Gregor, Thomas, Eric F Wieschaus, Alistair P McGregor, William Bialek, and David W Tank. (2007) 2007. “Stability and Nuclear Dynamics of the Bicoid Morphogen Gradient.”. Cell 130 (1): 141-52.

Osborne, Leslie C, Stephanie E Palmer, Stephen G Lisberger, and William Bialek. (2008) 2008. “The Neural Basis for Combinatorial Coding in a Cortical Population Response.”. J Neurosci 28 (50): 13522-31.

Stephens, Greg J, Bethany Johnson-Kerner, William Bialek, and William S Ryu. (2008) 2008. “Dimensionality and Dynamics in the Behavior of C. Elegans.”. PLoS Comput Biol 4 (4): e1000028.

Bialek, William, Andrea Cavagna, Irene Giardina, Thierry Mora, Oliver Pohl, Edmondo Silvestri, Massimiliano Viale, and Aleksandra M Walczak. (2014) 2014. “Social Interactions Dominate Speed Control in Poising Natural Flocks Near Criticality.”. Proc Natl Acad Sci U S A 111 (20): 7212-7.

Schneidman, Elad, Susanne Still, Michael J Berry, and William Bialek. (2003) 2003. “Network Information and Connected Correlations.”. Phys Rev Lett 91 (23): 238701.

Tkačik, Gašper, and William Bialek. (2009) 2009. “Diffusion, Dimensionality, and Noise in Transcriptional Regulation.”. Phys Rev E Stat Nonlin Soft Matter Phys 79 (5 Pt 1): 051901.

Osborne, Leslie C, Stephen G Lisberger, and William Bialek. (2005) 2005. “A Sensory Source for Motor Variation.”. Nature 437 (7057): 412-6.

Krotov, Dmitry, Julien Dubuis, Thomas Gregor, and William Bialek. (2014) 2014. “Morphogenesis at Criticality.”. Proc Natl Acad Sci U S A 111 (10): 3683-8.

Gregor, Thomas, William Bialek, Rob R de Ruyter van Steveninck, David W Tank, and Eric F Wieschaus. (2005) 2005. “Diffusion and Scaling During Early Embryonic Pattern Formation.”. Proc Natl Acad Sci U S A 102 (51): 18403-7.

Stephens, Greg J, Leslie C Osborne, and William Bialek. (2011) 2011. “Searching for Simplicity in the Analysis of Neurons and Behavior.”. Proc Natl Acad Sci U S A 108 Suppl 3: 15565-71.

Mora, Thierry, Aleksandra M Walczak, William Bialek, and Curtis G Callan. (2010) 2010. “Maximum Entropy Models for Antibody Diversity.”. Proc Natl Acad Sci U S A 107 (12): 5405-10.

Bialek, William, and Sima Setayeshgar. (2008) 2008. “Cooperativity, Sensitivity, and Noise in Biochemical Signaling.”. Phys Rev Lett 100 (25): 258101.

Tkačik, Gašper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek, and Michael J Berry. (2014) 2014. “Searching for Collective Behavior in a Large Network of Sensory Neurons.”. PLoS Comput Biol 10 (1): e1003408.

Rajan, Kanaka, and William Bialek. 2013. “Maximally Informative ‘stimulus Energies’ in the Analysis of Neural Responses to Natural Signals.”. PLoS One 8 (11): e71959.

Agüera y Arcas, Blaise, Adrienne L Fairhall, and William Bialek. (2003) 2003. “Computation in a Single Neuron: Hodgkin and Huxley Revisited.”. Neural Comput 15 (8): 1715-49.

Tkačik, Gašper, Thomas Gregor, and William Bialek. 2008. “The Role of Input Noise in Transcriptional Regulation.”. PLoS One 3 (7): e2774.

Berman, Gordon J, Daniel M Choi, William Bialek, and Joshua W Shaevitz. (2014) 2014. “Mapping the Stereotyped Behaviour of Freely Moving Fruit Flies.”. J R Soc Interface 11 (99).

Sharpee, Tatyana, Nicole C Rust, and William Bialek. (2004) 2004. “Analyzing Neural Responses to Natural Signals: Maximally Informative Dimensions.”. Neural Comput 16 (2): 223-50.

Bialek, William. (2013) 2013. “QnAs With William Bialek.”. Proc Natl Acad Sci U S A 110 (41): 16288.

Castellana, Michele, and William Bialek. (2014) 2014. “Inverse Spin Glass and Related Maximum Entropy Problems.”. Phys Rev Lett 113 (11): 117204.

Berman, Gordon J, William Bialek, and Joshua W Shaevitz. (2016) 2016. “Predictability and Hierarchy in Drosophila Behavior.”. Proc Natl Acad Sci U S A 113 (42): 11943-48. doi:10.1073/pnas.1607601113.

Schneidman, Elad, Michael J Berry, Ronen Segev, and William Bialek. (2006) 2006. “Weak Pairwise Correlations Imply Strongly Correlated Network States in a Neural Population.”. Nature 440 (7087): 1007-12.

Gregor, Thomas, David W Tank, Eric F Wieschaus, and William Bialek. (2007) 2007. “Probing the Limits to Positional Information.”. Cell 130 (1): 153-64.

Bialek, William, and David Botstein. (2004) 2004. “Introductory Science and Mathematics Education for 21st-Century Biologists.”. Science 303 (5659): 788-90.

Osborne, Leslie C, Sonja S Hohl, William Bialek, and Stephen G Lisberger. (2007) 2007. “Time Course of Precision in Smooth-Pursuit Eye Movements of Monkeys.”. J Neurosci 27 (11): 2987-98.

