu, Vessela N Kristensen, Kara Dolinski, Chandra L Theesfeld, and Olga G Troyanskaya. (2019) 2019. “A Computational Framework for Genome-Wide Characterization of the Human Disease Landscape.”. Cell Syst 8 (2): 152-162.e6. doi:10.1016/j.cels.2018.12.010.

Salwinski, Lukasz, Luana Licata, Andrew Winter, David Thorneycroft, Jyoti Khadake, Arnaud Ceol, Andrew Chatr Aryamontri, et al. (2009) 2009. “Recurated Protein Interaction Datasets.”. Nat Methods 6 (12): 860-1.

Heinicke, Sven, Michael S Livstone, Charles Lu, Rose Oughtred, Fan Kang, Samuel Angiuoli V, Owen White, David Botstein, and Kara Dolinski. 2007. “The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists.”. PLoS One 2 (8): e766.

Dolinski, Kara, and David Botstein. 2007. “Orthology and Functional Conservation in Eukaryotes.”. Annu Rev Genet 41: 465-507.

Dolinski, Kara, and Olga G Troyanskaya. (2015) 2015. “Implications of Big Data for Cell Biology.”. Mol Biol Cell 26 (14): 2575-8.

Brauer, Matthew J, Alok J Saldanha, Kara Dolinski, and David Botstein. (2005) 2005. “Homeostatic Adjustment and Metabolic Remodeling in Glucose-Limited Yeast Cultures.”. Mol Biol Cell 16 (5): 2503-17.

Schacherer, Joseph, Douglas M Ruderfer, David Gresham, Kara Dolinski, David Botstein, and Leonid Kruglyak. 2007. “Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces Cerevisiae Strains.”. PLoS One 2 (3): e322.

Hirschman, Jodi E, Rama Balakrishnan, Karen R Christie, Maria C Costanzo, Selina S Dwight, Stacia R Engel, Dianna G Fisk, et al. (2006) 2006. “Genome Snapshot: A New Resource at the Saccharomyces Genome Database (SGD) Presenting an Overview of the Saccharomyces Cerevisiae Genome.”. Nucleic Acids Res 34 (Database issue).

Hong, Eurie L, Rama Balakrishnan, Qing Dong, Karen R Christie, Julie Park, Gail Binkley, Maria C Costanzo, et al. (2008) 2008. “Gene Ontology Annotations at SGD: New Data Sources and Annotation Methods.”. Nucleic Acids Res 36 (Database issue).

Greene, Casey S, Arjun Krishnan, Aaron K Wong, Emanuela Ricciotti, Rene A Zelaya, Daniel S Himmelstein, Ran Zhang, et al. (2015) 2015. “Understanding Multicellular Function and Disease With Human Tissue-Specific Networks.”. Nat Genet 47 (6): 569-76.

Balakrishnan, Rama, Karen R Christie, Maria C Costanzo, Kara Dolinski, Selina S Dwight, Stacia R Engel, Dianna G Fisk, et al. (2005) 2005. “Fungal BLAST and Model Organism BLASTP Best Hits: New Comparison Resources at the Saccharomyces Genome Database (SGD).”. Nucleic Acids Res 33 (Database issue).

Dwight, Selina S, Rama Balakrishnan, Karen R Christie, Maria C Costanzo, Kara Dolinski, Stacia R Engel, Becket Feierbach, et al. (2004) 2004. “Saccharomyces Genome Database: Underlying Principles and Organisation.”. Brief Bioinform 5 (1): 9-22.

Nash, Robert, Shuai Weng, Ben Hitz, Rama Balakrishnan, Karen R Christie, Maria C Costanzo, Selina S Dwight, et al. (2007) 2007. “Expanded Protein Information at SGD: New Pages and Proteome Browser.”. Nucleic Acids Res 35 (Database issue).

Christie, Karen R, Shuai Weng, Rama Balakrishnan, Maria C Costanzo, Kara Dolinski, Selina S Dwight, Stacia R Engel, et al. (2004) 2004. “Saccharomyces Genome Database (SGD) Provides Tools to Identify and Analyze Sequences from Saccharomyces Cerevisiae and Related Sequences from Other Organisms.”. Nucleic Acids Res 32 (Database issue).

Myers, Chad L, Drew Robson, Adam Wible, Matthew A Hibbs, Camelia Chiriac, Chandra L Theesfeld, Kara Dolinski, and Olga G Troyanskaya. 2005. “Discovery of Biological Networks from Diverse Functional Genomic Data.”. Genome Biol 6 (13): R114.

Dwight, Selina S, Midori A Harris, Kara Dolinski, Catherine A Ball, Gail Binkley, Karen R Christie, Dianna G Fisk, et al. (2002) 2002. “Saccharomyces Genome Database (SGD) Provides Secondary Gene Annotation Using the Gene Ontology (GO).”. Nucleic Acids Res 30 (1): 69-72.

Reguly, Teresa, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, et al. 2006. “Comprehensive Curation and Analysis of Global Interaction Networks in Saccharomyces Cerevisiae.”. J Biol 5 (4): 11.

Weng, Shuai, Qing Dong, Rama Balakrishnan, Karen R Christie, Maria Costanzo, Kara Dolinski, Selina S Dwight, et al. (2003) 2003. “Saccharomyces Genome Database (SGD) Provides Biochemical and Structural Information for Budding Yeast Proteins.”. Nucleic Acids Res 31 (1): 216-8.

Dolinski, Kara, and David Botstein. (2005) 2005. “Changing Perspectives in Yeast Research Nearly a Decade After the Genome Sequence.”. Genome Res 15 (12): 1611-9.

Engel, Stacia R, Rama Balakrishnan, Gail Binkley, Karen R Christie, Maria C Costanzo, Selina S Dwight, Dianna G Fisk, et al. (2010) 2010. “Saccharomyces Genome Database Provides Mutant Phenotype Data.”. Nucleic Acids Res 38 (Database issue).

Troyanskaya, Olga G, Kara Dolinski, Art B Owen, Russ B Altman, and David Botstein. (2003) 2003. “A Bayesian Framework for Combining Heterogeneous Data Sources for Gene Function Prediction (in Saccharomyces cerevisiae).”. Proc Natl Acad Sci U S A 100 (14): 8348-53.

Issel-Tarver, Laurie, Karen R Christie, Kara Dolinski, Rey Andrada, Rama Balakrishnan, Catherine A Ball, Gail Binkley, et al. 2002. “Saccharomyces Genome Database.”. Methods Enzymol 350: 329-46.

Dolinski, Kara, and David Botstein. (2013) 2013. “Automating the Construction of Gene Ontologies.”. Nat Biotechnol 31 (1): 34-5.