Dubuis, Julien, Gašper Tkačik, Eric F Wieschaus, Thomas Gregor, and William Bialek. (2013) 2013. “Positional Information, in Bits.”. Proc Natl Acad Sci U S A 110 (41): 16301-8.

Slonim, Noam, Gurinder Singh Atwal, Gašper Tkačik, and William Bialek. (2005) 2005. “Information-Based Clustering.”. Proc Natl Acad Sci U S A 102 (51): 18297-302.

Osborne, Leslie C, William Bialek, and Stephen G Lisberger. (2004) 2004. “Time Course of Information about Motion Direction in Visual Area MT of Macaque Monkeys.”. J Neurosci 24 (13): 3210-22.

Bialek, William, and Sima Setayeshgar. (2005) 2005. “Physical Limits to Biochemical Signaling.”. Proc Natl Acad Sci U S A 102 (29): 10040-5.

Tkačik, Gašper, Curtis G Callan, and William Bialek. (2008) 2008. “Information Flow and Optimization in Transcriptional Regulation.”. Proc Natl Acad Sci U S A 105 (34): 12265-70.

Schneidman, Elad, William Bialek, and Michael J Berry. (2003) 2003. “Synergy, Redundancy, and Independence in Population Codes.”. J Neurosci 23 (37): 11539-53.

Tkačik, Gašper, Aleksandra M Walczak, and William Bialek. (2012) 2012. “Optimizing Information Flow in Small Genetic Networks. III. A Self-Interacting Gene.”. Phys Rev E Stat Nonlin Soft Matter Phys 85 (4 Pt 1): 041903.

Adelman, Thomas L, William Bialek, and Robert M Olberg. (2003) 2003. “The Information Content of Receptive Fields.”. Neuron 40 (4): 823-33.

Schneidman, Elad, Jason L Puchalla, Ronen Segev, Robert A Harris, William Bialek, and Michael J Berry. (2011) 2011. “Synergy from Silence in a Combinatorial Neural Code.”. J Neurosci 31 (44): 15732-41.

Walczak, Aleksandra M, Gašper Tkačik, and William Bialek. (2010) 2010. “Optimizing Information Flow in Small Genetic Networks. II. Feed-Forward Interactions.”. Phys Rev E Stat Nonlin Soft Matter Phys 81 (4 Pt 1): 041905.

Tkačik, Gašper, Curtis G Callan, and William Bialek. (2008) 2008. “Information Capacity of Genetic Regulatory Elements.”. Phys Rev E Stat Nonlin Soft Matter Phys 78 (1 Pt 1): 011910.

Stephens, Greg J, Thierry Mora, Gašper Tkačik, and William Bialek. (2013) 2013. “Statistical Thermodynamics of Natural Images.”. Phys Rev Lett 110 (1): 018701.

Tkačik, Gašper, Aleksandra M Walczak, and William Bialek. (2009) 2009. “Optimizing Information Flow in Small Genetic Networks.”. Phys Rev E Stat Nonlin Soft Matter Phys 80 (3 Pt 1): 031920.

Still, Susanne, and William Bialek. (2004) 2004. “How Many Clusters? An Information-Theoretic Perspective.”. Neural Comput 16 (12): 2483-506.

Brenner, Naama, Oded Agam, William Bialek, and Rob de Ruyter van Steveninck. (2002) 2002. “Statistical Properties of Spike Trains: Universal and Stimulus-Dependent Aspects.”. Phys Rev E Stat Nonlin Soft Matter Phys 66 (3 Pt 1): 031907.

Nemenman, Ilya, and William Bialek. (2002) 2002. “Occam Factors and Model Independent Bayesian Learning of Continuous Distributions.”. Phys Rev E Stat Nonlin Soft Matter Phys 65 (2 Pt 2): 026137.

Stephens, Greg J, Bethany Johnson-Kerner, William Bialek, and William S Ryu. 2010. “From Modes to Movement in the Behavior of Caenorhabditis Elegans.”. PLoS One 5 (11): e13914.

Stephens, Greg J, and William Bialek. (2010) 2010. “Statistical Mechanics of Letters in Words.”. Phys Rev E Stat Nonlin Soft Matter Phys 81 (6 Pt 2): 066119.

Sharpee, Tatyana, and William Bialek. 2007. “Neural Decision Boundaries for Maximal Information Transmission.”. PLoS One 2 (7): e646.

Nemenman, Ilya, William Bialek, and Rob de Ruyter van Steveninck. (2004) 2004. “Entropy and Information in Neural Spike Trains: Progress on the Sampling Problem.”. Phys Rev E Stat Nonlin Soft Matter Phys 69 (5 Pt 2): 056111.

Bialek, William, Andrea Cavagna, Irene Giardina, Thierry Mora, Edmondo Silvestri, Massimiliano Viale, and Aleksandra M Walczak. (2012) 2012. “Statistical Mechanics for Natural Flocks of Birds.”. Proc Natl Acad Sci U S A 109 (13): 4786-91.

Nemenman, Ilya, Geoffrey D Lewen, William Bialek, and Rob R de Ruyter van Steveninck. (2008) 2008. “Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution.”. PLoS Comput Biol 4 (3): e1000025.

Stephens, Greg J, Matthew Bueno de Mesquita, William S Ryu, and William Bialek. (2011) 2011. “Emergence of Long Timescales and Stereotyped Behaviors in Caenorhabditis Elegans.”. Proc Natl Acad Sci U S A 108 (18): 7286-9.

Petkova, Mariela, Gašper Tkačik, William Bialek, Eric Wieschaus, and Thomas Gregor. (2019) 2019. “Optimal Decoding of Cellular Identities in a Genetic Network.”. Cell 176 (4): 844-855.e15. doi:10.1016/j.cell.2019.01.007.